EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000013773 (Gene tree)
Gene ID: 111239142
Gene Symbol: chd7
Alias: si:ch211-197o6.2|wu:cegs2051|wu:fb37f10|wu:fb39h04|wu:fd19h06
Full Name: chromodomain helicase DNA binding protein 7
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 69776 bases
Position: chrBDQW01001892.1:586052-655827
Accession: 111239142
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000018871	ResIII	PF04851.15	1.5e-06	1	1
ENSSDUP00000018871	BRK	PF07533.16	8.6e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000019210	-	10592	XM_022768943	ENSSDUP00000018871	3352 (aa)	XP_022624664	-

Gene Model

Click here to download ENSSDUG00000013773's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000013773's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000013773	chd7	55	68.949	ENSSDUG00000006139	chd9	68	69.408

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000013773	chd7	83	89.031	ENSAPOG00000009351	chd7	97	88.683	Acanthochromis_polyacanthus
ENSSDUG00000013773	chd7	82	80.426	ENSAMEG00000005699	CHD7	83	73.545	Ailuropoda_melanoleuca
ENSSDUG00000013773	chd7	66	94.112	ENSACIG00000001590	chd7	98	94.112	Amphilophus_citrinellus
ENSSDUG00000013773	chd7	74	89.706	ENSAOCG00000002337	chd7	99	94.899	Amphiprion_ocellaris
ENSSDUG00000013773	chd7	100	87.834	ENSAPEG00000010332	chd7	100	88.635	Amphiprion_percula
ENSSDUG00000013773	chd7	68	94.222	ENSATEG00000002590	chd7	98	94.222	Anabas_testudineus
ENSSDUG00000013773	chd7	68	79.108	ENSACAG00000005760	CHD7	72	78.834	Anolis_carolinensis
ENSSDUG00000013773	chd7	51	61.317	ENSANAG00000035300	CHD7	81	73.016	Aotus_nancymaae
ENSSDUG00000013773	chd7	69	72.287	ENSAMXG00000006180	chd7	95	69.454	Astyanax_mexicanus
ENSSDUG00000013773	chd7	68	78.922	ENSBTAG00000021841	CHD7	88	66.176	Bos_taurus
ENSSDUG00000013773	chd7	88	79.409	ENSCAFG00000007167	CHD7	84	71.000	Canis_familiaris
ENSSDUG00000013773	chd7	88	78.560	ENSCAFG00020015856	CHD7	84	71.000	Canis_lupus_dingo
ENSSDUG00000013773	chd7	68	79.409	ENSCHIG00000011729	CHD7	82	65.217	Capra_hircus
ENSSDUG00000013773	chd7	86	79.014	ENSTSYG00000004018	CHD7	60	73.545	Carlito_syrichta
ENSSDUG00000013773	chd7	52	60.237	ENSCAPG00000016749	CHD8	60	62.460	Cavia_aperea
ENSSDUG00000013773	chd7	71	74.086	ENSCAPG00000007952	CHD7	82	73.545	Cavia_aperea
ENSSDUG00000013773	chd7	71	79.412	ENSCPOG00000013385	CHD7	83	71.795	Cavia_porcellus
ENSSDUG00000013773	chd7	52	65.834	ENSCPOG00000002538	CHD8	60	68.297	Cavia_porcellus
ENSSDUG00000013773	chd7	51	62.140	ENSCATG00000020229	CHD7	76	72.821	Cercocebus_atys
