EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000014177 (Gene tree)
Gene ID: 111230034
Gene Symbol: vars
Alias: CHUNP6879|im:7137378|vars2|wu:fb07a11|wu:fb07d10
Full Name: valyl-tRNA synthetase
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 13129 bases
Position: chrBDQW01000258.1:2495381-2508509
Accession: 111230034
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000019484	tRNA-synt_1g	PF09334.11	1.7e-12	1	1
ENSSDUP00000019484	Anticodon_1	PF08264.13	1.1e-36	1	1
ENSSDUP00000019484	tRNA-synt_1	PF00133.22	6.5e-208	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000019831	-	6327	XM_022756570	ENSSDUP00000019484	1277 (aa)	XP_022612291	UPI000BBE5B6A

Gene Model

Click here to download ENSSDUG00000014177's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu00970	Aminoacyl-tRNA biosynthesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000014177's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000014177	vars	77	49.701	ENSSDUG00000011598	vars2	96	48.015

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000014177	vars	100	64.236	ENSG00000204394	VARS	99	71.779	Homo_sapiens
ENSSDUG00000014177	vars	94	92.282	ENSAPOG00000020921	vars	96	92.033	Acanthochromis_polyacanthus
ENSSDUG00000014177	vars	94	92.282	ENSAPOG00000020691	vars	96	92.033	Acanthochromis_polyacanthus
ENSSDUG00000014177	vars	100	64.574	ENSAMEG00000006417	VARS	100	64.633	Ailuropoda_melanoleuca
ENSSDUG00000014177	vars	100	91.094	ENSACIG00000013752	vars	100	91.016	Amphilophus_citrinellus
ENSSDUG00000014177	vars	100	92.874	ENSAOCG00000002447	vars	99	92.717	Amphiprion_ocellaris
ENSSDUG00000014177	vars	100	92.796	ENSAPEG00000010638	vars	99	92.639	Amphiprion_percula
ENSSDUG00000014177	vars	100	88.750	ENSATEG00000020219	vars	100	88.516	Anabas_testudineus
ENSSDUG00000014177	vars	90	71.280	ENSACAG00000029133	-	99	71.280	Anolis_carolinensis
ENSSDUG00000014177	vars	100	64.081	ENSANAG00000015453	VARS	100	64.319	Aotus_nancymaae
ENSSDUG00000014177	vars	100	92.723	ENSACLG00000025699	vars	97	92.723	Astatotilapia_calliptera
ENSSDUG00000014177	vars	96	80.995	ENSAMXG00000017716	vars	96	80.914	Astyanax_mexicanus
ENSSDUG00000014177	vars	100	64.856	ENSBTAG00000005631	VARS	100	64.938	Bos_taurus
ENSSDUG00000014177	vars	100	64.158	ENSCJAG00000002604	VARS	100	64.396	Callithrix_jacchus
ENSSDUG00000014177	vars	100	64.391	ENSCAFG00000000636	VARS	100	64.297	Canis_familiaris
ENSSDUG00000014177	vars	94	65.591	ENSCAFG00020020790	VARS	96	65.486	Canis_lupus_dingo
ENSSDUG00000014177	vars	100	64.701	ENSCHIG00000011008	VARS	100	64.938	Capra_hircus
ENSSDUG00000014177	vars	100	64.003	ENSTSYG00000001567	VARS	100	64.114	Carlito_syrichta
ENSSDUG00000014177	vars	91	67.814	ENSCAPG00000013736	VARS	98	67.670	Cavia_aperea
ENSSDUG00000014177	vars	100	64.136	ENSCPOG00000000870	VARS	100	63.854	Cavia_porcellus
ENSSDUG00000014177	vars	100	64.059	ENSCCAG00000035656	VARS	100	64.142	Cebus_capucinus
ENSSDUG00000014177	vars	100	64.474	ENSCATG00000022394	VARS	100	64.628	Cercocebus_atys
ENSSDUG00000014177	vars	93	63.807	ENSCLAG00000009470	VARS	97	63.510	Chinchilla_lanigera
ENSSDUG00000014177	vars	100	64.241	ENSCSAG00000008784	VARS	100	64.551	Chlorocebus_sabaeus
