EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000013320 (Gene tree)
Gene ID: 111228938
Gene Symbol: upf1
Alias: rent1|wu:fi40f07|wu:fj48a01|zgc:55472
Full Name: regulator of nonsense transcripts 1-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 11697 bases
Position: chrBDQW01000226.1:3679303-3690999
Accession: 111228938
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000018341	UPF1_Zn_bind	PF09416.10	1.8e-75	1	1
ENSSDUP00000018286	UPF1_Zn_bind	PF09416.10	1.9e-75	1	1
ENSSDUP00000018341	ResIII	PF04851.15	2.4e-05	1	1
ENSSDUP00000018286	ResIII	PF04851.15	2.4e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000018672	-	3309	-	ENSSDUP00000018341	1102 (aa)	-	-
ENSSDUT00000018618	-	3673	XM_022755054	ENSSDUP00000018286	1115 (aa)	XP_022610775	UPI000BBF1253

Gene Model

Click here to download ENSSDUG00000013320's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03013	RNA transport	KEGG
sdu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000013320's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000013320	upf1	100	92.761	ENSSDUG00000009629	-	100	92.046

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000013320	upf1	100	90.853	ENSG00000005007	UPF1	100	89.886	Homo_sapiens
ENSSDUG00000013320	upf1	100	92.755	ENSAPOG00000010916	-	100	92.039	Acanthochromis_polyacanthus
ENSSDUG00000013320	upf1	100	98.746	ENSAPOG00000023773	upf1	100	98.746	Acanthochromis_polyacanthus
ENSSDUG00000013320	upf1	100	90.376	ENSAMEG00000011474	UPF1	100	89.414	Ailuropoda_melanoleuca
ENSSDUG00000013320	upf1	93	92.514	ENSACIG00000010985	-	100	91.275	Amphilophus_citrinellus
ENSSDUG00000013320	upf1	100	96.505	ENSACIG00000019949	upf1	100	96.505	Amphilophus_citrinellus
ENSSDUG00000013320	upf1	100	92.755	ENSAOCG00000006352	-	100	92.039	Amphiprion_ocellaris
ENSSDUG00000013320	upf1	100	98.835	ENSAOCG00000018519	upf1	100	98.835	Amphiprion_ocellaris
ENSSDUG00000013320	upf1	100	92.665	ENSAPEG00000006292	-	100	92.039	Amphiprion_percula
ENSSDUG00000013320	upf1	100	98.835	ENSAPEG00000016344	upf1	100	98.835	Amphiprion_percula
ENSSDUG00000013320	upf1	100	92.755	ENSATEG00000016606	-	100	92.039	Anabas_testudineus
ENSSDUG00000013320	upf1	100	98.834	ENSATEG00000017867	upf1	100	98.834	Anabas_testudineus
ENSSDUG00000013320	upf1	95	92.537	ENSAPLG00000009175	UPF1	100	91.418	Anas_platyrhynchos
ENSSDUG00000013320	upf1	95	90.739	ENSANAG00000024107	UPF1	95	89.616	Aotus_nancymaae
ENSSDUG00000013320	upf1	100	92.487	ENSACLG00000022630	-	100	91.860	Astatotilapia_calliptera
ENSSDUG00000013320	upf1	100	96.595	ENSACLG00000007181	upf1	100	96.595	Astatotilapia_calliptera
