EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000013904 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 9341 bases
Position: chrBDQW01000035.1:976214-985554
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000019051	zf-C2H2	PF00096.26	1.2e-66	1	12
ENSSDUP00000019051	zf-C2H2	PF00096.26	1.2e-66	2	12
ENSSDUP00000019051	zf-C2H2	PF00096.26	1.2e-66	3	12
ENSSDUP00000019051	zf-C2H2	PF00096.26	1.2e-66	4	12
ENSSDUP00000019051	zf-C2H2	PF00096.26	1.2e-66	5	12
ENSSDUP00000019051	zf-C2H2	PF00096.26	1.2e-66	6	12
ENSSDUP00000019051	zf-C2H2	PF00096.26	1.2e-66	7	12
ENSSDUP00000019051	zf-C2H2	PF00096.26	1.2e-66	8	12
ENSSDUP00000019051	zf-C2H2	PF00096.26	1.2e-66	9	12
ENSSDUP00000019051	zf-C2H2	PF00096.26	1.2e-66	10	12
ENSSDUP00000019051	zf-C2H2	PF00096.26	1.2e-66	11	12
ENSSDUP00000019051	zf-C2H2	PF00096.26	1.2e-66	12	12
ENSSDUP00000019051	zf-met	PF12874.7	3.8e-20	1	4
ENSSDUP00000019051	zf-met	PF12874.7	3.8e-20	2	4
ENSSDUP00000019051	zf-met	PF12874.7	3.8e-20	3	4
ENSSDUP00000019051	zf-met	PF12874.7	3.8e-20	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000019392	-	3245	-	ENSSDUP00000019051	694 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000013904's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000013904's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000013904	-	73	50.909	ENSSDUG00000000838	-	62	50.909
ENSSDUG00000013904	-	86	48.148	ENSSDUG00000014574	znf526	89	48.148
ENSSDUG00000013904	-	87	54.264	ENSSDUG00000002195	-	85	53.448
ENSSDUG00000013904	-	57	36.765	ENSSDUG00000013335	-	69	36.765
ENSSDUG00000013904	-	60	38.462	ENSSDUG00000007752	scrt1b	52	38.824
ENSSDUG00000013904	-	65	55.046	ENSSDUG00000006808	-	78	55.046
ENSSDUG00000013904	-	67	32.967	ENSSDUG00000013280	-	55	30.579
ENSSDUG00000013904	-	65	39.394	ENSSDUG00000022410	gfi1ab	52	39.394
ENSSDUG00000013904	-	97	46.988	ENSSDUG00000011170	znf236	65	46.988
ENSSDUG00000013904	-	86	57.692	ENSSDUG00000008329	-	92	57.692
ENSSDUG00000013904	-	61	51.220	ENSSDUG00000004867	-	96	51.220
ENSSDUG00000013904	-	71	41.975	ENSSDUG00000000705	-	71	47.407
ENSSDUG00000013904	-	66	49.462	ENSSDUG00000020774	-	72	49.462
ENSSDUG00000013904	-	72	44.681	ENSSDUG00000009421	-	93	46.626
ENSSDUG00000013904	-	69	48.120	ENSSDUG00000023765	-	91	48.120
ENSSDUG00000013904	-	94	42.029	ENSSDUG00000019932	ZNF319	86	42.029
ENSSDUG00000013904	-	68	37.126	ENSSDUG00000004144	znf710b	50	37.805
ENSSDUG00000013904	-	68	34.395	ENSSDUG00000018835	PRDM15	52	33.537
ENSSDUG00000013904	-	76	47.205	ENSSDUG00000020810	-	71	47.205
