EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000013215 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: transcriptional repressor scratch 1-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 6773 bases
Position: chrBDQW01000110.1:8776784-8783556
Accession: 111223469
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000018097	zf-C2H2	PF00096.26	3.1e-25	1	4
ENSSDUP00000018097	zf-C2H2	PF00096.26	3.1e-25	2	4
ENSSDUP00000018097	zf-C2H2	PF00096.26	3.1e-25	3	4
ENSSDUP00000018097	zf-C2H2	PF00096.26	3.1e-25	4	4
ENSSDUP00000018097	zf-met	PF12874.7	7.6e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000018425	-	900	XM_022747629	ENSSDUP00000018097	299 (aa)	XP_022603350	UPI000C6F9A69

Gene Model

Click here to download ENSSDUG00000013215's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000013215's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000013215	-	58	46.154	ENSSDUG00000019932	ZNF319	62	46.154
ENSSDUG00000013215	-	56	37.594	ENSSDUG00000014574	znf526	50	37.594
ENSSDUG00000013215	-	53	46.053	ENSSDUG00000020810	-	75	35.802
ENSSDUG00000013215	-	56	36.842	ENSSDUG00000016734	-	52	36.842
ENSSDUG00000013215	-	73	40.000	ENSSDUG00000022914	-	78	40.000
ENSSDUG00000013215	-	98	60.252	ENSSDUG00000001637	scrt2	96	60.063
ENSSDUG00000013215	-	96	40.940	ENSSDUG00000018060	snai2	98	40.940
ENSSDUG00000013215	-	52	36.264	ENSSDUG00000023764	-	90	45.205
ENSSDUG00000013215	-	62	37.984	ENSSDUG00000015622	-	69	37.984
ENSSDUG00000013215	-	99	77.667	ENSSDUG00000007752	scrt1b	99	77.667
ENSSDUG00000013215	-	61	34.524	ENSSDUG00000010305	-	50	34.524
ENSSDUG00000013215	-	58	35.780	ENSSDUG00000004144	znf710b	51	35.780
ENSSDUG00000013215	-	50	41.096	ENSSDUG00000006426	-	90	44.615
ENSSDUG00000013215	-	60	40.196	ENSSDUG00000003003	znf319b	58	40.196
ENSSDUG00000013215	-	52	37.143	ENSSDUG00000002195	-	93	34.058
ENSSDUG00000013215	-	52	39.259	ENSSDUG00000000799	-	67	39.259
ENSSDUG00000013215	-	57	35.766	ENSSDUG00000015013	-	68	35.766
ENSSDUG00000013215	-	54	36.301	ENSSDUG00000006740	-	72	37.931
ENSSDUG00000013215	-	61	37.313	ENSSDUG00000020805	-	86	37.313
ENSSDUG00000013215	-	61	33.028	ENSSDUG00000001918	znf366	51	32.609
ENSSDUG00000013215	-	59	40.299	ENSSDUG00000007336	-	93	40.299
ENSSDUG00000013215	-	51	35.606	ENSSDUG00000004892	-	75	33.913
ENSSDUG00000013215	-	51	39.416	ENSSDUG00000002174	-	69	39.416
ENSSDUG00000013215	-	56	34.091	ENSSDUG00000000871	-	51	34.091
ENSSDUG00000013215	-	61	38.318	ENSSDUG00000013335	-	51	38.318
ENSSDUG00000013215	-	61	39.423	ENSSDUG00000013904	-	68	39.423
ENSSDUG00000013215	-	51	40.764	ENSSDUG00000009534	-	63	40.152