ENSSDUG00000013320	upf1	100	93.817	ENSAMXG00000042187	upf1	100	93.280	Astyanax_mexicanus
ENSSDUG00000013320	upf1	100	90.393	ENSBTAG00000020922	UPF1	100	89.432	Bos_taurus
ENSSDUG00000013320	upf1	80	54.353	WBGene00004880	smg-2	83	54.353	Caenorhabditis_elegans
ENSSDUG00000013320	upf1	100	89.983	ENSCJAG00000019627	UPF1	100	89.024	Callithrix_jacchus
ENSSDUG00000013320	upf1	100	90.157	ENSCAFG00000014578	UPF1	100	89.199	Canis_familiaris
ENSSDUG00000013320	upf1	100	91.029	ENSCAFG00020012347	UPF1	100	90.062	Canis_lupus_dingo
ENSSDUG00000013320	upf1	100	91.270	ENSCHIG00000011018	UPF1	100	90.300	Capra_hircus
ENSSDUG00000013320	upf1	95	92.142	ENSTSYG00000008877	UPF1	98	91.020	Carlito_syrichta
ENSSDUG00000013320	upf1	96	91.304	ENSCAPG00000005758	UPF1	95	90.926	Cavia_aperea
ENSSDUG00000013320	upf1	100	91.143	ENSCPOG00000025463	UPF1	100	90.168	Cavia_porcellus
ENSSDUG00000013320	upf1	100	90.853	ENSCCAG00000032175	UPF1	100	89.886	Cebus_capucinus
ENSSDUG00000013320	upf1	94	92.113	ENSCATG00000040306	UPF1	98	90.833	Cercocebus_atys
ENSSDUG00000013320	upf1	95	91.955	ENSCLAG00000004037	UPF1	99	91.020	Chinchilla_lanigera
ENSSDUG00000013320	upf1	100	90.853	ENSCSAG00000005276	UPF1	100	89.886	Chlorocebus_sabaeus
ENSSDUG00000013320	upf1	100	91.600	ENSCPBG00000012513	UPF1	100	90.451	Chrysemys_picta_bellii
ENSSDUG00000013320	upf1	76	79.930	ENSCING00000021399	-	99	79.577	Ciona_intestinalis
ENSSDUG00000013320	upf1	99	71.479	ENSCSAVG00000006533	-	99	70.578	Ciona_savignyi
ENSSDUG00000013320	upf1	95	92.049	ENSCANG00000029819	UPF1	97	90.926	Colobus_angolensis_palliatus
ENSSDUG00000013320	upf1	100	90.901	ENSCGRG00001021067	Upf1	100	90.106	Cricetulus_griseus_chok1gshd
ENSSDUG00000013320	upf1	95	91.674	ENSCGRG00000013480	Upf1	98	90.739	Cricetulus_griseus_crigri
ENSSDUG00000013320	upf1	100	89.884	ENSCSEG00000017239	upf1	100	90.331	Cynoglossus_semilaevis
ENSSDUG00000013320	upf1	100	93.196	ENSCSEG00000016159	-	100	91.764	Cynoglossus_semilaevis
ENSSDUG00000013320	upf1	100	92.039	ENSCVAG00000010561	upf1	100	91.413	Cyprinodon_variegatus
ENSSDUG00000013320	upf1	100	93.728	ENSDARG00000016302	upf1	100	93.190	Danio_rerio
ENSSDUG00000013320	upf1	95	89.626	ENSDORG00000009984	Upf1	95	88.598	Dipodomys_ordii
ENSSDUG00000013320	upf1	83	72.572	FBgn0030354	Upf1	81	71.443	Drosophila_melanogaster
ENSSDUG00000013320	upf1	53	87.086	ENSEBUG00000010069	upf1	96	87.417	Eptatretus_burgeri
ENSSDUG00000013320	upf1	100	91.182	ENSEASG00005006549	UPF1	100	90.300	Equus_asinus_asinus
ENSSDUG00000013320	upf1	100	91.182	ENSECAG00000010639	UPF1	100	90.300	Equus_caballus
