EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000012802 (Gene tree)
Gene ID: 111216427
Gene Symbol: xrn2
Alias: wu:fb38g12|wu:fj53d06|zgc:55717
Full Name: 5'-3' exoribonuclease 2
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 38644 bases
Position: chrBDQW01000025.1:23418912-23457555
Accession: 111216427
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000017608	XRN_N	PF03159.18	3.8e-97	1	1
ENSSDUP00000017755	XRN_N	PF03159.18	9.5e-90	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000017931	-	2610	-	ENSSDUP00000017608	870 (aa)	-	-
ENSSDUT00000018081	-	2640	XM_022737952	ENSSDUP00000017755	879 (aa)	XP_022593673	-

Gene Model

Click here to download ENSSDUG00000012802's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03008	Ribosome biogenesis in eukaryotes	KEGG
sdu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000012802's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000012802	xrn2	99	72.285	ENSG00000088930	XRN2	91	71.946	Homo_sapiens
ENSSDUG00000012802	xrn2	99	90.125	ENSAPOG00000009818	xrn2	94	87.257	Acanthochromis_polyacanthus
ENSSDUG00000012802	xrn2	99	72.398	ENSAMEG00000012581	XRN2	91	72.059	Ailuropoda_melanoleuca
ENSSDUG00000012802	xrn2	99	82.227	ENSACIG00000015047	xrn2	95	87.332	Amphilophus_citrinellus
ENSSDUG00000012802	xrn2	99	90.579	ENSAOCG00000023632	xrn2	94	87.257	Amphiprion_ocellaris
ENSSDUG00000012802	xrn2	99	90.465	ENSAPEG00000014871	xrn2	94	87.163	Amphiprion_percula
ENSSDUG00000012802	xrn2	99	90.465	ENSATEG00000001273	xrn2	96	87.351	Anabas_testudineus
ENSSDUG00000012802	xrn2	96	72.033	ENSAPLG00000013869	XRN2	90	72.033	Anas_platyrhynchos
ENSSDUG00000012802	xrn2	98	72.936	ENSACAG00000005565	XRN2	89	73.303	Anolis_carolinensis
ENSSDUG00000012802	xrn2	99	72.285	ENSANAG00000020126	XRN2	91	71.946	Aotus_nancymaae
ENSSDUG00000012802	xrn2	100	85.601	ENSACLG00000010522	xrn2	94	90.385	Astatotilapia_calliptera
ENSSDUG00000012802	xrn2	99	83.183	ENSAMXG00000018301	xrn2	96	80.344	Astyanax_mexicanus
ENSSDUG00000012802	xrn2	99	71.509	ENSBTAG00000011304	XRN2	92	71.171	Bos_taurus
ENSSDUG00000012802	xrn2	95	53.497	WBGene00006964	xrn-2	87	53.426	Caenorhabditis_elegans
ENSSDUG00000012802	xrn2	99	72.511	ENSCJAG00000005611	XRN2	91	72.172	Callithrix_jacchus
ENSSDUG00000012802	xrn2	99	72.398	ENSCAFG00000005185	XRN2	91	72.059	Canis_familiaris
ENSSDUG00000012802	xrn2	99	72.398	ENSCAFG00020027479	XRN2	91	72.059	Canis_lupus_dingo
ENSSDUG00000012802	xrn2	99	71.396	ENSCHIG00000006921	XRN2	92	71.059	Capra_hircus
ENSSDUG00000012802	xrn2	99	72.059	ENSTSYG00000008315	XRN2	91	71.946	Carlito_syrichta
ENSSDUG00000012802	xrn2	97	61.111	ENSCAPG00000010773	XRN2	90	60.764	Cavia_aperea
