EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000013930 (Gene tree)
Gene ID: 111220350
Gene Symbol: a1cf
Alias: acf
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 10760 bases
Position: chrBDQW01000068.1:19364921-19375680
Accession: 111220350
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000019109	DND1_DSRM	PF14709.7	1.4e-26	1	1
ENSSDUP00000019109	RRM_1	PF00076.22	1.5e-41	1	3
ENSSDUP00000019109	RRM_1	PF00076.22	1.5e-41	2	3
ENSSDUP00000019109	RRM_1	PF00076.22	1.5e-41	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000019453	-	1779	XM_022743412	ENSSDUP00000019109	592 (aa)	XP_022599133	-

Gene Model

Click here to download ENSSDUG00000013930's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000013930's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000013930	a1cf	51	54.098	ENSSDUG00000017716	syncripl	55	53.443
ENSSDUG00000013930	a1cf	87	53.167	ENSSDUG00000022684	rbm47	84	50.536
ENSSDUG00000013930	a1cf	85	63.192	ENSSDUG00000020645	rbm46	88	64.931

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000013930	a1cf	100	77.612	ENSG00000148584	A1CF	100	87.129	Homo_sapiens
ENSSDUG00000013930	a1cf	100	87.162	ENSAPOG00000008259	a1cf	100	87.162	Acanthochromis_polyacanthus
ENSSDUG00000013930	a1cf	100	76.373	ENSAMEG00000000523	A1CF	100	75.954	Ailuropoda_melanoleuca
ENSSDUG00000013930	a1cf	100	87.480	ENSACIG00000008632	a1cf	100	88.455	Amphilophus_citrinellus
ENSSDUG00000013930	a1cf	100	87.829	ENSAOCG00000023744	a1cf	97	91.168	Amphiprion_ocellaris
ENSSDUG00000013930	a1cf	100	89.309	ENSAPEG00000009537	a1cf	100	89.638	Amphiprion_percula
ENSSDUG00000013930	a1cf	100	90.656	ENSATEG00000013720	a1cf	100	91.148	Anabas_testudineus
ENSSDUG00000013930	a1cf	100	76.490	ENSAPLG00000002964	A1CF	100	75.497	Anas_platyrhynchos
ENSSDUG00000013930	a1cf	100	75.954	ENSACAG00000015269	A1CF	100	75.954	Anolis_carolinensis
ENSSDUG00000013930	a1cf	100	76.451	ENSANAG00000019974	A1CF	100	75.456	Aotus_nancymaae
ENSSDUG00000013930	a1cf	100	86.416	ENSACLG00000017428	a1cf	100	86.579	Astatotilapia_calliptera
ENSSDUG00000013930	a1cf	100	76.885	ENSAMXG00000018180	a1cf	100	77.250	Astyanax_mexicanus
ENSSDUG00000013930	a1cf	100	75.788	ENSBTAG00000021195	A1CF	100	76.673	Bos_taurus
ENSSDUG00000013930	a1cf	100	77.446	ENSCJAG00000005045	A1CF	100	76.451	Callithrix_jacchus
ENSSDUG00000013930	a1cf	100	76.962	ENSCAFG00000015581	A1CF	100	76.119	Canis_familiaris
ENSSDUG00000013930	a1cf	100	76.962	ENSCAFG00020026421	A1CF	98	81.605	Canis_lupus_dingo
ENSSDUG00000013930	a1cf	100	77.446	ENSCHIG00000020411	A1CF	100	76.783	Capra_hircus
ENSSDUG00000013930	a1cf	94	76.977	ENSTSYG00000001755	A1CF	100	74.868	Carlito_syrichta