ENSSDUG00000013320	upf1	100	94.355	ENSELUG00000020917	upf1	100	92.500	Esox_lucius
ENSSDUG00000013320	upf1	100	92.513	ENSELUG00000012916	-	100	92.335	Esox_lucius
ENSSDUG00000013320	upf1	100	90.157	ENSFCAG00000009757	UPF1	100	89.199	Felis_catus
ENSSDUG00000013320	upf1	95	93.146	ENSFALG00000009312	UPF1	96	91.925	Ficedula_albicollis
ENSSDUG00000013320	upf1	95	91.862	ENSFDAG00000014816	UPF1	99	90.926	Fukomys_damarensis
ENSSDUG00000013320	upf1	87	94.763	ENSFHEG00000016276	-	96	94.763	Fundulus_heteroclitus
ENSSDUG00000013320	upf1	100	93.131	ENSFHEG00000006428	upf1	100	91.615	Fundulus_heteroclitus
ENSSDUG00000013320	upf1	100	90.973	ENSGMOG00000007541	upf1	100	90.531	Gadus_morhua
ENSSDUG00000013320	upf1	100	91.278	ENSGALG00000003220	UPF1	100	90.132	Gallus_gallus
ENSSDUG00000013320	upf1	100	92.397	ENSGAFG00000004831	upf1	100	91.503	Gambusia_affinis
ENSSDUG00000013320	upf1	62	96.686	ENSGAFG00000015443	-	85	96.686	Gambusia_affinis
ENSSDUG00000013320	upf1	100	91.741	ENSGAGG00000022217	UPF1	100	91.030	Gopherus_agassizii
ENSSDUG00000013320	upf1	95	93.006	ENSGGOG00000002608	UPF1	99	91.871	Gorilla_gorilla
ENSSDUG00000013320	upf1	88	97.436	ENSHBUG00000014694	upf1	100	97.436	Haplochromis_burtoni
ENSSDUG00000013320	upf1	86	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSSDUG00000013320	upf1	100	89.895	ENSHGLG00000010900	UPF1	100	89.111	Heterocephalus_glaber_female
ENSSDUG00000013320	upf1	95	90.271	ENSHGLG00100005904	UPF1	96	89.336	Heterocephalus_glaber_male
ENSSDUG00000013320	upf1	100	92.039	ENSHCOG00000008918	upf1	100	91.413	Hippocampus_comes
ENSSDUG00000013320	upf1	100	93.996	ENSIPUG00000005108	UPF1	100	93.369	Ictalurus_punctatus
ENSSDUG00000013320	upf1	100	90.765	ENSSTOG00000009196	UPF1	100	89.886	Ictidomys_tridecemlineatus
ENSSDUG00000013320	upf1	100	90.184	ENSJJAG00000023151	Upf1	100	89.395	Jaculus_jaculus
ENSSDUG00000013320	upf1	100	92.308	ENSKMAG00000004962	upf1	100	91.592	Kryptolebias_marmoratus
ENSSDUG00000013320	upf1	100	92.493	ENSLBEG00000027848	-	100	91.778	Labrus_bergylta
ENSSDUG00000013320	upf1	100	98.029	ENSLBEG00000014862	upf1	100	98.029	Labrus_bergylta
ENSSDUG00000013320	upf1	64	92.437	ENSLACG00000008482	UPF1	100	90.476	Latimeria_chalumnae
ENSSDUG00000013320	upf1	100	93.286	ENSLOCG00000002072	upf1	100	92.659	Lepisosteus_oculatus
ENSSDUG00000013320	upf1	100	89.878	ENSLAFG00000014963	UPF1	100	89.005	Loxodonta_africana
ENSSDUG00000013320	upf1	100	90.614	ENSMFAG00000037748	UPF1	100	89.649	Macaca_fascicularis
ENSSDUG00000013320	upf1	100	90.376	ENSMMUG00000023286	UPF1	100	89.414	Macaca_mulatta
ENSSDUG00000013320	upf1	100	90.614	ENSMNEG00000000046	UPF1	100	89.649	Macaca_nemestrina