ENSSDUG00000013215	-	62	36.190	ENSSDUG00000016450	-	50	36.190
ENSSDUG00000013215	-	63	37.903	ENSSDUG00000000786	-	93	43.478
ENSSDUG00000013215	-	72	41.071	ENSSDUG00000011604	gfi1b	64	41.071
ENSSDUG00000013215	-	50	38.462	ENSSDUG00000000705	-	78	37.410

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000013215	-	100	90.970	ENSAPOG00000015197	-	100	90.970	Acanthochromis_polyacanthus
ENSSDUG00000013215	-	99	77.000	ENSAPOG00000009279	scrt1b	99	77.000	Acanthochromis_polyacanthus
ENSSDUG00000013215	-	97	63.448	ENSAPOG00000003680	scrt2	96	63.448	Acanthochromis_polyacanthus
ENSSDUG00000013215	-	99	76.254	ENSACIG00000013613	scrt1b	99	76.254	Amphilophus_citrinellus
ENSSDUG00000013215	-	97	54.313	ENSACIG00000001296	-	96	53.355	Amphilophus_citrinellus
ENSSDUG00000013215	-	100	97.659	ENSACIG00000006586	-	100	97.659	Amphilophus_citrinellus
ENSSDUG00000013215	-	97	61.953	ENSACIG00000012604	scrt2	96	61.953	Amphilophus_citrinellus
ENSSDUG00000013215	-	97	63.448	ENSAOCG00000021557	scrt2	96	63.448	Amphiprion_ocellaris
ENSSDUG00000013215	-	100	97.324	ENSAOCG00000023304	-	100	97.324	Amphiprion_ocellaris
ENSSDUG00000013215	-	99	77.000	ENSAOCG00000003910	scrt1b	99	77.000	Amphiprion_ocellaris
ENSSDUG00000013215	-	100	97.324	ENSAPEG00000005677	-	100	97.324	Amphiprion_percula
ENSSDUG00000013215	-	97	63.448	ENSAPEG00000022558	scrt2	96	63.448	Amphiprion_percula
ENSSDUG00000013215	-	99	76.667	ENSAPEG00000000869	scrt1b	99	76.667	Amphiprion_percula
ENSSDUG00000013215	-	100	88.629	ENSATEG00000011660	-	100	88.629	Anabas_testudineus
ENSSDUG00000013215	-	97	60.000	ENSATEG00000023998	scrt2	97	60.000	Anabas_testudineus
ENSSDUG00000013215	-	97	53.153	ENSATEG00000003195	-	97	53.153	Anabas_testudineus
ENSSDUG00000013215	-	99	76.589	ENSATEG00000002302	scrt1b	99	77.667	Anabas_testudineus
ENSSDUG00000013215	-	69	79.126	ENSACAG00000016109	SCRT2	92	79.126	Anolis_carolinensis
ENSSDUG00000013215	-	99	77.000	ENSACLG00000007162	scrt1b	99	77.000	Astatotilapia_calliptera
ENSSDUG00000013215	-	100	94.059	ENSACLG00000012046	-	100	94.059	Astatotilapia_calliptera
ENSSDUG00000013215	-	83	67.600	ENSAMXG00000034158	scrt2	87	67.600	Astyanax_mexicanus
ENSSDUG00000013215	-	99	79.866	ENSAMXG00000038085	scrt1a	99	79.866	Astyanax_mexicanus
ENSSDUG00000013215	-	99	74.497	ENSAMXG00000042624	SCRT1	100	74.497	Astyanax_mexicanus
ENSSDUG00000013215	-	55	59.509	WBGene00000468	ces-1	79	47.186	Caenorhabditis_elegans
ENSSDUG00000013215	-	99	76.174	ENSCPBG00000018899	SCRT1	99	76.174	Chrysemys_picta_bellii
ENSSDUG00000013215	-	87	57.303	ENSCPBG00000027613	SCRT2	100	57.303	Chrysemys_picta_bellii