ENSSDUG00000012802	xrn2	99	72.851	ENSCPOG00000009407	XRN2	91	72.511	Cavia_porcellus
ENSSDUG00000012802	xrn2	99	72.172	ENSCATG00000040350	XRN2	92	71.833	Cercocebus_atys
ENSSDUG00000012802	xrn2	99	72.511	ENSCLAG00000013419	XRN2	91	72.172	Chinchilla_lanigera
ENSSDUG00000012802	xrn2	99	72.172	ENSCSAG00000011094	XRN2	91	71.833	Chlorocebus_sabaeus
ENSSDUG00000012802	xrn2	66	87.363	ENSCHOG00000013404	XRN2	63	87.097	Choloepus_hoffmanni
ENSSDUG00000012802	xrn2	99	72.976	ENSCPBG00000023533	XRN2	96	69.486	Chrysemys_picta_bellii
ENSSDUG00000012802	xrn2	94	59.529	ENSCING00000022336	-	100	60.047	Ciona_intestinalis
ENSSDUG00000012802	xrn2	90	68.981	ENSCSAVG00000011217	-	93	70.024	Ciona_savignyi
ENSSDUG00000012802	xrn2	99	72.172	ENSCANG00000040240	XRN2	91	71.833	Colobus_angolensis_palliatus
ENSSDUG00000012802	xrn2	99	72.738	ENSCGRG00001010676	Xrn2	93	72.398	Cricetulus_griseus_chok1gshd
ENSSDUG00000012802	xrn2	96	71.711	ENSCGRG00000006378	Xrn2	90	70.664	Cricetulus_griseus_crigri
ENSSDUG00000012802	xrn2	60	81.190	ENSCSEG00000005628	xrn2	99	80.998	Cynoglossus_semilaevis
ENSSDUG00000012802	xrn2	99	85.568	ENSCVAG00000018999	xrn2	98	91.412	Cyprinodon_variegatus
ENSSDUG00000012802	xrn2	98	83.314	ENSDARG00000101900	xrn2	96	85.333	Danio_rerio
ENSSDUG00000012802	xrn2	99	72.511	ENSDNOG00000001895	XRN2	91	72.172	Dasypus_novemcinctus
ENSSDUG00000012802	xrn2	99	71.234	ENSDORG00000005434	Xrn2	91	70.895	Dipodomys_ordii
ENSSDUG00000012802	xrn2	95	55.210	FBgn0031868	Rat1	92	53.689	Drosophila_melanogaster
ENSSDUG00000012802	xrn2	89	79.661	ENSETEG00000001740	XRN2	83	79.661	Echinops_telfairi
ENSSDUG00000012802	xrn2	93	67.191	ENSEBUG00000016136	xrn2	100	67.191	Eptatretus_burgeri
ENSSDUG00000012802	xrn2	97	73.611	ENSEASG00005002484	XRN2	89	73.264	Equus_asinus_asinus
ENSSDUG00000012802	xrn2	92	88.462	ENSECAG00000018988	XRN2	86	88.462	Equus_caballus
ENSSDUG00000012802	xrn2	74	92.000	ENSEEUG00000009265	XRN2	67	92.000	Erinaceus_europaeus
ENSSDUG00000012802	xrn2	99	84.904	ENSELUG00000000552	xrn2	95	81.565	Esox_lucius
ENSSDUG00000012802	xrn2	99	72.172	ENSFCAG00000007970	XRN2	91	71.833	Felis_catus
ENSSDUG00000012802	xrn2	98	73.272	ENSFALG00000004508	XRN2	89	73.812	Ficedula_albicollis
ENSSDUG00000012802	xrn2	99	72.398	ENSFDAG00000016311	XRN2	91	72.059	Fukomys_damarensis
ENSSDUG00000012802	xrn2	59	85.934	ENSFHEG00000013039	xrn2	98	85.934	Fundulus_heteroclitus
ENSSDUG00000012802	xrn2	95	78.469	ENSGMOG00000013436	xrn2	100	79.257	Gadus_morhua
ENSSDUG00000012802	xrn2	99	72.000	ENSGALG00000008372	XRN2	90	72.318	Gallus_gallus
ENSSDUG00000012802	xrn2	99	85.666	ENSGAFG00000014284	xrn2	98	86.860	Gambusia_affinis