ENSSDUG00000013320	upf1	95	92.049	ENSMLEG00000028404	UPF1	99	90.926	Mandrillus_leucophaeus
ENSSDUG00000013320	upf1	100	99.013	ENSMAMG00000006229	upf1	100	99.013	Mastacembelus_armatus
ENSSDUG00000013320	upf1	100	92.493	ENSMAMG00000006231	-	100	91.868	Mastacembelus_armatus
ENSSDUG00000013320	upf1	100	97.581	ENSMZEG00005003489	upf1	100	97.581	Maylandia_zebra
ENSSDUG00000013320	upf1	100	92.487	ENSMZEG00005016386	-	100	91.860	Maylandia_zebra
ENSSDUG00000013320	upf1	95	92.056	ENSMGAG00000004745	UPF1	100	90.935	Meleagris_gallopavo
ENSSDUG00000013320	upf1	95	91.674	ENSMAUG00000011398	Upf1	95	90.739	Mesocricetus_auratus
ENSSDUG00000013320	upf1	100	90.853	ENSMICG00000001659	UPF1	100	89.974	Microcebus_murinus
ENSSDUG00000013320	upf1	100	90.026	ENSMOCG00000005699	Upf1	100	89.326	Microtus_ochrogaster
ENSSDUG00000013320	upf1	100	95.964	ENSMMOG00000007881	upf1	100	95.964	Mola_mola
ENSSDUG00000013320	upf1	95	90.019	ENSMMOG00000007537	-	99	89.266	Mola_mola
ENSSDUG00000013320	upf1	100	90.182	ENSMODG00000003689	UPF1	100	89.314	Monodelphis_domestica
ENSSDUG00000013320	upf1	100	95.605	ENSMALG00000000144	upf1	100	95.695	Monopterus_albus
ENSSDUG00000013320	upf1	100	91.444	ENSMALG00000018100	-	100	90.731	Monopterus_albus
ENSSDUG00000013320	upf1	100	90.813	MGP_CAROLIEiJ_G0031142	Upf1	100	90.018	Mus_caroli
ENSSDUG00000013320	upf1	100	90.813	ENSMUSG00000058301	Upf1	100	90.018	Mus_musculus
ENSSDUG00000013320	upf1	100	90.813	MGP_PahariEiJ_G0021607	Upf1	100	90.018	Mus_pahari
ENSSDUG00000013320	upf1	100	90.813	MGP_SPRETEiJ_G0032260	Upf1	100	90.018	Mus_spretus
ENSSDUG00000013320	upf1	100	91.029	ENSMPUG00000015516	UPF1	100	90.062	Mustela_putorius_furo
ENSSDUG00000013320	upf1	99	90.909	ENSMLUG00000012122	UPF1	99	89.938	Myotis_lucifugus
ENSSDUG00000013320	upf1	100	89.616	ENSNGAG00000024107	Upf1	100	88.831	Nannospalax_galili
ENSSDUG00000013320	upf1	100	89.129	ENSNBRG00000022069	-	100	90.822	Neolamprologus_brichardi
ENSSDUG00000013320	upf1	100	93.817	ENSNBRG00000000670	upf1	100	93.184	Neolamprologus_brichardi
ENSSDUG00000013320	upf1	95	86.436	ENSNLEG00000006062	UPF1	99	85.313	Nomascus_leucogenys
ENSSDUG00000013320	upf1	83	86.174	ENSMEUG00000014146	-	83	83.902	Notamacropus_eugenii
ENSSDUG00000013320	upf1	95	86.389	ENSOPRG00000014018	UPF1	88	90.252	Ochotona_princeps
ENSSDUG00000013320	upf1	100	90.957	ENSODEG00000012426	UPF1	100	90.160	Octodon_degus
ENSSDUG00000013320	upf1	100	92.487	ENSONIG00000012729	-	100	91.860	Oreochromis_niloticus
ENSSDUG00000013320	upf1	100	97.670	ENSONIG00000010452	upf1	100	97.670	Oreochromis_niloticus