ENSSDUG00000013215	-	100	93.645	ENSCSEG00000014892	-	100	93.645	Cynoglossus_semilaevis
ENSSDUG00000013215	-	97	60.828	ENSCSEG00000021542	scrt2	97	60.828	Cynoglossus_semilaevis
ENSSDUG00000013215	-	99	75.585	ENSCSEG00000008596	scrt1b	99	77.000	Cynoglossus_semilaevis
ENSSDUG00000013215	-	99	76.333	ENSCVAG00000009561	scrt1b	99	76.333	Cyprinodon_variegatus
ENSSDUG00000013215	-	100	95.987	ENSCVAG00000003190	-	100	95.987	Cyprinodon_variegatus
ENSSDUG00000013215	-	97	59.561	ENSCVAG00000021038	scrt2	97	59.561	Cyprinodon_variegatus
ENSSDUG00000013215	-	99	77.517	ENSDARG00000040214	scrt1b	99	77.517	Danio_rerio
ENSSDUG00000013215	-	99	78.859	ENSDARG00000100821	scrt1a	99	78.859	Danio_rerio
ENSSDUG00000013215	-	96	61.290	ENSELUG00000023883	scrt2	96	59.752	Esox_lucius
ENSSDUG00000013215	-	100	78.000	ENSELUG00000022228	scrt1a	100	78.000	Esox_lucius
ENSSDUG00000013215	-	99	78.716	ENSELUG00000005435	scrt1b	98	78.716	Esox_lucius
ENSSDUG00000013215	-	67	78.500	ENSFALG00000005718	SCRT2	97	67.200	Ficedula_albicollis
ENSSDUG00000013215	-	97	58.478	ENSFDAG00000008733	SCRT1	97	58.478	Fukomys_damarensis
ENSSDUG00000013215	-	97	64.948	ENSFHEG00000005732	scrt2	96	64.948	Fundulus_heteroclitus
ENSSDUG00000013215	-	100	95.652	ENSFHEG00000009794	-	100	95.652	Fundulus_heteroclitus
ENSSDUG00000013215	-	99	77.000	ENSFHEG00000014820	scrt1b	99	77.000	Fundulus_heteroclitus
ENSSDUG00000013215	-	99	75.585	ENSGMOG00000000629	scrt1b	99	75.585	Gadus_morhua
ENSSDUG00000013215	-	97	56.604	ENSGMOG00000019519	scrt2	96	56.604	Gadus_morhua
ENSSDUG00000013215	-	56	97.619	ENSGMOG00000013833	-	56	97.619	Gadus_morhua
ENSSDUG00000013215	-	97	61.034	ENSGALG00000028912	SCRT2	97	61.724	Gallus_gallus
ENSSDUG00000013215	-	100	86.288	ENSGAFG00000009650	-	100	86.288	Gambusia_affinis
ENSSDUG00000013215	-	99	77.000	ENSGAFG00000007636	scrt1b	99	77.000	Gambusia_affinis
ENSSDUG00000013215	-	97	62.215	ENSGAFG00000003093	scrt2	97	62.215	Gambusia_affinis
ENSSDUG00000013215	-	100	90.301	ENSGACG00000004072	-	100	90.301	Gasterosteus_aculeatus
ENSSDUG00000013215	-	99	74.497	ENSGACG00000008982	scrt1b	99	74.497	Gasterosteus_aculeatus
ENSSDUG00000013215	-	96	60.764	ENSGAGG00000020761	SCRT2	96	61.111	Gopherus_agassizii
ENSSDUG00000013215	-	99	76.689	ENSGAGG00000011736	SCRT1	99	76.689	Gopherus_agassizii
ENSSDUG00000013215	-	59	81.356	ENSGAGG00000020760	-	68	81.921	Gopherus_agassizii
ENSSDUG00000013215	-	99	77.000	ENSHBUG00000016621	scrt1b	99	77.000	Haplochromis_burtoni
ENSSDUG00000013215	-	97	63.448	ENSHBUG00000012492	scrt2	96	63.448	Haplochromis_burtoni
