EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000012711 (Gene tree)
Gene ID: 111220289
Gene Symbol: lsm12b
Alias: lsm12|wu:fe01f11|zgc:66039
Full Name: LSM12 homolog
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 7770 bases
Position: chrBDQW01000068.1:4170975-4178744
Accession: 111220289
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000017401	AD	PF09793.9	7.3e-25	1	1
ENSSDUP00000017411	AD	PF09793.9	8.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000017730	-	1888	-	ENSSDUP00000017411	203 (aa)	-	-
ENSSDUT00000017719	-	2015	XM_022743325	ENSSDUP00000017401	196 (aa)	XP_022599046	UPI000BBEF530

Gene Model

Click here to download ENSSDUG00000012711's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000012711's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000012711	lsm12b	100	86.224	ENSG00000161654	LSM12	100	86.224	Homo_sapiens
ENSSDUG00000012711	lsm12b	100	98.980	ENSAPOG00000007907	lsm12b	100	98.980	Acanthochromis_polyacanthus
ENSSDUG00000012711	lsm12b	100	84.422	ENSAMEG00000018321	LSM12	100	84.422	Ailuropoda_melanoleuca
ENSSDUG00000012711	lsm12b	100	97.449	ENSACIG00000008538	lsm12b	100	97.449	Amphilophus_citrinellus
ENSSDUG00000012711	lsm12b	100	99.490	ENSAOCG00000021847	lsm12b	88	99.490	Amphiprion_ocellaris
ENSSDUG00000012711	lsm12b	100	99.490	ENSAPEG00000002252	lsm12b	100	99.490	Amphiprion_percula
ENSSDUG00000012711	lsm12b	100	97.959	ENSATEG00000005705	lsm12b	100	97.959	Anabas_testudineus
ENSSDUG00000012711	lsm12b	100	85.204	ENSACAG00000004618	LSM12	100	85.204	Anolis_carolinensis
ENSSDUG00000012711	lsm12b	100	86.224	ENSANAG00000029011	LSM12	100	86.224	Aotus_nancymaae
ENSSDUG00000012711	lsm12b	100	97.959	ENSACLG00000026332	lsm12b	100	97.959	Astatotilapia_calliptera
ENSSDUG00000012711	lsm12b	100	85.714	ENSAMXG00000036117	lsm12a	91	85.714	Astyanax_mexicanus
ENSSDUG00000012711	lsm12b	100	93.878	ENSAMXG00000032952	lsm12b	100	93.878	Astyanax_mexicanus
ENSSDUG00000012711	lsm12b	100	86.224	ENSBTAG00000016252	LSM12	100	86.224	Bos_taurus
ENSSDUG00000012711	lsm12b	100	86.224	ENSCJAG00000048480	LSM12	100	86.224	Callithrix_jacchus
ENSSDUG00000012711	lsm12b	100	86.224	ENSCAFG00000014379	LSM12	92	86.224	Canis_familiaris
ENSSDUG00000012711	lsm12b	100	86.224	ENSCAFG00020012173	LSM12	100	86.224	Canis_lupus_dingo
ENSSDUG00000012711	lsm12b	100	86.224	ENSCHIG00000018175	LSM12	100	86.224	Capra_hircus
ENSSDUG00000012711	lsm12b	100	86.224	ENSTSYG00000036361	LSM12	100	86.224	Carlito_syrichta
ENSSDUG00000012711	lsm12b	83	82.099	ENSCAPG00000009647	LSM12	89	82.099	Cavia_aperea
ENSSDUG00000012711	lsm12b	100	85.204	ENSCPOG00000012860	LSM12	100	85.204	Cavia_porcellus
ENSSDUG00000012711	lsm12b	100	86.224	ENSCCAG00000032905	LSM12	100	86.224	Cebus_capucinus
ENSSDUG00000012711	lsm12b	100	86.224	ENSCATG00000030577	-	100	86.224	Cercocebus_atys
ENSSDUG00000012711	lsm12b	100	85.714	ENSCLAG00000015759	LSM12	100	85.714	Chinchilla_lanigera
ENSSDUG00000012711	lsm12b	100	86.735	ENSCSAG00000003486	LSM12	100	86.735	Chlorocebus_sabaeus