ENSSDUG00000013904	-	73	42.609	ENSSDUG00000022412	znf648	59	42.609
ENSSDUG00000013904	-	93	43.629	ENSSDUG00000007336	-	96	42.373
ENSSDUG00000013904	-	60	41.905	ENSSDUG00000018060	snai2	54	41.905
ENSSDUG00000013904	-	81	45.399	ENSSDUG00000009439	-	97	46.897
ENSSDUG00000013904	-	68	44.444	ENSSDUG00000006740	-	85	44.444
ENSSDUG00000013904	-	90	44.255	ENSSDUG00000005401	-	97	46.667
ENSSDUG00000013904	-	91	46.012	ENSSDUG00000015159	-	93	46.012
ENSSDUG00000013904	-	67	45.802	ENSSDUG00000004892	-	95	36.364
ENSSDUG00000013904	-	55	42.857	ENSSDUG00000000905	-	71	42.857
ENSSDUG00000013904	-	91	43.716	ENSSDUG00000006463	-	88	43.716
ENSSDUG00000013904	-	84	46.429	ENSSDUG00000000786	-	95	52.941
ENSSDUG00000013904	-	67	40.113	ENSSDUG00000011604	gfi1b	61	40.113
ENSSDUG00000013904	-	67	45.333	ENSSDUG00000015931	si:dkey-89b17.4	65	45.333
ENSSDUG00000013904	-	61	46.377	ENSSDUG00000022035	-	55	46.377
ENSSDUG00000013904	-	70	45.270	ENSSDUG00000020595	-	86	45.270
ENSSDUG00000013904	-	90	38.043	ENSSDUG00000002675	znf646	87	38.043
ENSSDUG00000013904	-	85	44.025	ENSSDUG00000004089	-	97	45.299
ENSSDUG00000013904	-	73	40.397	ENSSDUG00000012926	-	97	40.741
ENSSDUG00000013904	-	86	40.079	ENSSDUG00000016450	-	73	46.835
ENSSDUG00000013904	-	70	46.259	ENSSDUG00000006426	-	94	50.000
ENSSDUG00000013904	-	64	41.071	ENSSDUG00000019933	snai1a	53	38.614
ENSSDUG00000013904	-	62	46.199	ENSSDUG00000009553	-	58	46.199
ENSSDUG00000013904	-	62	48.466	ENSSDUG00000015182	-	65	48.466
ENSSDUG00000013904	-	63	38.393	ENSSDUG00000017250	-	70	38.393
ENSSDUG00000013904	-	68	39.423	ENSSDUG00000013215	-	61	39.423
ENSSDUG00000013904	-	85	42.767	ENSSDUG00000020783	-	68	42.767
ENSSDUG00000013904	-	67	45.588	ENSSDUG00000005323	-	94	42.945
ENSSDUG00000013904	-	68	44.860	ENSSDUG00000011654	gfi1aa	51	41.071
ENSSDUG00000013904	-	82	39.698	ENSSDUG00000022170	zbtb49	56	37.198
ENSSDUG00000013904	-	69	37.500	ENSSDUG00000014540	znf341	55	37.500
ENSSDUG00000013904	-	67	49.057	ENSSDUG00000008682	-	93	49.057
ENSSDUG00000013904	-	60	38.889	ENSSDUG00000022701	znf652	67	38.889
ENSSDUG00000013904	-	72	44.785	ENSSDUG00000004650	-	98	44.785
ENSSDUG00000013904	-	66	47.273	ENSSDUG00000009563	-	75	47.273
ENSSDUG00000013904	-	66	45.833	ENSSDUG00000002488	-	62	45.833
ENSSDUG00000013904	-	74	47.458	ENSSDUG00000008943	-	98	47.458
ENSSDUG00000013904	-	62	41.429	ENSSDUG00000001263	-	90	41.429
ENSSDUG00000013904	-	89	44.167	ENSSDUG00000000799	-	77	44.167
ENSSDUG00000013904	-	68	50.000	ENSSDUG00000004835	-	81	49.080
ENSSDUG00000013904	-	85	37.037	ENSSDUG00000021415	si:ch211-216l23.1	74	35.714