ENSSDUG00000013215	-	100	96.990	ENSHBUG00000019101	-	100	96.990	Haplochromis_burtoni
ENSSDUG00000013215	-	99	76.667	ENSHCOG00000016704	scrt1b	99	76.667	Hippocampus_comes
ENSSDUG00000013215	-	97	59.871	ENSHCOG00000008116	scrt2	97	59.871	Hippocampus_comes
ENSSDUG00000013215	-	100	73.770	ENSHCOG00000016179	-	100	73.770	Hippocampus_comes
ENSSDUG00000013215	-	99	71.284	ENSIPUG00000005547	-	100	71.284	Ictalurus_punctatus
ENSSDUG00000013215	-	98	78.644	ENSIPUG00000004551	scrt1a	99	78.644	Ictalurus_punctatus
ENSSDUG00000013215	-	97	60.188	ENSKMAG00000018087	scrt2	97	60.188	Kryptolebias_marmoratus
ENSSDUG00000013215	-	99	77.000	ENSKMAG00000005484	scrt1b	99	77.000	Kryptolebias_marmoratus
ENSSDUG00000013215	-	100	95.017	ENSKMAG00000009489	-	100	95.017	Kryptolebias_marmoratus
ENSSDUG00000013215	-	97	59.688	ENSLBEG00000015419	scrt2	97	59.502	Labrus_bergylta
ENSSDUG00000013215	-	100	92.642	ENSLBEG00000023388	-	100	92.642	Labrus_bergylta
ENSSDUG00000013215	-	99	75.839	ENSLACG00000003588	SCRT1	99	75.839	Latimeria_chalumnae
ENSSDUG00000013215	-	99	79.195	ENSLOCG00000007573	scrt1b	99	79.195	Lepisosteus_oculatus
ENSSDUG00000013215	-	97	53.251	ENSLOCG00000002246	scrt2	97	53.211	Lepisosteus_oculatus
ENSSDUG00000013215	-	96	91.852	ENSMFAG00000035496	SCRT1	92	88.966	Macaca_fascicularis
ENSSDUG00000013215	-	99	75.920	ENSMAMG00000011698	scrt1b	99	77.000	Mastacembelus_armatus
ENSSDUG00000013215	-	97	60.000	ENSMAMG00000001291	scrt2	97	59.688	Mastacembelus_armatus
ENSSDUG00000013215	-	100	96.990	ENSMZEG00005026702	-	100	96.990	Maylandia_zebra
ENSSDUG00000013215	-	99	77.000	ENSMZEG00005005627	scrt1b	99	77.000	Maylandia_zebra
ENSSDUG00000013215	-	97	63.448	ENSMZEG00005026445	scrt2	96	63.448	Maylandia_zebra
ENSSDUG00000013215	-	65	80.829	ENSMGAG00000016579	SCRT2	80	80.829	Meleagris_gallopavo
ENSSDUG00000013215	-	99	75.000	ENSMMOG00000003327	scrt1b	99	75.000	Mola_mola
ENSSDUG00000013215	-	97	61.076	ENSMMOG00000009272	scrt2	97	60.883	Mola_mola
ENSSDUG00000013215	-	100	93.667	ENSMMOG00000018345	-	100	93.667	Mola_mola
ENSSDUG00000013215	-	99	76.589	ENSMALG00000012704	scrt1b	99	77.667	Monopterus_albus
ENSSDUG00000013215	-	97	62.671	ENSMALG00000013656	scrt2	96	62.671	Monopterus_albus
ENSSDUG00000013215	-	60	68.649	ENSNGAG00000020815	Scrt2	91	67.895	Nannospalax_galili
ENSSDUG00000013215	-	99	73.913	ENSNBRG00000013983	scrt1b	99	73.913	Neolamprologus_brichardi
ENSSDUG00000013215	-	97	63.103	ENSNBRG00000007221	scrt2	96	63.103	Neolamprologus_brichardi
ENSSDUG00000013215	-	100	97.324	ENSNBRG00000014882	-	100	97.324	Neolamprologus_brichardi
ENSSDUG00000013215	-	97	60.188	ENSONIG00000016758	scrt2	97	60.188	Oreochromis_niloticus