ENSSDUG00000012711	lsm12b	56	87.156	ENSCHOG00000001198	LSM12	100	87.156	Choloepus_hoffmanni
ENSSDUG00000012711	lsm12b	100	86.735	ENSCPBG00000027105	LSM12	100	86.735	Chrysemys_picta_bellii
ENSSDUG00000012711	lsm12b	100	86.224	ENSCANG00000043328	LSM12	100	86.224	Colobus_angolensis_palliatus
ENSSDUG00000012711	lsm12b	100	86.224	ENSCGRG00001002094	Lsm12	100	86.224	Cricetulus_griseus_chok1gshd
ENSSDUG00000012711	lsm12b	89	78.161	ENSCGRG00000004316	Lsm12	98	78.161	Cricetulus_griseus_crigri
ENSSDUG00000012711	lsm12b	100	97.959	ENSCSEG00000008434	lsm12b	100	97.959	Cynoglossus_semilaevis
ENSSDUG00000012711	lsm12b	100	97.449	ENSCVAG00000008755	lsm12b	100	97.449	Cyprinodon_variegatus
ENSSDUG00000012711	lsm12b	100	95.408	ENSDARG00000109510	lsm12b	100	95.408	Danio_rerio
ENSSDUG00000012711	lsm12b	100	86.735	ENSDARG00000028848	lsm12a	100	86.735	Danio_rerio
ENSSDUG00000012711	lsm12b	100	86.224	ENSDNOG00000002418	LSM12	91	86.224	Dasypus_novemcinctus
ENSSDUG00000012711	lsm12b	100	86.224	ENSDORG00000016381	Lsm12	100	86.224	Dipodomys_ordii
ENSSDUG00000012711	lsm12b	83	33.735	FBgn0030364	Lsm12	76	33.735	Drosophila_melanogaster
ENSSDUG00000012711	lsm12b	73	32.911	FBgn0036057	CG14164	83	32.911	Drosophila_melanogaster
ENSSDUG00000012711	lsm12b	100	85.714	ENSETEG00000008374	LSM12	100	85.714	Echinops_telfairi
ENSSDUG00000012711	lsm12b	88	76.879	ENSETEG00000011012	-	99	76.879	Echinops_telfairi
ENSSDUG00000012711	lsm12b	85	67.066	ENSEBUG00000016299	lsm12a	92	67.066	Eptatretus_burgeri
ENSSDUG00000012711	lsm12b	100	86.224	ENSEASG00005010155	LSM12	100	86.224	Equus_asinus_asinus
ENSSDUG00000012711	lsm12b	100	86.224	ENSECAG00000009071	LSM12	100	86.224	Equus_caballus
ENSSDUG00000012711	lsm12b	78	86.275	ENSEEUG00000002419	-	100	86.275	Erinaceus_europaeus
ENSSDUG00000012711	lsm12b	100	92.347	ENSELUG00000000256	-	100	92.347	Esox_lucius
ENSSDUG00000012711	lsm12b	100	95.918	ENSELUG00000015538	lsm12b	100	91.327	Esox_lucius
ENSSDUG00000012711	lsm12b	100	86.224	ENSFCAG00000037021	LSM12	100	86.224	Felis_catus
ENSSDUG00000012711	lsm12b	80	82.692	ENSFDAG00000008954	LSM12	91	82.692	Fukomys_damarensis
ENSSDUG00000012711	lsm12b	100	97.449	ENSFHEG00000019913	lsm12b	100	97.449	Fundulus_heteroclitus
ENSSDUG00000012711	lsm12b	81	98.101	ENSGMOG00000015449	lsm12b	100	98.101	Gadus_morhua
ENSSDUG00000012711	lsm12b	78	86.928	ENSGALG00000039803	LSM12	100	86.928	Gallus_gallus
ENSSDUG00000012711	lsm12b	100	97.449	ENSGAFG00000011829	lsm12b	100	97.449	Gambusia_affinis
ENSSDUG00000012711	lsm12b	81	98.734	ENSGACG00000003428	lsm12b	100	98.734	Gasterosteus_aculeatus
ENSSDUG00000012711	lsm12b	100	85.714	ENSGAGG00000021965	LSM12	100	85.714	Gopherus_agassizii
ENSSDUG00000012711	lsm12b	100	86.224	ENSGGOG00000010589	-	100	86.224	Gorilla_gorilla
ENSSDUG00000012711	lsm12b	85	97.605	ENSHBUG00000007667	lsm12b	74	97.605	Haplochromis_burtoni
ENSSDUG00000012711	lsm12b	100	86.224	ENSHGLG00000011411	LSM12	100	86.224	Heterocephalus_glaber_female