ENSSDUG00000013773	chd7	50	66.176	ENSCLAG00000001966	CHD8	60	68.666	Chinchilla_lanigera
ENSSDUG00000013773	chd7	86	79.569	ENSCLAG00000004679	CHD7	82	73.684	Chinchilla_lanigera
ENSSDUG00000013773	chd7	51	62.140	ENSCSAG00000014349	CHD7	76	72.821	Chlorocebus_sabaeus
ENSSDUG00000013773	chd7	50	81.122	ENSCHOG00000008478	CHD7	85	77.215	Choloepus_hoffmanni
ENSSDUG00000013773	chd7	78	81.301	ENSCPBG00000021517	CHD7	92	78.862	Chrysemys_picta_bellii
ENSSDUG00000013773	chd7	51	61.885	ENSCANG00000041382	CHD7	76	72.821	Colobus_angolensis_palliatus
ENSSDUG00000013773	chd7	69	79.825	ENSCGRG00001011949	Chd7	85	70.098	Cricetulus_griseus_chok1gshd
ENSSDUG00000013773	chd7	50	66.152	ENSCGRG00001014351	Chd8	63	68.720	Cricetulus_griseus_chok1gshd
ENSSDUG00000013773	chd7	50	66.152	ENSCGRG00000009710	Chd8	65	68.720	Cricetulus_griseus_crigri
ENSSDUG00000013773	chd7	69	74.590	ENSCGRG00000000481	Chd7	68	74.310	Cricetulus_griseus_crigri
ENSSDUG00000013773	chd7	71	86.128	ENSCSEG00000017886	chd7	96	85.733	Cynoglossus_semilaevis
ENSSDUG00000013773	chd7	98	81.675	ENSCVAG00000017584	chd7	99	82.099	Cyprinodon_variegatus
ENSSDUG00000013773	chd7	77	69.127	ENSDARG00000075211	chd7	95	69.773	Danio_rerio
ENSSDUG00000013773	chd7	93	79.426	ENSDORG00000003515	Chd7	63	72.872	Dipodomys_ordii
ENSSDUG00000013773	chd7	54	76.471	ENSETEG00000016689	-	55	76.242	Echinops_telfairi
ENSSDUG00000013773	chd7	76	79.475	ENSECAG00000001445	CHD7	71	72.308	Equus_caballus
ENSSDUG00000013773	chd7	82	83.682	ENSEEUG00000013559	CHD7	76	78.114	Erinaceus_europaeus
ENSSDUG00000013773	chd7	84	80.068	ENSELUG00000024442	chd7	92	80.478	Esox_lucius
ENSSDUG00000013773	chd7	67	79.359	ENSFALG00000005570	CHD7	98	56.197	Ficedula_albicollis
ENSSDUG00000013773	chd7	50	66.103	ENSFDAG00000011368	CHD8	60	68.745	Fukomys_damarensis
ENSSDUG00000013773	chd7	52	57.447	ENSFDAG00000000528	CHD7	82	74.074	Fukomys_damarensis
ENSSDUG00000013773	chd7	100	81.007	ENSFHEG00000001311	chd7	98	82.123	Fundulus_heteroclitus
ENSSDUG00000013773	chd7	56	86.083	ENSGMOG00000004232	chd7	90	86.430	Gadus_morhua
ENSSDUG00000013773	chd7	67	79.141	ENSGALG00000041080	CHD7	96	56.258	Gallus_gallus
ENSSDUG00000013773	chd7	80	82.607	ENSGAFG00000006858	chd7	95	83.633	Gambusia_affinis
ENSSDUG00000013773	chd7	70	82.601	ENSGACG00000014897	chd7	97	83.333	Gasterosteus_aculeatus
ENSSDUG00000013773	chd7	68	80.700	ENSGAGG00000017996	CHD7	92	79.876	Gopherus_agassizii
ENSSDUG00000013773	chd7	100	84.014	ENSHBUG00000019225	chd7	100	83.467	Haplochromis_burtoni
ENSSDUG00000013773	chd7	51	62.857	ENSHGLG00000017268	CHD7	82	68.944	Heterocephalus_glaber_female