ENSSDUG00000013930	a1cf	100	72.886	ENSCAPG00000017386	A1CF	100	74.441	Cavia_aperea
ENSSDUG00000013930	a1cf	100	75.954	ENSCPOG00000009807	A1CF	100	75.124	Cavia_porcellus
ENSSDUG00000013930	a1cf	100	77.612	ENSCCAG00000018168	A1CF	100	76.451	Cebus_capucinus
ENSSDUG00000013930	a1cf	100	76.119	ENSCATG00000043715	A1CF	100	75.290	Cercocebus_atys
ENSSDUG00000013930	a1cf	100	76.325	ENSCLAG00000010424	A1CF	100	75.331	Chinchilla_lanigera
ENSSDUG00000013930	a1cf	100	77.280	ENSCSAG00000007032	A1CF	100	76.451	Chlorocebus_sabaeus
ENSSDUG00000013930	a1cf	98	72.955	ENSCHOG00000009089	A1CF	99	72.287	Choloepus_hoffmanni
ENSSDUG00000013930	a1cf	100	77.152	ENSCPBG00000026464	A1CF	100	75.993	Chrysemys_picta_bellii
ENSSDUG00000013930	a1cf	100	77.280	ENSCANG00000038032	A1CF	100	76.451	Colobus_angolensis_palliatus
ENSSDUG00000013930	a1cf	100	76.451	ENSCGRG00001017413	A1cf	100	75.954	Cricetulus_griseus_chok1gshd
ENSSDUG00000013930	a1cf	100	76.080	ENSCGRG00000017332	A1cf	100	75.622	Cricetulus_griseus_crigri
ENSSDUG00000013930	a1cf	100	89.884	ENSCSEG00000002361	a1cf	100	89.884	Cynoglossus_semilaevis
ENSSDUG00000013930	a1cf	100	89.836	ENSCVAG00000010520	a1cf	100	90.000	Cyprinodon_variegatus
ENSSDUG00000013930	a1cf	100	80.763	ENSDARG00000002968	a1cf	100	81.095	Danio_rerio
ENSSDUG00000013930	a1cf	100	76.949	ENSDNOG00000002829	A1CF	100	76.119	Dasypus_novemcinctus
ENSSDUG00000013930	a1cf	80	83.696	ENSETEG00000012527	A1CF	81	83.696	Echinops_telfairi
ENSSDUG00000013930	a1cf	100	77.152	ENSEASG00005012924	A1CF	100	76.159	Equus_asinus_asinus
ENSSDUG00000013930	a1cf	100	76.656	ENSECAG00000010424	A1CF	100	75.662	Equus_caballus
ENSSDUG00000013930	a1cf	79	66.808	ENSEEUG00000000013	A1CF	97	66.374	Erinaceus_europaeus
ENSSDUG00000013930	a1cf	100	82.372	ENSELUG00000003159	a1cf	100	82.537	Esox_lucius
ENSSDUG00000013930	a1cf	100	75.042	ENSFCAG00000011179	A1CF	100	74.295	Felis_catus
ENSSDUG00000013930	a1cf	100	75.828	ENSFALG00000013183	A1CF	100	74.834	Ficedula_albicollis
ENSSDUG00000013930	a1cf	100	74.959	ENSFDAG00000019371	A1CF	100	73.964	Fukomys_damarensis
ENSSDUG00000013930	a1cf	100	83.443	ENSFHEG00000019652	a1cf	96	90.625	Fundulus_heteroclitus
ENSSDUG00000013930	a1cf	100	79.174	ENSGMOG00000018943	a1cf	100	78.678	Gadus_morhua
ENSSDUG00000013930	a1cf	94	76.532	ENSGALG00000003765	A1CF	96	75.482	Gallus_gallus
ENSSDUG00000013930	a1cf	100	81.475	ENSGAFG00000014868	a1cf	100	81.475	Gambusia_affinis
ENSSDUG00000013930	a1cf	100	87.356	ENSGACG00000010241	a1cf	100	87.685	Gasterosteus_aculeatus
ENSSDUG00000013930	a1cf	96	76.339	ENSGAGG00000016508	A1CF	98	75.130	Gopherus_agassizii
