EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000013393 (Gene tree)
Gene ID: 111220004
Gene Symbol: tdrkh
Alias: TDRD2|zgc:113056
Full Name: tudor and KH domain containing
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 13368 bases
Position: chrBDQW01000068.1:19240442-19253809
Accession: 111220004
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000018339	KH_1	PF00013.29	1.7e-15	1	1
ENSSDUP00000018323	KH_1	PF00013.29	1.7e-15	1	1
ENSSDUP00000018377	KH_1	PF00013.29	1.8e-15	1	1
ENSSDUP00000018339	TUDOR	PF00567.24	1.5e-26	1	1
ENSSDUP00000018323	TUDOR	PF00567.24	1.7e-26	1	1
ENSSDUP00000018377	TUDOR	PF00567.24	2.3e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000018711	-	1614	-	ENSSDUP00000018377	537 (aa)	-	-
ENSSDUT00000018673	-	3164	-	ENSSDUP00000018339	535 (aa)	-	-
ENSSDUT00000018656	-	2656	XM_022742928	ENSSDUP00000018323	562 (aa)	XP_022598649	UPI000BBE5EE0

Gene Model

Click here to download ENSSDUG00000013393's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000013393's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000013393	tdrkh	100	81.947	ENSAPOG00000012653	tdrkh	100	81.416	Acanthochromis_polyacanthus
ENSSDUG00000013393	tdrkh	98	74.953	ENSACIG00000010318	tdrkh	98	75.780	Amphilophus_citrinellus
ENSSDUG00000013393	tdrkh	100	82.655	ENSAOCG00000020623	tdrkh	100	82.124	Amphiprion_ocellaris
ENSSDUG00000013393	tdrkh	100	82.655	ENSAPEG00000018388	tdrkh	100	82.124	Amphiprion_percula
ENSSDUG00000013393	tdrkh	100	83.511	ENSATEG00000023809	tdrkh	100	83.186	Anabas_testudineus
ENSSDUG00000013393	tdrkh	100	74.113	ENSACLG00000003017	tdrkh	100	74.113	Astatotilapia_calliptera
ENSSDUG00000013393	tdrkh	99	61.989	ENSAMXG00000011664	tdrkh	94	61.239	Astyanax_mexicanus
ENSSDUG00000013393	tdrkh	100	70.318	ENSCSEG00000002894	tdrkh	99	70.141	Cynoglossus_semilaevis
ENSSDUG00000013393	tdrkh	60	81.373	ENSCVAG00000020347	tdrkh	77	81.373	Cyprinodon_variegatus
ENSSDUG00000013393	tdrkh	99	61.702	ENSDARG00000053474	tdrkh	100	57.746	Danio_rerio
ENSSDUG00000013393	tdrkh	100	66.373	ENSELUG00000024537	tdrkh	94	65.278	Esox_lucius
ENSSDUG00000013393	tdrkh	100	77.305	ENSFHEG00000003544	tdrkh	100	77.305	Fundulus_heteroclitus
ENSSDUG00000013393	tdrkh	100	66.843	ENSGMOG00000009304	tdrkh	94	66.138	Gadus_morhua
ENSSDUG00000013393	tdrkh	100	72.340	ENSGAFG00000010754	tdrkh	100	72.163	Gambusia_affinis
ENSSDUG00000013393	tdrkh	100	73.592	ENSGACG00000015258	tdrkh	94	73.592	Gasterosteus_aculeatus
ENSSDUG00000013393	tdrkh	100	73.936	ENSHBUG00000017609	tdrkh	100	73.936	Haplochromis_burtoni
ENSSDUG00000013393	tdrkh	99	61.239	ENSIPUG00000009673	tdrkh	99	60.531	Ictalurus_punctatus