ENSSDUG00000013773	chd7	51	62.857	ENSHGLG00100015649	CHD7	81	68.944	Heterocephalus_glaber_male
ENSSDUG00000013773	chd7	99	79.060	ENSHCOG00000014380	chd7	99	81.634	Hippocampus_comes
ENSSDUG00000013773	chd7	71	80.000	ENSIPUG00000007585	chd7	93	82.759	Ictalurus_punctatus
ENSSDUG00000013773	chd7	55	66.103	ENSSTOG00000001854	CHD8	61	68.641	Ictidomys_tridecemlineatus
ENSSDUG00000013773	chd7	86	79.349	ENSJJAG00000022064	Chd7	81	68.187	Jaculus_jaculus
ENSSDUG00000013773	chd7	98	83.993	ENSKMAG00000009724	chd7	98	83.208	Kryptolebias_marmoratus
ENSSDUG00000013773	chd7	100	83.393	ENSLBEG00000020842	chd7	100	83.289	Labrus_bergylta
ENSSDUG00000013773	chd7	50	67.456	ENSLACG00000011367	CHD8	63	67.456	Latimeria_chalumnae
ENSSDUG00000013773	chd7	67	72.097	ENSLACG00000002461	CHD7	98	56.843	Latimeria_chalumnae
ENSSDUG00000013773	chd7	63	74.869	ENSLOCG00000005062	chd7	80	74.603	Lepisosteus_oculatus
ENSSDUG00000013773	chd7	86	79.140	ENSLAFG00000000403	CHD7	81	74.074	Loxodonta_africana
ENSSDUG00000013773	chd7	69	79.173	ENSMFAG00000041825	CHD7	81	78.834	Macaca_fascicularis
ENSSDUG00000013773	chd7	51	62.140	ENSMMUG00000011584	CHD7	76	72.821	Macaca_mulatta
ENSSDUG00000013773	chd7	51	62.140	ENSMNEG00000040978	CHD7	78	72.821	Macaca_nemestrina
ENSSDUG00000013773	chd7	51	62.140	ENSMLEG00000038817	CHD7	76	72.821	Mandrillus_leucophaeus
ENSSDUG00000013773	chd7	100	85.099	ENSMAMG00000011569	chd7	100	84.540	Mastacembelus_armatus
ENSSDUG00000013773	chd7	100	84.005	ENSMZEG00005010646	chd7	100	83.398	Maylandia_zebra
ENSSDUG00000013773	chd7	83	81.810	ENSMAUG00000001000	Chd7	72	81.810	Mesocricetus_auratus
ENSSDUG00000013773	chd7	86	79.475	ENSMOCG00000011408	Chd7	76	78.911	Microtus_ochrogaster
ENSSDUG00000013773	chd7	54	65.437	ENSMMOG00000021538	-	90	82.105	Mola_mola
ENSSDUG00000013773	chd7	70	79.577	ENSMODG00000008488	CHD7	95	71.277	Monodelphis_domestica
ENSSDUG00000013773	chd7	74	87.818	ENSMALG00000004389	chd7	99	86.809	Monopterus_albus
ENSSDUG00000013773	chd7	50	66.078	MGP_CAROLIEiJ_G0019237	Chd8	67	68.641	Mus_caroli
ENSSDUG00000013773	chd7	87	79.349	MGP_CAROLIEiJ_G0025797	Chd7	79	72.632	Mus_caroli
ENSSDUG00000013773	chd7	86	79.269	ENSMUSG00000041235	Chd7	79	73.404	Mus_musculus
ENSSDUG00000013773	chd7	87	79.349	MGP_SPRETEiJ_G0026745	Chd7	81	73.404	Mus_spretus
ENSSDUG00000013773	chd7	58	79.014	ENSMPUG00000002338	CHD7	90	67.969	Mustela_putorius_furo
ENSSDUG00000013773	chd7	66	77.787	ENSMLUG00000015266	CHD7	84	73.016	Myotis_lucifugus
ENSSDUG00000013773	chd7	96	59.012	ENSNGAG00000010767	Chd7	84	68.009	Nannospalax_galili
