EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000013311 (Gene tree)
Gene ID: 111221036
Gene Symbol: prdm14
Alias: fc16b12|wu:fc16b12
Full Name: PR/SET domain 14
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 4501 bases
Position: chrBDQW01000079.1:1200831-1205331
Accession: 111221036
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000018280	zf-C2H2	PF00096.26	9e-21	1	2
ENSSDUP00000018280	zf-C2H2	PF00096.26	9e-21	2	2
ENSSDUP00000018280	zf-met	PF12874.7	4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000018612	-	1815	XM_022744361	ENSSDUP00000018280	604 (aa)	XP_022600082	UPI000BBF314F

Gene Model

Click here to download ENSSDUG00000013311's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000013311's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000013311	prdm14	55	32.768	ENSSDUG00000013048	-	81	32.558
ENSSDUG00000013311	prdm14	54	41.892	ENSSDUG00000019071	-	70	37.500
ENSSDUG00000013311	prdm14	54	37.815	ENSSDUG00000018835	PRDM15	63	37.815
ENSSDUG00000013311	prdm14	51	36.364	ENSSDUG00000020397	prdm5	95	36.686
ENSSDUG00000013311	prdm14	54	40.476	ENSSDUG00000023498	prdm12b	68	36.059

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000013311	prdm14	100	75.122	ENSACIG00000022698	prdm14	100	78.049	Amphilophus_citrinellus
ENSSDUG00000013311	prdm14	100	75.285	ENSACLG00000025407	prdm14	100	79.316	Astatotilapia_calliptera
ENSSDUG00000013311	prdm14	64	72.093	ENSAMXG00000000512	prdm14	77	72.093	Astyanax_mexicanus
ENSSDUG00000013311	prdm14	88	51.681	ENSBTAG00000000060	PRDM14	67	65.879	Bos_taurus
ENSSDUG00000013311	prdm14	88	50.794	ENSCHIG00000009297	PRDM14	67	65.535	Capra_hircus
ENSSDUG00000013311	prdm14	66	63.591	ENSTSYG00000010610	PRDM14	91	65.879	Carlito_syrichta
ENSSDUG00000013311	prdm14	62	64.987	ENSCPOG00000027176	PRDM14	73	64.987	Cavia_porcellus
ENSSDUG00000013311	prdm14	63	56.510	ENSCCAG00000026032	PRDM14	65	58.594	Cebus_capucinus
ENSSDUG00000013311	prdm14	87	50.089	ENSCLAG00000001937	PRDM14	66	64.362	Chinchilla_lanigera
ENSSDUG00000013311	prdm14	83	73.214	ENSGACG00000002829	prdm14	100	73.016	Gasterosteus_aculeatus
ENSSDUG00000013311	prdm14	100	84.934	ENSHBUG00000019660	prdm14	100	85.265	Haplochromis_burtoni
ENSSDUG00000013311	prdm14	100	85.762	ENSMZEG00005021597	prdm14	100	85.762	Maylandia_zebra
ENSSDUG00000013311	prdm14	100	85.430	ENSNBRG00000023669	prdm14	100	85.430	Neolamprologus_brichardi
ENSSDUG00000013311	prdm14	86	52.022	ENSODEG00000003245	PRDM14	95	51.654	Octodon_degus
ENSSDUG00000013311	prdm14	68	61.687	ENSOARG00000003528	PRDM14	77	65.274	Ovis_aries
ENSSDUG00000013311	prdm14	100	84.437	ENSPNYG00000001938	prdm14	100	84.768	Pundamilia_nyererei
ENSSDUG00000013311	prdm14	100	98.675	ENSSLDG00000006506	prdm14	100	98.675	Seriola_lalandi_dorsalis
ENSSDUG00000013311	prdm14	62	86.595	ENSTNIG00000008194	prdm14	99	86.595	Tetraodon_nigroviridis