ENSSDUG00000013215	-	97	92.131	ENSONIG00000019809	-	100	92.131	Oreochromis_niloticus
ENSSDUG00000013215	-	99	77.000	ENSONIG00000006007	scrt1b	99	77.000	Oreochromis_niloticus
ENSSDUG00000013215	-	97	57.045	ENSONIG00000003152	-	96	57.045	Oreochromis_niloticus
ENSSDUG00000013215	-	97	60.188	ENSORLG00000024051	scrt2	97	60.188	Oryzias_latipes
ENSSDUG00000013215	-	100	89.769	ENSORLG00000022825	-	100	89.769	Oryzias_latipes
ENSSDUG00000013215	-	99	75.585	ENSORLG00000025651	scrt1b	99	76.333	Oryzias_latipes
ENSSDUG00000013215	-	99	75.585	ENSORLG00020012967	scrt1b	99	76.333	Oryzias_latipes_hni
ENSSDUG00000013215	-	97	60.188	ENSORLG00020011478	scrt2	97	60.188	Oryzias_latipes_hni
ENSSDUG00000013215	-	100	89.769	ENSORLG00015010104	-	100	89.769	Oryzias_latipes_hsok
ENSSDUG00000013215	-	99	75.585	ENSORLG00015019165	scrt1b	99	76.333	Oryzias_latipes_hsok
ENSSDUG00000013215	-	97	60.188	ENSORLG00015005524	scrt2	97	60.188	Oryzias_latipes_hsok
ENSSDUG00000013215	-	100	92.308	ENSOMEG00000000286	-	100	92.308	Oryzias_melastigma
ENSSDUG00000013215	-	97	60.188	ENSOMEG00000002661	scrt2	97	60.188	Oryzias_melastigma
ENSSDUG00000013215	-	99	75.585	ENSOMEG00000003925	scrt1b	99	76.333	Oryzias_melastigma
ENSSDUG00000013215	-	99	78.188	ENSPKIG00000022303	SCRT1	99	78.188	Paramormyrops_kingsleyae
ENSSDUG00000013215	-	99	79.195	ENSPKIG00000020085	scrt1a	99	79.195	Paramormyrops_kingsleyae
ENSSDUG00000013215	-	97	64.626	ENSPMGG00000016561	scrt2	96	64.626	Periophthalmus_magnuspinnatus
ENSSDUG00000013215	-	100	88.963	ENSPMGG00000021402	-	100	88.963	Periophthalmus_magnuspinnatus
ENSSDUG00000013215	-	99	73.579	ENSPMGG00000002260	scrt1b	99	73.579	Periophthalmus_magnuspinnatus
ENSSDUG00000013215	-	99	77.000	ENSPFOG00000017719	scrt1b	99	77.000	Poecilia_formosa
ENSSDUG00000013215	-	100	95.987	ENSPFOG00000005616	-	100	95.987	Poecilia_formosa
ENSSDUG00000013215	-	97	59.875	ENSPFOG00000007738	scrt2	97	59.875	Poecilia_formosa
ENSSDUG00000013215	-	99	77.000	ENSPLAG00000009876	scrt1b	99	77.000	Poecilia_latipinna
ENSSDUG00000013215	-	97	64.828	ENSPLAG00000005765	scrt2	96	64.828	Poecilia_latipinna
ENSSDUG00000013215	-	100	95.987	ENSPLAG00000011718	-	100	95.987	Poecilia_latipinna
ENSSDUG00000013215	-	97	64.828	ENSPMEG00000001538	scrt2	96	64.828	Poecilia_mexicana
ENSSDUG00000013215	-	99	77.000	ENSPMEG00000013274	scrt1b	99	77.000	Poecilia_mexicana
ENSSDUG00000013215	-	100	95.987	ENSPMEG00000011706	-	100	95.987	Poecilia_mexicana
ENSSDUG00000013215	-	97	59.875	ENSPREG00000001147	scrt2	97	59.875	Poecilia_reticulata
ENSSDUG00000013215	-	99	77.000	ENSPREG00000018985	scrt1b	99	77.000	Poecilia_reticulata