ENSSDUG00000013773	chd7	75	80.094	ENSNBRG00000001280	chd7	98	79.708	Neolamprologus_brichardi
ENSSDUG00000013773	chd7	88	79.173	ENSNLEG00000002027	CHD7	81	74.603	Nomascus_leucogenys
ENSSDUG00000013773	chd7	69	73.713	ENSMEUG00000010045	CHD7	63	73.640	Notamacropus_eugenii
ENSSDUG00000013773	chd7	88	78.951	ENSODEG00000002424	CHD7	83	68.396	Octodon_degus
ENSSDUG00000013773	chd7	50	65.956	ENSODEG00000001047	CHD8	65	68.587	Octodon_degus
ENSSDUG00000013773	chd7	75	85.764	ENSONIG00000016614	chd7	100	78.317	Oreochromis_niloticus
ENSSDUG00000013773	chd7	69	79.491	ENSOCUG00000010034	CHD7	90	79.064	Oryctolagus_cuniculus
ENSSDUG00000013773	chd7	98	82.141	ENSORLG00000013492	chd7	98	81.490	Oryzias_latipes
ENSSDUG00000013773	chd7	50	59.650	ENSORLG00000012103	chd8	60	65.840	Oryzias_latipes
ENSSDUG00000013773	chd7	98	82.401	ENSORLG00020020002	chd7	98	81.452	Oryzias_latipes_hni
ENSSDUG00000013773	chd7	98	82.296	ENSORLG00015020858	chd7	98	81.326	Oryzias_latipes_hsok
ENSSDUG00000013773	chd7	99	81.724	ENSOMEG00000016881	chd7	98	81.755	Oryzias_melastigma
ENSSDUG00000013773	chd7	51	62.295	ENSOGAG00000013905	CHD7	79	73.016	Otolemur_garnettii
ENSSDUG00000013773	chd7	68	74.700	ENSOARG00000016176	CHD7	80	68.395	Ovis_aries
ENSSDUG00000013773	chd7	53	51.111	ENSPPAG00000033330	CHD7	81	74.603	Pan_paniscus
ENSSDUG00000013773	chd7	51	65.618	ENSPPAG00000039987	CHD8	61	68.210	Pan_paniscus
ENSSDUG00000013773	chd7	53	51.111	ENSPTRG00000020286	CHD7	82	74.603	Pan_troglodytes
ENSSDUG00000013773	chd7	51	62.140	ENSPANG00000018419	CHD7	76	72.821	Papio_anubis
ENSSDUG00000013773	chd7	77	71.573	ENSPKIG00000009637	chd7	98	55.934	Paramormyrops_kingsleyae
ENSSDUG00000013773	chd7	67	79.715	ENSPSIG00000012003	CHD7	97	57.011	Pelodiscus_sinensis
ENSSDUG00000013773	chd7	74	76.178	ENSPMGG00000018543	chd7	95	87.758	Periophthalmus_magnuspinnatus
ENSSDUG00000013773	chd7	85	80.363	ENSPEMG00000023028	Chd7	51	80.428	Peromyscus_maniculatus_bairdii
ENSSDUG00000013773	chd7	50	66.152	ENSPEMG00000022977	Chd8	63	68.720	Peromyscus_maniculatus_bairdii
ENSSDUG00000013773	chd7	66	81.647	ENSPCIG00000000025	-	73	81.647	Phascolarctos_cinereus
ENSSDUG00000013773	chd7	51	66.742	ENSPCIG00000020931	CHD8	69	73.807	Phascolarctos_cinereus
ENSSDUG00000013773	chd7	100	81.343	ENSPFOG00000004891	chd7	98	97.403	Poecilia_formosa
ENSSDUG00000013773	chd7	57	64.095	ENSPFOG00000010939	-	82	64.286	Poecilia_formosa
ENSSDUG00000013773	chd7	100	81.170	ENSPLAG00000023322	chd7	98	81.959	Poecilia_latipinna
ENSSDUG00000013773	chd7	77	83.889	ENSPMEG00000005879	chd7	71	92.593	Poecilia_mexicana