ENSSDUG00000012711	lsm12b	79	85.714	ENSHGLG00100000241	LSM12	82	85.714	Heterocephalus_glaber_male
ENSSDUG00000012711	lsm12b	100	95.408	ENSHCOG00000002094	lsm12b	100	95.408	Hippocampus_comes
ENSSDUG00000012711	lsm12b	99	84.021	ENSIPUG00000008936	lsm12a	99	84.021	Ictalurus_punctatus
ENSSDUG00000012711	lsm12b	100	94.898	ENSIPUG00000014800	lsm12	100	94.898	Ictalurus_punctatus
ENSSDUG00000012711	lsm12b	100	86.224	ENSSTOG00000007403	LSM12	100	86.224	Ictidomys_tridecemlineatus
ENSSDUG00000012711	lsm12b	100	85.204	ENSJJAG00000004364	-	100	86.364	Jaculus_jaculus
ENSSDUG00000012711	lsm12b	80	74.214	ENSJJAG00000014652	-	95	74.214	Jaculus_jaculus
ENSSDUG00000012711	lsm12b	96	76.316	ENSJJAG00000011793	-	100	76.316	Jaculus_jaculus
ENSSDUG00000012711	lsm12b	85	97.006	ENSKMAG00000007704	lsm12b	56	97.006	Kryptolebias_marmoratus
ENSSDUG00000012711	lsm12b	100	98.980	ENSLBEG00000027999	lsm12b	100	98.980	Labrus_bergylta
ENSSDUG00000012711	lsm12b	100	88.776	ENSLACG00000015981	LSM12	100	88.776	Latimeria_chalumnae
ENSSDUG00000012711	lsm12b	100	93.367	ENSLOCG00000013079	lsm12b	99	93.367	Lepisosteus_oculatus
ENSSDUG00000012711	lsm12b	100	86.224	ENSLAFG00000005202	LSM12	100	86.224	Loxodonta_africana
ENSSDUG00000012711	lsm12b	100	86.224	ENSMFAG00000031376	LSM12	100	86.224	Macaca_fascicularis
ENSSDUG00000012711	lsm12b	100	86.224	ENSMMUG00000006804	LSM12	100	86.224	Macaca_mulatta
ENSSDUG00000012711	lsm12b	65	74.713	ENSMMUG00000042106	-	100	74.713	Macaca_mulatta
ENSSDUG00000012711	lsm12b	100	86.224	ENSMNEG00000030594	-	100	86.224	Macaca_nemestrina
ENSSDUG00000012711	lsm12b	100	86.224	ENSMLEG00000039934	LSM12	100	86.224	Mandrillus_leucophaeus
ENSSDUG00000012711	lsm12b	100	98.980	ENSMAMG00000004279	lsm12b	100	98.980	Mastacembelus_armatus
ENSSDUG00000012711	lsm12b	100	97.959	ENSMZEG00005005754	lsm12b	100	97.959	Maylandia_zebra
ENSSDUG00000012711	lsm12b	100	86.735	ENSMICG00000037219	LSM12	100	86.735	Microcebus_murinus
ENSSDUG00000012711	lsm12b	100	86.224	ENSMOCG00000019878	-	100	86.224	Microtus_ochrogaster
ENSSDUG00000012711	lsm12b	100	73.469	ENSMOCG00000017015	-	86	73.469	Microtus_ochrogaster
ENSSDUG00000012711	lsm12b	100	98.980	ENSMMOG00000020848	lsm12b	100	98.980	Mola_mola
ENSSDUG00000012711	lsm12b	100	98.980	ENSMALG00000007578	lsm12b	100	98.980	Monopterus_albus
ENSSDUG00000012711	lsm12b	100	85.714	MGP_CAROLIEiJ_G0017241	Lsm12	100	85.714	Mus_caroli
ENSSDUG00000012711	lsm12b	100	86.224	ENSMUSG00000020922	Lsm12	100	86.224	Mus_musculus
ENSSDUG00000012711	lsm12b	100	79.343	MGP_PahariEiJ_G0018371	Lsm12	100	79.343	Mus_pahari
ENSSDUG00000012711	lsm12b	100	85.714	MGP_SPRETEiJ_G0018084	Lsm12	100	85.714	Mus_spretus
ENSSDUG00000012711	lsm12b	100	86.735	ENSMLUG00000006391	LSM12	100	86.735	Myotis_lucifugus
ENSSDUG00000012711	lsm12b	100	59.606	ENSNGAG00000015429	-	100	59.606	Nannospalax_galili
ENSSDUG00000012711	lsm12b	100	86.224	ENSNGAG00000001870	Lsm12	100	86.224	Nannospalax_galili
ENSSDUG00000012711	lsm12b	100	97.959	ENSNBRG00000006266	lsm12b	100	97.959	Neolamprologus_brichardi