ENSSDUG00000013930	a1cf	100	77.612	ENSGGOG00000009670	A1CF	100	76.119	Gorilla_gorilla
ENSSDUG00000013930	a1cf	100	88.293	ENSHBUG00000021959	a1cf	100	88.780	Haplochromis_burtoni
ENSSDUG00000013930	a1cf	100	76.451	ENSHGLG00000008955	A1CF	100	75.456	Heterocephalus_glaber_female
ENSSDUG00000013930	a1cf	100	75.788	ENSHGLG00100000518	A1CF	100	74.793	Heterocephalus_glaber_male
ENSSDUG00000013930	a1cf	100	75.812	ENSHCOG00000017669	a1cf	100	77.760	Hippocampus_comes
ENSSDUG00000013930	a1cf	89	85.343	ENSIPUG00000010367	a1cf	100	83.837	Ictalurus_punctatus
ENSSDUG00000013930	a1cf	100	86.829	ENSKMAG00000006568	a1cf	100	88.130	Kryptolebias_marmoratus
ENSSDUG00000013930	a1cf	99	88.871	ENSLBEG00000020994	a1cf	99	89.034	Labrus_bergylta
ENSSDUG00000013930	a1cf	100	77.778	ENSLACG00000008061	A1CF	100	76.606	Latimeria_chalumnae
ENSSDUG00000013930	a1cf	100	82.043	ENSLOCG00000006302	a1cf	100	81.219	Lepisosteus_oculatus
ENSSDUG00000013930	a1cf	100	76.617	ENSLAFG00000015462	A1CF	100	77.778	Loxodonta_africana
ENSSDUG00000013930	a1cf	100	76.119	ENSMFAG00000035948	A1CF	100	75.290	Macaca_fascicularis
ENSSDUG00000013930	a1cf	100	76.119	ENSMMUG00000007077	A1CF	100	75.290	Macaca_mulatta
ENSSDUG00000013930	a1cf	100	75.954	ENSMNEG00000031454	A1CF	100	75.124	Macaca_nemestrina
ENSSDUG00000013930	a1cf	100	77.280	ENSMLEG00000037223	A1CF	100	76.451	Mandrillus_leucophaeus
ENSSDUG00000013930	a1cf	100	88.216	ENSMAMG00000010402	a1cf	100	88.707	Mastacembelus_armatus
ENSSDUG00000013930	a1cf	100	91.092	ENSMZEG00005013245	a1cf	100	91.107	Maylandia_zebra
ENSSDUG00000013930	a1cf	100	76.033	ENSMGAG00000001507	A1CF	100	75.041	Meleagris_gallopavo
ENSSDUG00000013930	a1cf	100	76.285	ENSMAUG00000007422	A1cf	100	75.456	Mesocricetus_auratus
ENSSDUG00000013930	a1cf	100	74.876	ENSMICG00000003377	A1CF	100	75.702	Microcebus_murinus
ENSSDUG00000013930	a1cf	100	77.114	ENSMOCG00000021536	A1cf	100	76.119	Microtus_ochrogaster
ENSSDUG00000013930	a1cf	100	77.504	ENSMMOG00000009422	a1cf	100	78.125	Mola_mola
ENSSDUG00000013930	a1cf	89	77.612	ENSMODG00000016478	A1CF	97	77.239	Monodelphis_domestica
ENSSDUG00000013930	a1cf	100	83.389	ENSMALG00000012992	a1cf	100	84.122	Monopterus_albus
ENSSDUG00000013930	a1cf	100	76.783	MGP_CAROLIEiJ_G0022873	A1cf	100	75.788	Mus_caroli
ENSSDUG00000013930	a1cf	100	76.783	ENSMUSG00000052595	A1cf	99	81.605	Mus_musculus
ENSSDUG00000013930	a1cf	100	75.954	MGP_PahariEiJ_G0014366	A1cf	100	74.959	Mus_pahari
ENSSDUG00000013930	a1cf	100	76.539	MGP_SPRETEiJ_G0023792	A1cf	100	75.541	Mus_spretus
ENSSDUG00000013930	a1cf	100	71.144	ENSMPUG00000016971	A1CF	100	70.647	Mustela_putorius_furo
ENSSDUG00000013930	a1cf	100	76.578	ENSMLUG00000016071	A1CF	100	76.119	Myotis_lucifugus