ENSSDUG00000014177	vars	77	74.540	ENSCPBG00000007943	VARS	96	74.540	Chrysemys_picta_bellii
ENSSDUG00000014177	vars	100	64.396	ENSCANG00000033570	VARS	100	64.706	Colobus_angolensis_palliatus
ENSSDUG00000014177	vars	100	64.003	ENSCGRG00001005686	Vars	100	64.319	Cricetulus_griseus_chok1gshd
ENSSDUG00000014177	vars	93	62.264	ENSCGRG00000013352	Vars	78	62.602	Cricetulus_griseus_crigri
ENSSDUG00000014177	vars	100	84.285	ENSCSEG00000019652	vars	100	84.285	Cynoglossus_semilaevis
ENSSDUG00000014177	vars	100	91.393	ENSCVAG00000022398	vars	100	91.315	Cyprinodon_variegatus
ENSSDUG00000014177	vars	100	85.121	ENSDARG00000044575	vars	100	85.121	Danio_rerio
ENSSDUG00000014177	vars	86	68.227	ENSDORG00000016433	Vars	94	70.711	Dipodomys_ordii
ENSSDUG00000014177	vars	68	73.960	ENSETEG00000003824	VARS	77	73.960	Echinops_telfairi
ENSSDUG00000014177	vars	57	65.937	ENSEBUG00000004637	vars	100	65.937	Eptatretus_burgeri
ENSSDUG00000014177	vars	51	73.484	ENSEBUG00000007086	vars	82	73.484	Eptatretus_burgeri
ENSSDUG00000014177	vars	100	64.856	ENSEASG00005015673	VARS	100	65.093	Equus_asinus_asinus
ENSSDUG00000014177	vars	100	64.806	ENSECAG00000014620	VARS	100	64.965	Equus_caballus
ENSSDUG00000014177	vars	72	71.429	ENSEEUG00000004116	VARS	73	71.429	Erinaceus_europaeus
ENSSDUG00000014177	vars	100	85.558	ENSELUG00000006550	vars	97	85.558	Esox_lucius
ENSSDUG00000014177	vars	100	64.779	ENSFCAG00000004510	VARS	100	64.783	Felis_catus
ENSSDUG00000014177	vars	83	69.625	ENSFDAG00000011401	VARS	100	69.261	Fukomys_damarensis
ENSSDUG00000014177	vars	100	89.358	ENSFHEG00000010672	vars	100	89.358	Fundulus_heteroclitus
ENSSDUG00000014177	vars	100	82.775	ENSGMOG00000014908	vars	100	83.009	Gadus_morhua
ENSSDUG00000014177	vars	100	90.689	ENSGAFG00000021630	vars	100	90.689	Gambusia_affinis
ENSSDUG00000014177	vars	93	91.856	ENSGACG00000009601	vars	100	87.940	Gasterosteus_aculeatus
ENSSDUG00000014177	vars	50	59.813	ENSGAGG00000006508	-	91	59.657	Gopherus_agassizii
ENSSDUG00000014177	vars	100	64.396	ENSGGOG00000011364	VARS	100	64.706	Gorilla_gorilla
ENSSDUG00000014177	vars	100	92.801	ENSHBUG00000017151	vars	97	92.801	Haplochromis_burtoni
ENSSDUG00000014177	vars	100	63.820	ENSHGLG00000011646	VARS	100	63.820	Heterocephalus_glaber_female
ENSSDUG00000014177	vars	94	60.682	ENSHGLG00100018062	VARS	99	60.357	Heterocephalus_glaber_male
ENSSDUG00000014177	vars	99	85.580	ENSHCOG00000012198	vars	99	85.580	Hippocampus_comes
ENSSDUG00000014177	vars	100	84.441	ENSIPUG00000005218	vars	100	84.519	Ictalurus_punctatus
ENSSDUG00000014177	vars	100	65.012	ENSSTOG00000013112	VARS	100	64.783	Ictidomys_tridecemlineatus
ENSSDUG00000014177	vars	100	63.777	ENSJJAG00000019749	-	100	63.538	Jaculus_jaculus
ENSSDUG00000014177	vars	100	52.259	ENSJJAG00000015343	-	100	52.147	Jaculus_jaculus
ENSSDUG00000014177	vars	100	87.862	ENSKMAG00000009455	vars	100	87.862	Kryptolebias_marmoratus
ENSSDUG00000014177	vars	100	88.406	ENSLBEG00000010341	vars	99	88.406	Labrus_bergylta
ENSSDUG00000014177	vars	94	66.694	ENSLACG00000015232	VARS	99	66.831	Latimeria_chalumnae
ENSSDUG00000014177	vars	100	75.117	ENSLOCG00000004240	vars	100	75.274	Lepisosteus_oculatus
ENSSDUG00000014177	vars	100	64.053	ENSLAFG00000023090	VARS	100	63.975	Loxodonta_africana