ENSSDUG00000012711	lsm12b	100	86.224	ENSNLEG00000005580	-	100	86.224	Nomascus_leucogenys
ENSSDUG00000012711	lsm12b	85	86.145	ENSMEUG00000007501	-	100	86.145	Notamacropus_eugenii
ENSSDUG00000012711	lsm12b	100	86.224	ENSOPRG00000008552	LSM12	100	86.224	Ochotona_princeps
ENSSDUG00000012711	lsm12b	100	77.551	ENSODEG00000007886	-	74	77.551	Octodon_degus
ENSSDUG00000012711	lsm12b	99	85.052	ENSODEG00000017998	-	99	85.052	Octodon_degus
ENSSDUG00000012711	lsm12b	100	97.959	ENSONIG00000007933	lsm12b	100	97.959	Oreochromis_niloticus
ENSSDUG00000012711	lsm12b	99	80.513	ENSOCUG00000027889	-	100	80.513	Oryctolagus_cuniculus
ENSSDUG00000012711	lsm12b	99	81.026	ENSOCUG00000021254	-	100	81.026	Oryctolagus_cuniculus
ENSSDUG00000012711	lsm12b	100	84.422	ENSOCUG00000008566	-	100	84.422	Oryctolagus_cuniculus
ENSSDUG00000012711	lsm12b	99	80.000	ENSOCUG00000024823	-	100	80.000	Oryctolagus_cuniculus
ENSSDUG00000012711	lsm12b	100	97.449	ENSORLG00000011310	lsm12b	100	97.449	Oryzias_latipes
ENSSDUG00000012711	lsm12b	100	97.449	ENSORLG00020002060	lsm12b	92	97.449	Oryzias_latipes_hni
ENSSDUG00000012711	lsm12b	100	97.449	ENSORLG00015001647	lsm12b	92	97.449	Oryzias_latipes_hsok
ENSSDUG00000012711	lsm12b	100	98.469	ENSOMEG00000006184	lsm12b	92	98.469	Oryzias_melastigma
ENSSDUG00000012711	lsm12b	100	86.735	ENSOGAG00000010489	LSM12	100	86.735	Otolemur_garnettii
ENSSDUG00000012711	lsm12b	100	83.168	ENSOARG00000006589	LSM12	100	83.168	Ovis_aries
ENSSDUG00000012711	lsm12b	100	76.531	ENSPPAG00000034974	-	100	76.531	Pan_paniscus
ENSSDUG00000012711	lsm12b	100	86.224	ENSPPRG00000023420	LSM12	100	86.224	Panthera_pardus
ENSSDUG00000012711	lsm12b	78	86.275	ENSPTIG00000012704	-	82	86.275	Panthera_tigris_altaica
ENSSDUG00000012711	lsm12b	72	85.455	ENSPTIG00000014850	-	100	85.455	Panthera_tigris_altaica
ENSSDUG00000012711	lsm12b	100	86.224	ENSPTRG00000009261	LSM12	100	86.224	Pan_troglodytes
ENSSDUG00000012711	lsm12b	100	86.224	ENSPANG00000021315	-	100	86.224	Papio_anubis
ENSSDUG00000012711	lsm12b	100	94.388	ENSPKIG00000021058	lsm12b	100	94.388	Paramormyrops_kingsleyae
ENSSDUG00000012711	lsm12b	100	83.673	ENSPKIG00000017932	-	100	83.673	Paramormyrops_kingsleyae
ENSSDUG00000012711	lsm12b	100	98.469	ENSPMGG00000021344	lsm12b	100	98.469	Periophthalmus_magnuspinnatus
ENSSDUG00000012711	lsm12b	100	86.224	ENSPEMG00000012199	Lsm12	100	86.224	Peromyscus_maniculatus_bairdii
ENSSDUG00000012711	lsm12b	89	68.000	ENSPMAG00000005461	lsm12a	99	68.000	Petromyzon_marinus
ENSSDUG00000012711	lsm12b	100	86.224	ENSPCIG00000020244	LSM12	100	86.224	Phascolarctos_cinereus
ENSSDUG00000012711	lsm12b	100	96.429	ENSPFOG00000015930	lsm12b	100	96.429	Poecilia_formosa
ENSSDUG00000012711	lsm12b	100	96.429	ENSPLAG00000021089	lsm12b	100	96.429	Poecilia_latipinna
ENSSDUG00000012711	lsm12b	100	96.429	ENSPMEG00000012961	lsm12b	100	96.429	Poecilia_mexicana
ENSSDUG00000012711	lsm12b	87	97.661	ENSPREG00000010236	lsm12b	95	97.661	Poecilia_reticulata
ENSSDUG00000012711	lsm12b	100	86.224	ENSPPYG00000008344	LSM12	100	86.224	Pongo_abelii
