EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000012967 (Gene tree)
Gene ID: 111225968
Gene Symbol: srrm1
Alias: wu:fb34f04|wu:fb38b06|zgc:63802
Full Name: serine and arginine repetitive matrix 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 11739 bases
Position: chrBDQW01000149.1:16270645-16282383
Accession: 111225968
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000017766	PWI	PF01480.17	8.5e-31	1	1
ENSSDUP00000017738	PWI	PF01480.17	9e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000018063	-	4127	XM_022751036	ENSSDUP00000017738	863 (aa)	XP_022606757	UPI000BBE485C
ENSSDUT00000018090	-	4040	-	ENSSDUP00000017766	834 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000012967's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03013	RNA transport	KEGG
sdu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000012967's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000012967	srrm1	59	93.762	ENSAPOG00000001170	srrm1	99	98.718	Acanthochromis_polyacanthus
ENSSDUG00000012967	srrm1	100	86.806	ENSAOCG00000021757	srrm1	100	89.102	Amphiprion_ocellaris
ENSSDUG00000012967	srrm1	100	86.111	ENSAPEG00000018964	srrm1	100	86.690	Amphiprion_percula
ENSSDUG00000012967	srrm1	100	90.382	ENSATEG00000007659	srrm1	100	90.382	Anabas_testudineus
ENSSDUG00000012967	srrm1	100	80.000	ENSCSEG00000000122	srrm1	100	81.932	Cynoglossus_semilaevis
ENSSDUG00000012967	srrm1	58	48.600	ENSDARG00000001244	srrm1	99	97.436	Danio_rerio
ENSSDUG00000012967	srrm1	69	79.787	ENSGMOG00000019099	srrm1	78	77.778	Gadus_morhua
ENSSDUG00000012967	srrm1	60	82.274	ENSGACG00000007266	srrm1	87	82.927	Gasterosteus_aculeatus
ENSSDUG00000012967	srrm1	77	92.096	ENSLBEG00000013936	srrm1	100	89.827	Labrus_bergylta
ENSSDUG00000012967	srrm1	100	90.730	ENSMAMG00000010305	srrm1	100	90.730	Mastacembelus_armatus
ENSSDUG00000012967	srrm1	58	81.600	ENSONIG00000008206	srrm1	54	72.328	Oreochromis_niloticus
ENSSDUG00000012967	srrm1	100	78.085	ENSORLG00015014743	srrm1	100	77.970	Oryzias_latipes_hsok
ENSSDUG00000012967	srrm1	89	78.205	ENSPMEG00000002603	srrm1	96	77.522	Poecilia_mexicana
ENSSDUG00000012967	srrm1	68	82.353	ENSPREG00000002652	srrm1	64	89.189	Poecilia_reticulata
ENSSDUG00000012967	srrm1	100	99.537	ENSSLDG00000012771	srrm1	100	99.537	Seriola_lalandi_dorsalis
ENSSDUG00000012967	srrm1	100	90.046	ENSSPAG00000009507	srrm1	60	94.595	Stegastes_partitus
ENSSDUG00000012967	srrm1	100	64.637	ENSTRUG00000002519	srrm1	100	77.110	Takifugu_rubripes
ENSSDUG00000012967	srrm1	99	71.029	ENSTNIG00000016909	srrm1	100	76.102	Tetraodon_nigroviridis