ENSSDUG00000013773	chd7	57	92.739	ENSPREG00000014744	chd7	96	78.682	Poecilia_reticulata
ENSSDUG00000013773	chd7	51	61.885	ENSPPYG00000018618	CHD7	82	74.603	Pongo_abelii
ENSSDUG00000013773	chd7	67	74.540	ENSPCAG00000000227	CHD7	64	74.117	Procavia_capensis
ENSSDUG00000013773	chd7	50	64.889	ENSPCOG00000013850	CHD7	83	73.545	Propithecus_coquereli
ENSSDUG00000013773	chd7	82	82.392	ENSPVAG00000011873	CHD7	68	82.392	Pteropus_vampyrus
ENSSDUG00000013773	chd7	73	87.873	ENSPNYG00000012490	chd7	99	79.449	Pundamilia_nyererei
ENSSDUG00000013773	chd7	62	77.939	ENSPNAG00000011245	chd7	89	77.883	Pygocentrus_nattereri
ENSSDUG00000013773	chd7	51	59.633	ENSPNAG00000003683	chd8	59	65.490	Pygocentrus_nattereri
ENSSDUG00000013773	chd7	50	65.857	ENSRNOG00000025011	Chd8	60	68.483	Rattus_norvegicus
ENSSDUG00000013773	chd7	92	68.246	ENSRNOG00000006689	Chd7	79	73.158	Rattus_norvegicus
ENSSDUG00000013773	chd7	51	61.885	ENSRBIG00000043575	CHD7	78	72.821	Rhinopithecus_bieti
ENSSDUG00000013773	chd7	51	61.885	ENSRROG00000008981	CHD7	76	74.603	Rhinopithecus_roxellana
ENSSDUG00000013773	chd7	81	79.499	ENSSHAG00000011522	CHD7	95	71.429	Sarcophilus_harrisii
ENSSDUG00000013773	chd7	71	77.468	ENSSFOG00015015077	chd7	97	78.182	Scleropages_formosus
ENSSDUG00000013773	chd7	54	100.000	ENSSLDG00000022595	chd7	98	98.571	Seriola_lalandi_dorsalis
ENSSDUG00000013773	chd7	53	79.539	ENSSARG00000003387	CHD7	66	82.240	Sorex_araneus
ENSSDUG00000013773	chd7	83	77.752	ENSSPUG00000009235	CHD7	79	77.625	Sphenodon_punctatus
ENSSDUG00000013773	chd7	77	90.092	ENSSPAG00000006320	chd7	99	90.092	Stegastes_partitus
ENSSDUG00000013773	chd7	87	79.569	ENSSSCG00000006231	CHD7	98	55.956	Sus_scrofa
ENSSDUG00000013773	chd7	66	79.412	ENSTGUG00000011196	CHD7	98	55.953	Taeniopygia_guttata
ENSSDUG00000013773	chd7	68	80.670	ENSTRUG00000008632	chd7	98	80.429	Takifugu_rubripes
ENSSDUG00000013773	chd7	67	97.778	ENSTNIG00000002647	chd7	97	94.118	Tetraodon_nigroviridis
ENSSDUG00000013773	chd7	65	86.218	ENSTBEG00000001540	CHD7	58	78.075	Tupaia_belangeri
ENSSDUG00000013773	chd7	64	77.306	ENSTTRG00000004221	CHD7	88	69.697	Tursiops_truncatus
ENSSDUG00000013773	chd7	83	78.309	ENSUAMG00000025734	CHD7	85	76.398	Ursus_americanus
ENSSDUG00000013773	chd7	79	78.389	ENSUMAG00000010436	CHD7	86	77.365	Ursus_maritimus
ENSSDUG00000013773	chd7	85	79.409	ENSVVUG00000018063	CHD7	83	71.000	Vulpes_vulpes
ENSSDUG00000013773	chd7	73	72.454	ENSXETG00000026004	chd8	84	64.931	Xenopus_tropicalis
ENSSDUG00000013773	chd7	100	81.272	ENSXMAG00000018590	chd7	98	82.458	Xiphophorus_maculatus