ENSSDUG00000013930	a1cf	100	76.783	ENSNGAG00000015136	A1cf	100	75.788	Nannospalax_galili
ENSSDUG00000013930	a1cf	100	88.293	ENSNBRG00000001712	a1cf	100	88.780	Neolamprologus_brichardi
ENSSDUG00000013930	a1cf	100	77.446	ENSNLEG00000012028	A1CF	100	76.451	Nomascus_leucogenys
ENSSDUG00000013930	a1cf	94	76.140	ENSMEUG00000015909	A1CF	100	75.088	Notamacropus_eugenii
ENSSDUG00000013930	a1cf	88	69.623	ENSOPRG00000010667	A1CF	100	67.029	Ochotona_princeps
ENSSDUG00000013930	a1cf	100	88.130	ENSONIG00000019105	a1cf	100	88.455	Oreochromis_niloticus
ENSSDUG00000013930	a1cf	78	76.533	ENSOANG00000007360	A1CF	99	76.533	Ornithorhynchus_anatinus
ENSSDUG00000013930	a1cf	100	75.290	ENSOCUG00000011587	A1CF	100	74.295	Oryctolagus_cuniculus
ENSSDUG00000013930	a1cf	100	84.072	ENSORLG00000013342	a1cf	100	84.072	Oryzias_latipes
ENSSDUG00000013930	a1cf	100	85.179	ENSORLG00020000586	a1cf	100	85.505	Oryzias_latipes_hni
ENSSDUG00000013930	a1cf	100	85.179	ENSORLG00015018569	a1cf	100	85.505	Oryzias_latipes_hsok
ENSSDUG00000013930	a1cf	100	85.270	ENSOMEG00000013531	a1cf	100	85.270	Oryzias_melastigma
ENSSDUG00000013930	a1cf	100	76.285	ENSOGAG00000012884	A1CF	100	77.280	Otolemur_garnettii
ENSSDUG00000013930	a1cf	100	77.114	ENSOARG00000013695	A1CF	100	76.451	Ovis_aries
ENSSDUG00000013930	a1cf	95	77.622	ENSPPAG00000028115	A1CF	99	79.960	Pan_paniscus
ENSSDUG00000013930	a1cf	100	76.206	ENSPPRG00000012180	A1CF	100	75.456	Panthera_pardus
ENSSDUG00000013930	a1cf	100	76.206	ENSPTIG00000021223	A1CF	100	75.456	Panthera_tigris_altaica
ENSSDUG00000013930	a1cf	100	77.612	ENSPTRG00000002508	A1CF	100	76.119	Pan_troglodytes
ENSSDUG00000013930	a1cf	100	76.119	ENSPANG00000021988	A1CF	100	75.290	Papio_anubis
ENSSDUG00000013930	a1cf	100	81.426	ENSPKIG00000025176	a1cf	100	81.713	Paramormyrops_kingsleyae
ENSSDUG00000013930	a1cf	100	76.490	ENSPSIG00000010318	A1CF	100	75.166	Pelodiscus_sinensis
ENSSDUG00000013930	a1cf	98	73.070	ENSPMGG00000013359	a1cf	99	73.585	Periophthalmus_magnuspinnatus
ENSSDUG00000013930	a1cf	100	77.114	ENSPEMG00000015021	A1cf	100	76.119	Peromyscus_maniculatus_bairdii
ENSSDUG00000013930	a1cf	100	75.000	ENSPCIG00000002175	A1CF	100	75.662	Phascolarctos_cinereus
ENSSDUG00000013930	a1cf	100	89.414	ENSPFOG00000007437	-	100	89.739	Poecilia_formosa
ENSSDUG00000013930	a1cf	100	89.577	ENSPFOG00000006683	a1cf	100	89.902	Poecilia_formosa
ENSSDUG00000013930	a1cf	100	88.274	ENSPLAG00000001210	-	100	88.599	Poecilia_latipinna
ENSSDUG00000013930	a1cf	100	88.274	ENSPLAG00000000026	a1cf	100	88.599	Poecilia_latipinna
ENSSDUG00000013930	a1cf	100	80.619	ENSPMEG00000015529	-	100	80.945	Poecilia_mexicana