ENSSDUG00000013215	-	100	95.318	ENSPREG00000012166	-	100	95.318	Poecilia_reticulata
ENSSDUG00000013215	-	97	63.448	ENSPNYG00000013109	scrt2	96	63.448	Pundamilia_nyererei
ENSSDUG00000013215	-	99	77.000	ENSPNYG00000017733	scrt1b	99	77.000	Pundamilia_nyererei
ENSSDUG00000013215	-	100	96.656	ENSPNYG00000008865	-	100	96.656	Pundamilia_nyererei
ENSSDUG00000013215	-	99	73.826	ENSPNAG00000027880	-	100	74.161	Pygocentrus_nattereri
ENSSDUG00000013215	-	99	79.866	ENSPNAG00000017415	scrt1a	99	79.866	Pygocentrus_nattereri
ENSSDUG00000013215	-	99	77.517	ENSSFOG00015001195	SCRT1	99	77.517	Scleropages_formosus
ENSSDUG00000013215	-	100	92.409	ENSSMAG00000005122	-	100	92.409	Scophthalmus_maximus
ENSSDUG00000013215	-	100	76.744	ENSSMAG00000019207	scrt1b	100	76.744	Scophthalmus_maximus
ENSSDUG00000013215	-	100	100.000	ENSSLDG00000016454	-	100	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000013215	-	97	59.688	ENSSLDG00000013565	scrt2	97	59.688	Seriola_lalandi_dorsalis
ENSSDUG00000013215	-	99	77.667	ENSSLDG00000017166	scrt1b	99	77.667	Seriola_lalandi_dorsalis
ENSSDUG00000013215	-	97	62.069	ENSSPUG00000018637	SCRT2	97	62.069	Sphenodon_punctatus
ENSSDUG00000013215	-	100	96.990	ENSSPAG00000006788	-	100	96.990	Stegastes_partitus
ENSSDUG00000013215	-	99	77.667	ENSSPAG00000002200	scrt1b	99	77.667	Stegastes_partitus
ENSSDUG00000013215	-	97	63.793	ENSSPAG00000014018	scrt2	96	63.793	Stegastes_partitus
ENSSDUG00000013215	-	67	78.392	ENSTGUG00000006801	SCRT2	99	67.068	Taeniopygia_guttata
ENSSDUG00000013215	-	97	61.146	ENSTRUG00000007620	scrt2	97	61.146	Takifugu_rubripes
ENSSDUG00000013215	-	99	75.585	ENSTRUG00000011637	scrt1b	100	75.585	Takifugu_rubripes
ENSSDUG00000013215	-	86	81.395	ENSTRUG00000019558	-	82	82.171	Takifugu_rubripes
ENSSDUG00000013215	-	100	89.967	ENSTRUG00000012719	-	100	90.635	Takifugu_rubripes
ENSSDUG00000013215	-	97	65.306	ENSTNIG00000012473	scrt2	97	65.306	Tetraodon_nigroviridis
ENSSDUG00000013215	-	99	76.000	ENSTNIG00000018384	scrt1b	99	76.000	Tetraodon_nigroviridis
ENSSDUG00000013215	-	99	77.333	ENSXCOG00000019675	scrt1b	99	77.333	Xiphophorus_couchianus
ENSSDUG00000013215	-	100	85.619	ENSXCOG00000019861	-	100	85.619	Xiphophorus_couchianus
ENSSDUG00000013215	-	97	61.889	ENSXCOG00000014367	scrt2	97	61.889	Xiphophorus_couchianus
ENSSDUG00000013215	-	97	59.561	ENSXMAG00000028567	scrt2	97	59.561	Xiphophorus_maculatus
ENSSDUG00000013215	-	99	77.333	ENSXMAG00000027885	scrt1b	99	77.333	Xiphophorus_maculatus
ENSSDUG00000013215	-	100	95.318	ENSXMAG00000015353	-	100	95.318	Xiphophorus_maculatus