ENSSDUG00000013320	upf1	100	90.314	ENSOANG00000004568	UPF1	100	89.180	Ornithorhynchus_anatinus
ENSSDUG00000013320	upf1	100	92.487	ENSORLG00000008453	upf1	100	91.145	Oryzias_latipes
ENSSDUG00000013320	upf1	100	92.404	ENSORLG00020014758	upf1	100	91.063	Oryzias_latipes_hni
ENSSDUG00000013320	upf1	100	92.404	ENSORLG00015010165	upf1	100	91.063	Oryzias_latipes_hsok
ENSSDUG00000013320	upf1	100	92.844	ENSOMEG00000003665	upf1	100	91.503	Oryzias_melastigma
ENSSDUG00000013320	upf1	100	90.941	ENSOGAG00000012866	UPF1	100	89.974	Otolemur_garnettii
ENSSDUG00000013320	upf1	96	89.221	ENSOARG00000010739	UPF1	100	88.134	Ovis_aries
ENSSDUG00000013320	upf1	95	92.049	ENSPPAG00000043884	UPF1	96	90.926	Pan_paniscus
ENSSDUG00000013320	upf1	100	90.157	ENSPPRG00000023470	UPF1	100	89.199	Panthera_pardus
ENSSDUG00000013320	upf1	95	91.038	ENSPTIG00000010159	UPF1	99	89.906	Panthera_tigris_altaica
ENSSDUG00000013320	upf1	100	90.614	ENSPTRG00000010721	UPF1	100	89.649	Pan_troglodytes
ENSSDUG00000013320	upf1	100	90.614	ENSPANG00000008847	UPF1	100	89.649	Papio_anubis
ENSSDUG00000013320	upf1	90	95.924	ENSPKIG00000006069	upf1	97	95.924	Paramormyrops_kingsleyae
ENSSDUG00000013320	upf1	70	91.443	ENSPSIG00000009491	UPF1	100	89.783	Pelodiscus_sinensis
ENSSDUG00000013320	upf1	100	92.665	ENSPMGG00000017327	upf1	100	92.018	Periophthalmus_magnuspinnatus
ENSSDUG00000013320	upf1	100	90.026	ENSPEMG00000001085	Upf1	100	89.239	Peromyscus_maniculatus_bairdii
ENSSDUG00000013320	upf1	100	86.489	ENSPMAG00000001206	upf1	100	85.867	Petromyzon_marinus
ENSSDUG00000013320	upf1	100	91.549	ENSPCIG00000006156	UPF1	100	90.581	Phascolarctos_cinereus
ENSSDUG00000013320	upf1	100	94.529	ENSPLAG00000018155	-	100	93.363	Poecilia_latipinna
ENSSDUG00000013320	upf1	100	92.397	ENSPLAG00000016232	-	100	91.503	Poecilia_latipinna
ENSSDUG00000013320	upf1	100	94.170	ENSPMEG00000011443	-	100	93.274	Poecilia_mexicana
ENSSDUG00000013320	upf1	100	92.315	ENSPMEG00000016319	-	100	91.421	Poecilia_mexicana
ENSSDUG00000013320	upf1	100	94.270	ENSPREG00000009940	upf1	100	93.196	Poecilia_reticulata
ENSSDUG00000013320	upf1	100	92.218	ENSPREG00000011247	-	100	91.324	Poecilia_reticulata
ENSSDUG00000013320	upf1	100	85.017	ENSPPYG00000009752	UPF1	100	84.233	Pongo_abelii
ENSSDUG00000013320	upf1	76	98.990	ENSPCAG00000012962	UPF1	76	98.990	Procavia_capensis
ENSSDUG00000013320	upf1	100	90.543	ENSPCOG00000023813	UPF1	100	89.667	Propithecus_coquereli
ENSSDUG00000013320	upf1	67	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSSDUG00000013320	upf1	100	92.487	ENSPNYG00000016731	-	100	91.860	Pundamilia_nyererei