ENSSDUG00000012802	xrn2	95	84.754	ENSGACG00000011870	xrn2	96	89.675	Gasterosteus_aculeatus
ENSSDUG00000012802	xrn2	99	72.976	ENSGAGG00000004884	XRN2	96	69.593	Gopherus_agassizii
ENSSDUG00000012802	xrn2	99	72.172	ENSGGOG00000013738	XRN2	91	71.833	Gorilla_gorilla
ENSSDUG00000012802	xrn2	59	90.192	ENSHBUG00000005077	xrn2	94	90.192	Haplochromis_burtoni
ENSSDUG00000012802	xrn2	99	71.493	ENSHGLG00000014831	XRN2	91	71.380	Heterocephalus_glaber_female
ENSSDUG00000012802	xrn2	99	71.493	ENSHGLG00100013130	XRN2	91	71.380	Heterocephalus_glaber_male
ENSSDUG00000012802	xrn2	99	84.336	ENSHCOG00000011994	xrn2	95	80.791	Hippocampus_comes
ENSSDUG00000012802	xrn2	98	83.144	ENSIPUG00000006639	xrn2	96	79.936	Ictalurus_punctatus
ENSSDUG00000012802	xrn2	99	72.511	ENSSTOG00000000589	XRN2	91	72.172	Ictidomys_tridecemlineatus
ENSSDUG00000012802	xrn2	99	72.511	ENSJJAG00000022128	Xrn2	91	72.172	Jaculus_jaculus
ENSSDUG00000012802	xrn2	60	88.506	ENSLBEG00000010041	xrn2	100	88.123	Labrus_bergylta
ENSSDUG00000012802	xrn2	96	72.875	ENSLACG00000008307	XRN2	97	75.307	Latimeria_chalumnae
ENSSDUG00000012802	xrn2	97	77.558	ENSLOCG00000016874	xrn2	93	81.054	Lepisosteus_oculatus
ENSSDUG00000012802	xrn2	99	72.738	ENSLAFG00000014624	XRN2	91	72.398	Loxodonta_africana
ENSSDUG00000012802	xrn2	99	72.172	ENSMFAG00000038122	XRN2	91	71.833	Macaca_fascicularis
ENSSDUG00000012802	xrn2	99	72.172	ENSMMUG00000011405	XRN2	91	71.833	Macaca_mulatta
ENSSDUG00000012802	xrn2	99	72.059	ENSMNEG00000040626	XRN2	91	71.719	Macaca_nemestrina
ENSSDUG00000012802	xrn2	99	72.059	ENSMLEG00000041897	XRN2	91	71.719	Mandrillus_leucophaeus
ENSSDUG00000012802	xrn2	99	91.373	ENSMAMG00000008633	xrn2	95	88.841	Mastacembelus_armatus
ENSSDUG00000012802	xrn2	100	87.415	ENSMZEG00005022362	xrn2	98	87.415	Maylandia_zebra
ENSSDUG00000012802	xrn2	99	71.559	ENSMGAG00000003196	XRN2	90	71.871	Meleagris_gallopavo
ENSSDUG00000012802	xrn2	99	72.520	ENSMAUG00000021842	Xrn2	95	69.664	Mesocricetus_auratus
ENSSDUG00000012802	xrn2	99	72.172	ENSMICG00000008126	XRN2	91	71.833	Microcebus_murinus
ENSSDUG00000012802	xrn2	99	72.624	ENSMOCG00000012588	Xrn2	91	72.285	Microtus_ochrogaster
ENSSDUG00000012802	xrn2	99	87.769	ENSMMOG00000017576	xrn2	98	87.599	Mola_mola
ENSSDUG00000012802	xrn2	99	72.831	ENSMODG00000006163	XRN2	96	70.250	Monodelphis_domestica
ENSSDUG00000012802	xrn2	100	88.448	ENSMALG00000011355	xrn2	99	88.448	Monopterus_albus
ENSSDUG00000012802	xrn2	99	72.851	MGP_CAROLIEiJ_G0024400	Xrn2	91	72.511	Mus_caroli
ENSSDUG00000012802	xrn2	99	72.964	ENSMUSG00000027433	Xrn2	91	72.624	Mus_musculus
ENSSDUG00000012802	xrn2	99	72.738	MGP_PahariEiJ_G0025843	Xrn2	91	72.398	Mus_pahari