ENSSDUG00000014177	vars	100	64.319	ENSMFAG00000001032	VARS	100	64.551	Macaca_fascicularis
ENSSDUG00000014177	vars	100	64.319	ENSMMUG00000006828	VARS	100	64.551	Macaca_mulatta
ENSSDUG00000014177	vars	100	64.319	ENSMNEG00000042072	VARS	100	64.551	Macaca_nemestrina
ENSSDUG00000014177	vars	100	64.396	ENSMLEG00000039307	VARS	100	64.628	Mandrillus_leucophaeus
ENSSDUG00000014177	vars	100	92.169	ENSMAMG00000003949	vars	100	92.169	Mastacembelus_armatus
ENSSDUG00000014177	vars	100	92.723	ENSMZEG00005018327	vars	97	92.723	Maylandia_zebra
ENSSDUG00000014177	vars	100	63.926	ENSMAUG00000006715	Vars	100	64.241	Mesocricetus_auratus
ENSSDUG00000014177	vars	100	64.391	ENSMICG00000003548	VARS	100	64.241	Microcebus_murinus
ENSSDUG00000014177	vars	100	63.256	ENSMOCG00000015404	Vars	100	63.447	Microtus_ochrogaster
ENSSDUG00000014177	vars	100	88.019	ENSMMOG00000015801	vars	100	88.019	Mola_mola
ENSSDUG00000014177	vars	100	64.783	ENSMODG00000015204	-	100	64.706	Monodelphis_domestica
ENSSDUG00000014177	vars	99	92.868	ENSMALG00000022532	vars	99	92.868	Monopterus_albus
ENSSDUG00000014177	vars	100	64.752	MGP_CAROLIEiJ_G0021491	Vars	100	64.861	Mus_caroli
ENSSDUG00000014177	vars	100	64.596	ENSMUSG00000007029	Vars	100	64.706	Mus_musculus
ENSSDUG00000014177	vars	100	64.596	MGP_PahariEiJ_G0020486	Vars	100	64.596	Mus_pahari
ENSSDUG00000014177	vars	100	64.674	MGP_SPRETEiJ_G0022396	Vars	100	64.783	Mus_spretus
ENSSDUG00000014177	vars	100	64.469	ENSMPUG00000010821	VARS	100	64.529	Mustela_putorius_furo
ENSSDUG00000014177	vars	78	66.997	ENSMLUG00000013126	VARS	100	66.996	Myotis_lucifugus
ENSSDUG00000014177	vars	100	64.363	ENSNGAG00000012151	Vars	100	64.297	Nannospalax_galili
ENSSDUG00000014177	vars	100	92.567	ENSNBRG00000020520	vars	100	92.567	Neolamprologus_brichardi
ENSSDUG00000014177	vars	100	64.391	ENSNLEG00000006351	VARS	100	64.628	Nomascus_leucogenys
ENSSDUG00000014177	vars	94	72.445	ENSMEUG00000011378	VARS	100	63.121	Notamacropus_eugenii
ENSSDUG00000014177	vars	100	64.313	ENSOPRG00000003607	VARS	100	64.628	Ochotona_princeps
ENSSDUG00000014177	vars	100	63.509	ENSODEG00000017681	VARS	100	63.432	Octodon_degus
ENSSDUG00000014177	vars	100	91.589	ENSONIG00000013064	vars	100	93.826	Oreochromis_niloticus
ENSSDUG00000014177	vars	77	67.213	ENSOANG00000005400	VARS	98	66.979	Ornithorhynchus_anatinus
ENSSDUG00000014177	vars	100	63.276	ENSOCUG00000022463	VARS	100	63.012	Oryctolagus_cuniculus
ENSSDUG00000014177	vars	100	89.720	ENSORLG00000013063	vars	100	89.798	Oryzias_latipes
ENSSDUG00000014177	vars	100	90.297	ENSORLG00020003504	vars	100	90.297	Oryzias_latipes_hni
ENSSDUG00000014177	vars	100	90.603	ENSORLG00015009001	vars	100	90.603	Oryzias_latipes_hsok
ENSSDUG00000014177	vars	100	90.760	ENSOMEG00000015016	vars	100	90.760	Oryzias_melastigma
ENSSDUG00000014177	vars	100	64.120	ENSOGAG00000007515	VARS	100	63.874	Otolemur_garnettii
ENSSDUG00000014177	vars	50	63.707	ENSOARG00000004625	-	91	63.566	Ovis_aries
ENSSDUG00000014177	vars	100	64.236	ENSPPAG00000034012	VARS	100	64.474	Pan_paniscus
ENSSDUG00000014177	vars	100	64.934	ENSPPRG00000014855	VARS	100	64.938	Panthera_pardus
ENSSDUG00000014177	vars	85	68.984	ENSPTIG00000010462	VARS	94	68.374	Panthera_tigris_altaica