ENSSDUG00000013393	tdrkh	100	75.355	ENSKMAG00000016638	tdrkh	93	74.468	Kryptolebias_marmoratus
ENSSDUG00000013393	tdrkh	100	78.938	ENSLBEG00000027323	tdrkh	97	78.761	Labrus_bergylta
ENSSDUG00000013393	tdrkh	99	51.134	ENSLOCG00000011381	tdrkh	99	50.611	Lepisosteus_oculatus
ENSSDUG00000013393	tdrkh	100	78.723	ENSMAMG00000020343	tdrkh	100	78.546	Mastacembelus_armatus
ENSSDUG00000013393	tdrkh	100	74.113	ENSMZEG00005006755	tdrkh	100	74.113	Maylandia_zebra
ENSSDUG00000013393	tdrkh	98	74.194	ENSMMOG00000020663	tdrkh	92	74.674	Mola_mola
ENSSDUG00000013393	tdrkh	100	78.191	ENSMALG00000015401	tdrkh	100	78.014	Monopterus_albus
ENSSDUG00000013393	tdrkh	100	70.922	ENSNBRG00000023815	tdrkh	100	70.922	Neolamprologus_brichardi
ENSSDUG00000013393	tdrkh	100	70.390	ENSORLG00000029204	tdrkh	99	70.035	Oryzias_latipes
ENSSDUG00000013393	tdrkh	99	69.811	ENSORLG00020016168	tdrkh	98	69.882	Oryzias_latipes_hni
ENSSDUG00000013393	tdrkh	99	68.053	ENSORLG00015014094	tdrkh	99	65.780	Oryzias_latipes_hsok
ENSSDUG00000013393	tdrkh	100	72.518	ENSOMEG00000015063	tdrkh	92	72.518	Oryzias_melastigma
ENSSDUG00000013393	tdrkh	100	58.053	ENSPKIG00000017597	tdrkh	100	57.522	Paramormyrops_kingsleyae
ENSSDUG00000013393	tdrkh	99	70.865	ENSPMGG00000019362	tdrkh	100	68.881	Periophthalmus_magnuspinnatus
ENSSDUG00000013393	tdrkh	100	73.002	ENSPFOG00000013032	tdrkh	94	72.824	Poecilia_formosa
ENSSDUG00000013393	tdrkh	100	73.179	ENSPLAG00000004193	tdrkh	100	73.002	Poecilia_latipinna
ENSSDUG00000013393	tdrkh	100	73.002	ENSPMEG00000016502	tdrkh	100	72.824	Poecilia_mexicana
ENSSDUG00000013393	tdrkh	100	70.745	ENSPREG00000004213	tdrkh	94	70.213	Poecilia_reticulata
ENSSDUG00000013393	tdrkh	98	72.727	ENSPNYG00000022818	tdrkh	97	73.626	Pundamilia_nyererei
ENSSDUG00000013393	tdrkh	99	60.847	ENSPNAG00000008783	tdrkh	94	61.170	Pygocentrus_nattereri
ENSSDUG00000013393	tdrkh	100	56.184	ENSSFOG00015001048	tdrkh	100	56.714	Scleropages_formosus
ENSSDUG00000013393	tdrkh	100	84.369	ENSSMAG00000001532	tdrkh	100	84.014	Scophthalmus_maximus
ENSSDUG00000013393	tdrkh	100	98.399	ENSSLDG00000017418	tdrkh	100	98.399	Seriola_lalandi_dorsalis
ENSSDUG00000013393	tdrkh	100	83.363	ENSSPAG00000006435	tdrkh	95	82.832	Stegastes_partitus
ENSSDUG00000013393	tdrkh	98	70.699	ENSTRUG00000006644	tdrkh	97	71.115	Takifugu_rubripes
ENSSDUG00000013393	tdrkh	99	71.378	ENSTNIG00000003157	tdrkh	99	71.201	Tetraodon_nigroviridis
ENSSDUG00000013393	tdrkh	86	82.192	ENSXCOG00000016972	tdrkh	98	87.037	Xiphophorus_couchianus
ENSSDUG00000013393	tdrkh	100	70.035	ENSXMAG00000014756	tdrkh	100	69.858	Xiphophorus_maculatus