ENSSDUG00000012802	xrn2	99	72.964	MGP_SPRETEiJ_G0025318	Xrn2	94	83.168	Mus_spretus
ENSSDUG00000012802	xrn2	99	70.921	ENSMPUG00000001198	XRN2	85	70.588	Mustela_putorius_furo
ENSSDUG00000012802	xrn2	99	72.367	ENSMLUG00000001536	XRN2	91	72.027	Myotis_lucifugus
ENSSDUG00000012802	xrn2	99	72.851	ENSNGAG00000018138	Xrn2	91	72.511	Nannospalax_galili
ENSSDUG00000012802	xrn2	100	87.642	ENSNBRG00000008062	xrn2	98	87.642	Neolamprologus_brichardi
ENSSDUG00000012802	xrn2	99	72.172	ENSNLEG00000009991	XRN2	91	71.833	Nomascus_leucogenys
ENSSDUG00000012802	xrn2	56	82.222	ENSMEUG00000008622	-	53	82.222	Notamacropus_eugenii
ENSSDUG00000012802	xrn2	67	72.632	ENSOPRG00000001397	-	63	72.632	Ochotona_princeps
ENSSDUG00000012802	xrn2	97	65.965	ENSODEG00000000860	-	96	64.502	Octodon_degus
ENSSDUG00000012802	xrn2	99	72.398	ENSODEG00000010745	-	91	72.059	Octodon_degus
ENSSDUG00000012802	xrn2	99	87.287	ENSONIG00000018720	xrn2	91	84.216	Oreochromis_niloticus
ENSSDUG00000012802	xrn2	99	72.146	ENSOANG00000015673	XRN2	96	69.481	Ornithorhynchus_anatinus
ENSSDUG00000012802	xrn2	99	72.624	ENSOCUG00000013468	XRN2	91	72.285	Oryctolagus_cuniculus
ENSSDUG00000012802	xrn2	99	86.560	ENSORLG00000017213	xrn2	98	86.613	Oryzias_latipes
ENSSDUG00000012802	xrn2	99	86.234	ENSORLG00020001824	xrn2	96	83.082	Oryzias_latipes_hni
ENSSDUG00000012802	xrn2	99	85.779	ENSORLG00015019747	xrn2	96	82.651	Oryzias_latipes_hsok
ENSSDUG00000012802	xrn2	99	86.689	ENSOMEG00000019820	xrn2	89	86.927	Oryzias_melastigma
ENSSDUG00000012802	xrn2	99	72.851	ENSOGAG00000001068	XRN2	91	72.511	Otolemur_garnettii
ENSSDUG00000012802	xrn2	97	70.882	ENSOARG00000004443	XRN2	91	70.534	Ovis_aries
ENSSDUG00000012802	xrn2	99	72.172	ENSPPAG00000033549	XRN2	91	71.833	Pan_paniscus
ENSSDUG00000012802	xrn2	99	72.172	ENSPPRG00000008732	XRN2	91	71.833	Panthera_pardus
ENSSDUG00000012802	xrn2	96	71.678	ENSPTIG00000015683	XRN2	88	71.329	Panthera_tigris_altaica
ENSSDUG00000012802	xrn2	99	72.172	ENSPTRG00000013308	XRN2	91	71.833	Pan_troglodytes
ENSSDUG00000012802	xrn2	99	72.172	ENSPANG00000018088	XRN2	91	71.833	Papio_anubis
ENSSDUG00000012802	xrn2	99	82.265	ENSPKIG00000016889	xrn2	95	78.742	Paramormyrops_kingsleyae
ENSSDUG00000012802	xrn2	88	74.264	ENSPSIG00000014666	XRN2	100	73.974	Pelodiscus_sinensis
ENSSDUG00000012802	xrn2	99	72.398	ENSPEMG00000000111	Xrn2	91	72.059	Peromyscus_maniculatus_bairdii
ENSSDUG00000012802	xrn2	99	85.034	ENSPFOG00000004182	xrn2	95	82.829	Poecilia_formosa
ENSSDUG00000012802	xrn2	99	85.666	ENSPLAG00000007351	xrn2	98	85.666	Poecilia_latipinna
ENSSDUG00000012802	xrn2	94	84.420	ENSPMEG00000011798	xrn2	95	82.110	Poecilia_mexicana
