EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000012918 (Gene tree)
Gene ID: 111217151
Gene Symbol: scaf4a
Alias: fa96d07|si:dkey-50p8.3|wu:fa96d07
Full Name: SR-related CTD associated factor 4
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 11520 bases
Position: chrBDQW01000040.1:2187751-2199270
Accession: 111217151
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000017670	RRM_1	PF00076.22	7.2e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000017994	-	6078	XM_022738892	ENSSDUP00000017670	1146 (aa)	XP_022594613	-

Gene Model

Click here to download ENSSDUG00000012918's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000012918's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000012918	scaf4a	100	84.568	ENSAPOG00000002946	scaf4a	100	85.092	Acanthochromis_polyacanthus
ENSSDUG00000012918	scaf4a	100	85.789	ENSAOCG00000000615	scaf4a	100	86.312	Amphiprion_ocellaris
ENSSDUG00000012918	scaf4a	100	85.092	ENSAPEG00000021229	scaf4a	100	85.615	Amphiprion_percula
ENSSDUG00000012918	scaf4a	59	48.521	ENSATEG00000011758	scaf4b	99	41.860	Anabas_testudineus
ENSSDUG00000012918	scaf4a	83	58.509	ENSAPLG00000002509	SCAF4	85	50.947	Anas_platyrhynchos
ENSSDUG00000012918	scaf4a	53	61.842	ENSACAG00000002569	SCAF4	74	50.000	Anolis_carolinensis
ENSSDUG00000012918	scaf4a	99	51.306	ENSAMXG00000008585	scaf4a	83	58.793	Astyanax_mexicanus
ENSSDUG00000012918	scaf4a	54	59.403	ENSCJAG00000008993	SCAF4	90	58.301	Callithrix_jacchus
ENSSDUG00000012918	scaf4a	53	59.873	ENSCAFG00020026019	SCAF4	68	62.876	Canis_lupus_dingo
ENSSDUG00000012918	scaf4a	100	75.258	ENSCSEG00000019549	scaf4a	99	75.214	Cynoglossus_semilaevis
ENSSDUG00000012918	scaf4a	84	56.754	ENSDARG00000077093	scaf4a	79	56.774	Danio_rerio
ENSSDUG00000012918	scaf4a	79	80.000	ENSELUG00000009909	scaf4a	93	80.000	Esox_lucius
ENSSDUG00000012918	scaf4a	64	79.384	ENSFHEG00000017866	scaf4a	90	79.365	Fundulus_heteroclitus
ENSSDUG00000012918	scaf4a	64	64.807	ENSGMOG00000015188	scaf4a	80	63.648	Gadus_morhua
ENSSDUG00000012918	scaf4a	58	58.509	ENSGALG00000033965	SCAF4	85	52.183	Gallus_gallus
ENSSDUG00000012918	scaf4a	64	81.477	ENSGAFG00000019460	scaf4a	83	80.764	Gambusia_affinis
ENSSDUG00000012918	scaf4a	52	59.391	ENSGAFG00000018033	SCAF8	50	44.521	Gambusia_affinis
ENSSDUG00000012918	scaf4a	73	80.396	ENSGACG00000020580	scaf4a	85	79.341	Gasterosteus_aculeatus
ENSSDUG00000012918	scaf4a	100	82.571	ENSHBUG00000007920	scaf4a	100	81.191	Haplochromis_burtoni
ENSSDUG00000012918	scaf4a	58	92.647	ENSHCOG00000006849	scaf4a	87	92.593	Hippocampus_comes
ENSSDUG00000012918	scaf4a	64	58.909	ENSKMAG00000005742	scaf4b	52	71.831	Kryptolebias_marmoratus
ENSSDUG00000012918	scaf4a	98	79.556	ENSLBEG00000014675	scaf4a	100	80.000	Labrus_bergylta
ENSSDUG00000012918	scaf4a	74	83.774	ENSMAMG00000013223	scaf4a	100	83.699	Mastacembelus_armatus
ENSSDUG00000012918	scaf4a	99	81.027	ENSMZEG00005024349	scaf4a	100	81.065	Maylandia_zebra
ENSSDUG00000012918	scaf4a	57	57.977	ENSMGAG00000014515	SCAF4	85	51.652	Meleagris_gallopavo
ENSSDUG00000012918	scaf4a	100	81.888	ENSONIG00000004687	scaf4a	100	81.116	Oreochromis_niloticus
ENSSDUG00000012918	scaf4a	54	58.963	ENSOCUG00000008336	SCAF4	80	53.395	Oryctolagus_cuniculus
ENSSDUG00000012918	scaf4a	100	72.498	ENSORLG00000004384	scaf4a	100	72.498	Oryzias_latipes
ENSSDUG00000012918	scaf4a	100	70.816	ENSORLG00020011857	scaf4a	100	71.236	Oryzias_latipes_hni
ENSSDUG00000012918	scaf4a	100	73.074	ENSORLG00015017880	scaf4a	100	73.158	Oryzias_latipes_hsok
ENSSDUG00000012918	scaf4a	99	71.933	ENSOMEG00000014482	scaf4a	64	80.637	Oryzias_melastigma
ENSSDUG00000012918	scaf4a	53	53.640	ENSOARG00000013894	SCAF4	81	51.623	Ovis_aries
ENSSDUG00000012918	scaf4a	60	66.033	ENSPKIG00000022408	scaf4a	99	65.442	Paramormyrops_kingsleyae
ENSSDUG00000012918	scaf4a	51	42.258	ENSPSIG00000014242	SCAF4	82	54.093	Pelodiscus_sinensis
ENSSDUG00000012918	scaf4a	94	57.724	ENSPMGG00000016741	scaf4a	97	52.281	Periophthalmus_magnuspinnatus
ENSSDUG00000012918	scaf4a	86	71.759	ENSPFOG00000017156	scaf4a	97	73.856	Poecilia_formosa
ENSSDUG00000012918	scaf4a	59	57.762	ENSPLAG00000004403	-	51	69.718	Poecilia_latipinna
ENSSDUG00000012918	scaf4a	67	80.362	ENSPLAG00000001972	scaf4a	92	81.374	Poecilia_latipinna
ENSSDUG00000012918	scaf4a	71	57.661	ENSPNAG00000016892	scaf4a	83	60.737	Pygocentrus_nattereri
ENSSDUG00000012918	scaf4a	50	74.638	ENSPNAG00000015199	-	54	74.627	Pygocentrus_nattereri
ENSSDUG00000012918	scaf4a	88	46.834	ENSSFOG00015006338	scaf4a	79	52.785	Scleropages_formosus
ENSSDUG00000012918	scaf4a	99	79.949	ENSSMAG00000017901	scaf4a	72	82.759	Scophthalmus_maximus
ENSSDUG00000012918	scaf4a	100	99.129	ENSSLDG00000021671	scaf4a	100	99.129	Seriola_lalandi_dorsalis
ENSSDUG00000012918	scaf4a	61	55.904	ENSXETG00000007351	scaf4	53	48.101	Xenopus_tropicalis