ENSSDUG00000013930	a1cf	100	79.316	ENSPMEG00000000921	a1cf	100	79.642	Poecilia_mexicana
ENSSDUG00000013930	a1cf	100	89.251	ENSPREG00000016298	a1cf	100	89.577	Poecilia_reticulata
ENSSDUG00000013930	a1cf	100	76.285	ENSPPYG00000002819	A1CF	100	75.290	Pongo_abelii
ENSSDUG00000013930	a1cf	79	59.833	ENSPCAG00000006463	A1CF	79	59.833	Procavia_capensis
ENSSDUG00000013930	a1cf	100	76.119	ENSPCOG00000024172	A1CF	100	76.783	Propithecus_coquereli
ENSSDUG00000013930	a1cf	100	89.919	ENSPNYG00000017944	a1cf	100	90.407	Pundamilia_nyererei
ENSSDUG00000013930	a1cf	100	83.087	ENSPNAG00000007704	a1cf	100	83.087	Pygocentrus_nattereri
ENSSDUG00000013930	a1cf	100	75.954	ENSRNOG00000033195	A1cf	100	74.959	Rattus_norvegicus
ENSSDUG00000013930	a1cf	100	71.901	ENSRBIG00000042892	A1CF	100	73.359	Rhinopithecus_bieti
ENSSDUG00000013930	a1cf	100	77.280	ENSRROG00000041398	A1CF	100	76.451	Rhinopithecus_roxellana
ENSSDUG00000013930	a1cf	100	77.537	ENSSBOG00000021930	A1CF	100	76.539	Saimiri_boliviensis_boliviensis
ENSSDUG00000013930	a1cf	100	76.821	ENSSHAG00000005096	A1CF	100	75.828	Sarcophilus_harrisii
ENSSDUG00000013930	a1cf	100	82.102	ENSSFOG00015011774	a1cf	100	82.266	Scleropages_formosus
ENSSDUG00000013930	a1cf	100	89.935	ENSSMAG00000013271	a1cf	100	90.260	Scophthalmus_maximus
ENSSDUG00000013930	a1cf	100	89.527	ENSSLDG00000004290	a1cf	100	89.527	Seriola_lalandi_dorsalis
ENSSDUG00000013930	a1cf	95	68.531	ENSSARG00000005940	A1CF	95	68.531	Sorex_araneus
ENSSDUG00000013930	a1cf	95	76.132	ENSSPUG00000006797	A1CF	95	74.739	Sphenodon_punctatus
ENSSDUG00000013930	a1cf	100	77.944	ENSSSCG00000010431	A1CF	100	77.280	Sus_scrofa
ENSSDUG00000013930	a1cf	100	77.190	ENSTGUG00000005090	A1CF	100	75.868	Taeniopygia_guttata
ENSSDUG00000013930	a1cf	100	85.668	ENSTRUG00000001982	a1cf	100	86.319	Takifugu_rubripes
ENSSDUG00000013930	a1cf	100	85.877	ENSTNIG00000003580	a1cf	100	85.877	Tetraodon_nigroviridis
ENSSDUG00000013930	a1cf	95	72.203	ENSTTRG00000013190	A1CF	94	71.678	Tursiops_truncatus
ENSSDUG00000013930	a1cf	100	75.290	ENSUAMG00000020065	A1CF	100	74.627	Ursus_americanus
ENSSDUG00000013930	a1cf	100	76.451	ENSUMAG00000011162	A1CF	100	75.622	Ursus_maritimus
ENSSDUG00000013930	a1cf	87	73.674	ENSVPAG00000006130	A1CF	86	72.538	Vicugna_pacos
ENSSDUG00000013930	a1cf	100	75.960	ENSVVUG00000002504	A1CF	100	75.124	Vulpes_vulpes
ENSSDUG00000013930	a1cf	100	71.144	ENSXETG00000006611	a1cf	100	70.978	Xenopus_tropicalis
ENSSDUG00000013930	a1cf	100	89.344	ENSXCOG00000003302	a1cf	100	89.344	Xiphophorus_couchianus
ENSSDUG00000013930	a1cf	100	90.656	ENSXMAG00000016703	a1cf	100	90.656	Xiphophorus_maculatus