ENSSDUG00000013904	-	72	45.562	ENSSDUG00000020805	-	98	45.562
ENSSDUG00000013904	-	68	35.043	ENSSDUG00000010783	hinfp	56	33.846
ENSSDUG00000013904	-	68	47.879	ENSSDUG00000015204	-	95	47.879
ENSSDUG00000013904	-	60	41.346	ENSSDUG00000001918	znf366	57	41.346
ENSSDUG00000013904	-	73	49.045	ENSSDUG00000011244	-	84	49.045
ENSSDUG00000013904	-	74	43.243	ENSSDUG00000015622	-	73	46.386
ENSSDUG00000013904	-	86	40.637	ENSSDUG00000016734	-	69	42.945
ENSSDUG00000013904	-	97	44.141	ENSSDUG00000009534	-	74	46.012
ENSSDUG00000013904	-	67	32.973	ENSSDUG00000010305	-	66	32.456
ENSSDUG00000013904	-	62	43.103	ENSSDUG00000000889	-	90	43.103
ENSSDUG00000013904	-	58	44.099	ENSSDUG00000020788	-	88	44.099
ENSSDUG00000013904	-	74	46.951	ENSSDUG00000015013	-	64	46.951
ENSSDUG00000013904	-	91	45.600	ENSSDUG00000015254	-	96	45.600
ENSSDUG00000013904	-	68	35.152	ENSSDUG00000016704	zbtb47b	54	35.152
ENSSDUG00000013904	-	90	47.692	ENSSDUG00000000946	-	94	49.254
ENSSDUG00000013904	-	93	46.715	ENSSDUG00000015191	-	98	46.715
ENSSDUG00000013904	-	83	42.236	ENSSDUG00000022914	-	72	47.183
ENSSDUG00000013904	-	64	46.053	ENSSDUG00000002174	-	71	46.053
ENSSDUG00000013904	-	68	48.333	ENSSDUG00000009577	-	79	48.333
ENSSDUG00000013904	-	81	48.921	ENSSDUG00000019911	-	84	46.809
ENSSDUG00000013904	-	66	47.059	ENSSDUG00000023764	-	100	43.363
ENSSDUG00000013904	-	77	38.961	ENSSDUG00000009223	zbtb41	54	38.961
ENSSDUG00000013904	-	93	40.586	ENSSDUG00000000695	-	75	42.169
ENSSDUG00000013904	-	65	45.506	ENSSDUG00000013048	-	67	45.506
ENSSDUG00000013904	-	63	41.964	ENSSDUG00000020397	prdm5	82	41.964
ENSSDUG00000013904	-	92	47.287	ENSSDUG00000009601	-	97	48.466
ENSSDUG00000013904	-	93	43.478	ENSSDUG00000003003	znf319b	82	43.478

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000013904	-	99	87.446	ENSAPOG00000002213	-	99	93.229	Acanthochromis_polyacanthus
ENSSDUG00000013904	-	89	89.865	ENSACIG00000013163	-	90	89.865	Amphilophus_citrinellus
ENSSDUG00000013904	-	72	44.660	ENSACIG00000013149	-	87	44.099	Amphilophus_citrinellus
ENSSDUG00000013904	-	99	86.888	ENSAOCG00000013124	-	99	86.888	Amphiprion_ocellaris
ENSSDUG00000013904	-	99	87.302	ENSAPEG00000009997	-	99	87.302	Amphiprion_percula
ENSSDUG00000013904	-	92	94.333	ENSATEG00000004127	-	95	97.468	Anabas_testudineus
ENSSDUG00000013904	-	99	83.960	ENSACLG00000005708	-	99	83.960	Astatotilapia_calliptera
ENSSDUG00000013904	-	90	77.099	ENSCVAG00000014734	-	96	77.099	Cyprinodon_variegatus
ENSSDUG00000013904	-	70	40.606	FBgn0003567	su(Hw)	50	40.606	Drosophila_melanogaster