ENSSDUG00000013320	upf1	100	97.581	ENSPNYG00000003694	upf1	100	97.581	Pundamilia_nyererei
ENSSDUG00000013320	upf1	100	93.907	ENSPNAG00000025614	upf1	100	93.369	Pygocentrus_nattereri
ENSSDUG00000013320	upf1	100	90.813	ENSRNOG00000020134	Upf1	100	90.018	Rattus_norvegicus
ENSSDUG00000013320	upf1	95	89.710	ENSRBIG00000013894	UPF1	98	91.515	Rhinopithecus_bieti
ENSSDUG00000013320	upf1	95	92.049	ENSRROG00000040935	UPF1	98	91.515	Rhinopithecus_roxellana
ENSSDUG00000013320	upf1	71	57.697	YMR080C	NAM7	84	56.916	Saccharomyces_cerevisiae
ENSSDUG00000013320	upf1	95	91.806	ENSSBOG00000023632	UPF1	96	90.689	Saimiri_boliviensis_boliviensis
ENSSDUG00000013320	upf1	95	92.437	ENSSHAG00000010499	UPF1	100	91.317	Sarcophilus_harrisii
ENSSDUG00000013320	upf1	100	93.560	ENSSFOG00015021095	upf1	100	92.755	Scleropages_formosus
ENSSDUG00000013320	upf1	100	92.583	ENSSMAG00000021018	-	100	91.778	Scophthalmus_maximus
ENSSDUG00000013320	upf1	100	97.491	ENSSMAG00000005055	upf1	100	97.491	Scophthalmus_maximus
ENSSDUG00000013320	upf1	100	99.103	ENSSLDG00000020868	upf1	100	99.103	Seriola_lalandi_dorsalis
ENSSDUG00000013320	upf1	100	92.761	ENSSLDG00000006878	-	100	92.046	Seriola_lalandi_dorsalis
ENSSDUG00000013320	upf1	100	91.578	ENSSPUG00000010538	UPF1	97	95.062	Sphenodon_punctatus
ENSSDUG00000013320	upf1	100	93.023	ENSSPAG00000011521	-	100	91.860	Stegastes_partitus
ENSSDUG00000013320	upf1	100	94.798	ENSSPAG00000000003	upf1	100	94.798	Stegastes_partitus
ENSSDUG00000013320	upf1	100	91.182	ENSSSCG00000039301	UPF1	99	91.887	Sus_scrofa
ENSSDUG00000013320	upf1	81	87.447	ENSTGUG00000001057	UPF1	100	91.272	Taeniopygia_guttata
ENSSDUG00000013320	upf1	100	91.682	ENSTRUG00000005131	-	100	90.787	Takifugu_rubripes
ENSSDUG00000013320	upf1	100	96.416	ENSTRUG00000000150	upf1	100	96.416	Takifugu_rubripes
ENSSDUG00000013320	upf1	100	87.566	ENSTTRG00000011544	UPF1	100	86.508	Tursiops_truncatus
ENSSDUG00000013320	upf1	100	91.029	ENSUAMG00000007093	UPF1	100	90.062	Ursus_americanus
ENSSDUG00000013320	upf1	95	93.113	ENSUMAG00000006652	UPF1	99	92.159	Ursus_maritimus
ENSSDUG00000013320	upf1	100	91.029	ENSVVUG00000007797	UPF1	100	90.062	Vulpes_vulpes
ENSSDUG00000013320	upf1	100	78.819	ENSXETG00000013602	upf1	100	77.691	Xenopus_tropicalis
ENSSDUG00000013320	upf1	94	92.653	ENSXCOG00000005764	-	99	91.698	Xiphophorus_couchianus
ENSSDUG00000013320	upf1	97	92.950	ENSXCOG00000015275	-	96	92.579	Xiphophorus_couchianus
ENSSDUG00000013320	upf1	100	93.094	ENSXMAG00000001703	-	100	92.735	Xiphophorus_maculatus
ENSSDUG00000013320	upf1	100	92.404	ENSXMAG00000002540	-	100	91.510	Xiphophorus_maculatus