ENSSDUG00000014177	vars	100	64.158	ENSPTRG00000017985	VARS	100	64.396	Pan_troglodytes
ENSSDUG00000014177	vars	100	62.846	ENSPANG00000014565	VARS	100	63.077	Papio_anubis
ENSSDUG00000014177	vars	100	82.087	ENSPKIG00000016304	vars	100	82.087	Paramormyrops_kingsleyae
ENSSDUG00000014177	vars	100	85.356	ENSPMGG00000023909	vars	100	85.356	Periophthalmus_magnuspinnatus
ENSSDUG00000014177	vars	100	64.081	ENSPEMG00000006639	Vars	100	64.396	Peromyscus_maniculatus_bairdii
ENSSDUG00000014177	vars	100	64.474	ENSPCIG00000018553	VARS	100	64.628	Phascolarctos_cinereus
ENSSDUG00000014177	vars	100	90.689	ENSPFOG00000015690	vars	100	90.454	Poecilia_formosa
ENSSDUG00000014177	vars	100	90.532	ENSPLAG00000009590	vars	100	90.297	Poecilia_latipinna
ENSSDUG00000014177	vars	100	90.610	ENSPMEG00000004708	vars	100	90.376	Poecilia_mexicana
ENSSDUG00000014177	vars	100	86.072	ENSPREG00000013264	vars	100	86.072	Poecilia_reticulata
ENSSDUG00000014177	vars	100	62.839	ENSPPYG00000016460	VARS	100	62.751	Pongo_abelii
ENSSDUG00000014177	vars	86	66.252	ENSPCAG00000013565	VARS	86	66.252	Procavia_capensis
ENSSDUG00000014177	vars	100	64.264	ENSPCOG00000010942	VARS	100	64.424	Propithecus_coquereli
ENSSDUG00000014177	vars	100	62.277	ENSPVAG00000012403	VARS	100	62.307	Pteropus_vampyrus
ENSSDUG00000014177	vars	100	92.879	ENSPNYG00000022511	vars	100	92.879	Pundamilia_nyererei
ENSSDUG00000014177	vars	100	84.934	ENSPNAG00000020962	vars	100	85.012	Pygocentrus_nattereri
ENSSDUG00000014177	vars	100	64.236	ENSRNOG00000000867	Vars	100	64.142	Rattus_norvegicus
ENSSDUG00000014177	vars	100	64.319	ENSRBIG00000041669	VARS	100	64.628	Rhinopithecus_bieti
ENSSDUG00000014177	vars	100	64.319	ENSRROG00000045490	VARS	100	64.628	Rhinopithecus_roxellana
ENSSDUG00000014177	vars	100	64.003	ENSSBOG00000035402	VARS	100	64.241	Saimiri_boliviensis_boliviensis
ENSSDUG00000014177	vars	100	63.333	ENSSHAG00000006937	VARS	100	64.089	Sarcophilus_harrisii
ENSSDUG00000014177	vars	100	81.138	ENSSFOG00015014272	vars	100	81.138	Scleropages_formosus
ENSSDUG00000014177	vars	100	92.169	ENSSMAG00000009596	vars	99	92.169	Scophthalmus_maximus
ENSSDUG00000014177	vars	100	98.512	ENSSLDG00000025316	vars	100	98.512	Seriola_lalandi_dorsalis
ENSSDUG00000014177	vars	100	92.952	ENSSPAG00000017068	vars	100	92.796	Stegastes_partitus
ENSSDUG00000014177	vars	100	63.798	ENSSSCG00000038950	VARS	100	63.960	Sus_scrofa
ENSSDUG00000014177	vars	82	82.286	ENSTRUG00000012307	vars	98	82.163	Takifugu_rubripes
ENSSDUG00000014177	vars	100	87.256	ENSTNIG00000008011	vars	100	87.177	Tetraodon_nigroviridis
ENSSDUG00000014177	vars	100	58.463	ENSTTRG00000014128	VARS	100	58.463	Tursiops_truncatus
ENSSDUG00000014177	vars	100	62.848	ENSUAMG00000010424	VARS	100	62.888	Ursus_americanus
ENSSDUG00000014177	vars	100	59.179	ENSUMAG00000013486	VARS	100	59.487	Ursus_maritimus
ENSSDUG00000014177	vars	100	64.601	ENSVVUG00000021323	VARS	100	64.269	Vulpes_vulpes
ENSSDUG00000014177	vars	100	64.109	ENSXETG00000024076	vars	100	63.938	Xenopus_tropicalis
ENSSDUG00000014177	vars	100	88.185	ENSXCOG00000019172	vars	100	88.106	Xiphophorus_couchianus
ENSSDUG00000014177	vars	100	90.767	ENSXMAG00000010927	vars	100	90.532	Xiphophorus_maculatus