ENSSDUG00000013904	-	72	82.036	ENSFHEG00000014060	-	71	82.530	Fundulus_heteroclitus
ENSSDUG00000013904	-	90	70.154	ENSGMOG00000017526	-	97	70.154	Gadus_morhua
ENSSDUG00000013904	-	99	78.035	ENSGAFG00000011174	-	99	78.035	Gambusia_affinis
ENSSDUG00000013904	-	97	88.722	ENSGACG00000019550	-	100	88.722	Gasterosteus_aculeatus
ENSSDUG00000013904	-	99	84.104	ENSHBUG00000006662	-	99	84.104	Haplochromis_burtoni
ENSSDUG00000013904	-	68	85.409	ENSHCOG00000003041	-	96	85.409	Hippocampus_comes
ENSSDUG00000013904	-	99	81.385	ENSKMAG00000009979	-	99	81.385	Kryptolebias_marmoratus
ENSSDUG00000013904	-	100	84.648	ENSLBEG00000010165	-	97	92.704	Labrus_bergylta
ENSSDUG00000013904	-	90	98.077	ENSMAMG00000006312	-	99	98.077	Mastacembelus_armatus
ENSSDUG00000013904	-	99	83.960	ENSMZEG00005013913	-	99	83.960	Maylandia_zebra
ENSSDUG00000013904	-	89	95.203	ENSMMOG00000011282	-	93	95.203	Mola_mola
ENSSDUG00000013904	-	99	88.167	ENSMALG00000000494	-	99	88.167	Monopterus_albus
ENSSDUG00000013904	-	70	90.452	ENSNBRG00000007602	-	97	90.452	Neolamprologus_brichardi
ENSSDUG00000013904	-	93	59.073	ENSONIG00000003856	-	100	59.073	Oreochromis_niloticus
ENSSDUG00000013904	-	99	77.601	ENSORLG00000010117	-	99	76.990	Oryzias_latipes
ENSSDUG00000013904	-	99	77.457	ENSORLG00020000219	-	99	76.700	Oryzias_latipes_hni
ENSSDUG00000013904	-	86	93.750	ENSORLG00015000258	-	98	93.750	Oryzias_latipes_hsok
ENSSDUG00000013904	-	87	91.538	ENSOMEG00000018262	-	96	90.494	Oryzias_melastigma
ENSSDUG00000013904	-	90	87.302	ENSPFOG00000013455	-	99	87.302	Poecilia_formosa
ENSSDUG00000013904	-	92	88.000	ENSPLAG00000004027	-	89	88.000	Poecilia_latipinna
ENSSDUG00000013904	-	99	77.457	ENSPMEG00000007589	-	99	77.457	Poecilia_mexicana
ENSSDUG00000013904	-	88	95.769	ENSPREG00000000153	-	89	95.769	Poecilia_reticulata
ENSSDUG00000013904	-	88	43.265	ENSPNYG00000007781	-	99	41.520	Pundamilia_nyererei
ENSSDUG00000013904	-	98	84.291	ENSPNYG00000007814	-	90	94.862	Pundamilia_nyererei
ENSSDUG00000013904	-	94	94.964	ENSSMAG00000021251	-	100	94.964	Scophthalmus_maximus
ENSSDUG00000013904	-	100	99.424	ENSSLDG00000006994	-	100	99.424	Seriola_lalandi_dorsalis
ENSSDUG00000013904	-	99	87.861	ENSSPAG00000011524	-	99	87.861	Stegastes_partitus
ENSSDUG00000013904	-	94	89.474	ENSTRUG00000015687	-	97	93.333	Takifugu_rubripes
ENSSDUG00000013904	-	86	93.050	ENSTNIG00000008242	-	100	93.050	Tetraodon_nigroviridis
ENSSDUG00000013904	-	67	93.233	ENSXCOG00000015947	-	98	93.233	Xiphophorus_couchianus
ENSSDUG00000013904	-	85	93.233	ENSXMAG00000023291	-	93	93.233	Xiphophorus_maculatus