ENSSDUG00000012711	lsm12b	81	86.792	ENSPCAG00000008790	LSM12	100	86.792	Procavia_capensis
ENSSDUG00000012711	lsm12b	100	86.224	ENSPCOG00000027951	LSM12	100	86.224	Propithecus_coquereli
ENSSDUG00000012711	lsm12b	100	86.735	ENSPVAG00000013706	LSM12	100	86.735	Pteropus_vampyrus
ENSSDUG00000012711	lsm12b	100	97.959	ENSPNYG00000003386	lsm12b	100	97.959	Pundamilia_nyererei
ENSSDUG00000012711	lsm12b	100	84.694	ENSPNAG00000018435	lsm12a	100	84.694	Pygocentrus_nattereri
ENSSDUG00000012711	lsm12b	100	94.388	ENSPNAG00000004186	lsm12b	100	94.388	Pygocentrus_nattereri
ENSSDUG00000012711	lsm12b	100	86.224	ENSRNOG00000020894	Lsm12	100	86.224	Rattus_norvegicus
ENSSDUG00000012711	lsm12b	100	86.224	ENSRBIG00000027910	LSM12	100	86.224	Rhinopithecus_bieti
ENSSDUG00000012711	lsm12b	99	53.608	ENSRROG00000000537	-	99	53.608	Rhinopithecus_roxellana
ENSSDUG00000012711	lsm12b	100	86.224	ENSRROG00000045530	-	100	86.224	Rhinopithecus_roxellana
ENSSDUG00000012711	lsm12b	100	86.224	ENSSBOG00000025310	LSM12	100	86.224	Saimiri_boliviensis_boliviensis
ENSSDUG00000012711	lsm12b	81	84.810	ENSSHAG00000014914	LSM12	100	84.810	Sarcophilus_harrisii
ENSSDUG00000012711	lsm12b	100	94.898	ENSSFOG00015009612	lsm12	100	94.898	Scleropages_formosus
ENSSDUG00000012711	lsm12b	100	93.878	ENSSFOG00015020392	lsm12a	100	93.878	Scleropages_formosus
ENSSDUG00000012711	lsm12b	100	98.980	ENSSMAG00000008089	lsm12b	100	98.980	Scophthalmus_maximus
ENSSDUG00000012711	lsm12b	100	100.000	ENSSLDG00000007404	lsm12b	100	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000012711	lsm12b	78	85.621	ENSSARG00000005537	LSM12	100	85.621	Sorex_araneus
ENSSDUG00000012711	lsm12b	100	86.735	ENSSPUG00000011984	LSM12	100	86.735	Sphenodon_punctatus
ENSSDUG00000012711	lsm12b	100	99.490	ENSSPAG00000017058	lsm12b	100	99.490	Stegastes_partitus
ENSSDUG00000012711	lsm12b	100	86.224	ENSSSCG00000032394	LSM12	100	86.224	Sus_scrofa
ENSSDUG00000012711	lsm12b	100	97.959	ENSTRUG00000007121	lsm12b	100	97.959	Takifugu_rubripes
ENSSDUG00000012711	lsm12b	100	96.939	ENSTNIG00000014436	lsm12b	100	96.939	Tetraodon_nigroviridis
ENSSDUG00000012711	lsm12b	100	85.714	ENSTBEG00000012523	-	100	85.714	Tupaia_belangeri
ENSSDUG00000012711	lsm12b	100	83.673	ENSTBEG00000012392	-	100	83.673	Tupaia_belangeri
ENSSDUG00000012711	lsm12b	100	86.224	ENSTTRG00000010433	LSM12	100	86.224	Tursiops_truncatus
ENSSDUG00000012711	lsm12b	100	86.224	ENSUAMG00000006313	LSM12	100	86.224	Ursus_americanus
ENSSDUG00000012711	lsm12b	81	83.544	ENSUMAG00000012987	LSM12	90	83.544	Ursus_maritimus
ENSSDUG00000012711	lsm12b	100	81.633	ENSVPAG00000011145	LSM12	100	81.633	Vicugna_pacos
ENSSDUG00000012711	lsm12b	100	86.224	ENSVVUG00000017581	LSM12	100	86.224	Vulpes_vulpes
ENSSDUG00000012711	lsm12b	82	61.875	ENSXETG00000003371	lsm12	77	61.875	Xenopus_tropicalis
ENSSDUG00000012711	lsm12b	100	97.449	ENSXCOG00000003994	lsm12b	100	97.449	Xiphophorus_couchianus
ENSSDUG00000012711	lsm12b	100	97.449	ENSXMAG00000020950	lsm12b	100	97.449	Xiphophorus_maculatus