ENSSDUG00000012802	xrn2	99	85.568	ENSPREG00000012452	xrn2	98	85.795	Poecilia_reticulata
ENSSDUG00000012802	xrn2	99	71.946	ENSPPYG00000010755	XRN2	91	71.606	Pongo_abelii
ENSSDUG00000012802	xrn2	99	68.475	ENSPCAG00000011191	XRN2	91	67.458	Procavia_capensis
ENSSDUG00000012802	xrn2	99	66.440	ENSPCOG00000016468	XRN2	90	66.100	Propithecus_coquereli
ENSSDUG00000012802	xrn2	91	64.894	ENSPVAG00000004596	XRN2	82	64.894	Pteropus_vampyrus
ENSSDUG00000012802	xrn2	100	85.601	ENSPNYG00000001765	xrn2	98	85.698	Pundamilia_nyererei
ENSSDUG00000012802	xrn2	99	80.609	ENSPNAG00000010956	xrn2	96	77.612	Pygocentrus_nattereri
ENSSDUG00000012802	xrn2	99	73.303	ENSRNOG00000011785	Xrn2	91	72.964	Rattus_norvegicus
ENSSDUG00000012802	xrn2	95	74.460	ENSRBIG00000036193	XRN2	100	74.101	Rhinopithecus_bieti
ENSSDUG00000012802	xrn2	99	72.172	ENSRROG00000044400	XRN2	82	71.833	Rhinopithecus_roxellana
ENSSDUG00000012802	xrn2	81	50.542	YOR048C	RAT1	66	53.125	Saccharomyces_cerevisiae
ENSSDUG00000012802	xrn2	99	72.398	ENSSBOG00000021014	XRN2	91	72.059	Saimiri_boliviensis_boliviensis
ENSSDUG00000012802	xrn2	99	83.333	ENSSFOG00015001091	xrn2	96	79.677	Scleropages_formosus
ENSSDUG00000012802	xrn2	99	88.435	ENSSMAG00000007834	xrn2	94	84.657	Scophthalmus_maximus
ENSSDUG00000012802	xrn2	99	95.914	ENSSLDG00000021273	xrn2	98	95.914	Seriola_lalandi_dorsalis
ENSSDUG00000012802	xrn2	59	92.000	ENSSARG00000005859	-	54	92.000	Sorex_araneus
ENSSDUG00000012802	xrn2	99	70.662	ENSSPUG00000005485	XRN2	94	68.364	Sphenodon_punctatus
ENSSDUG00000012802	xrn2	99	89.898	ENSSPAG00000016027	xrn2	95	86.084	Stegastes_partitus
ENSSDUG00000012802	xrn2	99	71.380	ENSSSCG00000007109	XRN2	91	70.362	Sus_scrofa
ENSSDUG00000012802	xrn2	98	71.839	ENSTGUG00000007535	XRN2	89	72.254	Taeniopygia_guttata
ENSSDUG00000012802	xrn2	99	85.341	ENSTRUG00000015489	xrn2	93	82.543	Takifugu_rubripes
ENSSDUG00000012802	xrn2	99	84.109	ENSTNIG00000010712	xrn2	91	83.202	Tetraodon_nigroviridis
ENSSDUG00000012802	xrn2	99	71.719	ENSTBEG00000004119	XRN2	91	71.606	Tupaia_belangeri
ENSSDUG00000012802	xrn2	92	76.140	ENSTTRG00000009087	XRN2	84	74.561	Tursiops_truncatus
ENSSDUG00000012802	xrn2	99	72.398	ENSUAMG00000024634	XRN2	92	72.338	Ursus_americanus
ENSSDUG00000012802	xrn2	96	71.795	ENSUMAG00000004012	XRN2	86	71.445	Ursus_maritimus
ENSSDUG00000012802	xrn2	78	82.315	ENSVPAG00000010694	XRN2	74	82.315	Vicugna_pacos
ENSSDUG00000012802	xrn2	99	72.398	ENSVVUG00000012178	XRN2	91	72.059	Vulpes_vulpes
ENSSDUG00000012802	xrn2	99	74.146	ENSXETG00000023501	xrn2	91	75.029	Xenopus_tropicalis
ENSSDUG00000012802	xrn2	99	85.261	ENSXMAG00000000242	xrn2	92	87.893	Xiphophorus_maculatus