EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000014495 (Gene tree)
Gene ID: 111232652
Gene Symbol: clp1
Alias: fa28a12|wu:fa28a12
Full Name: cleavage and polyadenylation factor I subunit 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 6140 bases
Position: chrBDQW01000331.1:896585-902724
Accession: 111232652
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000019930	Clp1	PF06807.14	2.7e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000020281	-	3409	XM_022760265	ENSSDUP00000019930	441 (aa)	XP_022615986	UPI000BBF202F

Gene Model

Click here to download ENSSDUG00000014495's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000014495's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000014495	clp1	99	76.322	ENSG00000172409	CLP1	98	77.830	Homo_sapiens
ENSSDUG00000014495	clp1	100	97.506	ENSAPOG00000008242	clp1	100	97.506	Acanthochromis_polyacanthus
ENSSDUG00000014495	clp1	99	76.092	ENSAMEG00000014551	CLP1	99	76.092	Ailuropoda_melanoleuca
ENSSDUG00000014495	clp1	100	97.279	ENSACIG00000006310	clp1	99	97.279	Amphilophus_citrinellus
ENSSDUG00000014495	clp1	100	97.959	ENSAOCG00000010681	clp1	100	97.959	Amphiprion_ocellaris
ENSSDUG00000014495	clp1	100	97.959	ENSAPEG00000012165	clp1	100	97.959	Amphiprion_percula
ENSSDUG00000014495	clp1	100	98.413	ENSATEG00000012374	clp1	100	98.413	Anabas_testudineus
ENSSDUG00000014495	clp1	98	75.926	ENSACAG00000007139	CLP1	99	75.926	Anolis_carolinensis
ENSSDUG00000014495	clp1	99	76.322	ENSANAG00000034935	CLP1	98	77.830	Aotus_nancymaae
ENSSDUG00000014495	clp1	100	97.052	ENSACLG00000013573	clp1	100	97.052	Astatotilapia_calliptera
ENSSDUG00000014495	clp1	95	88.208	ENSAMXG00000014194	clp1	98	88.208	Astyanax_mexicanus
ENSSDUG00000014495	clp1	96	77.358	ENSBTAG00000006493	CLP1	98	77.358	Bos_taurus
ENSSDUG00000014495	clp1	95	47.754	WBGene00010304	clpf-1	97	47.754	Caenorhabditis_elegans
ENSSDUG00000014495	clp1	99	76.322	ENSCJAG00000008748	CLP1	98	77.830	Callithrix_jacchus
ENSSDUG00000014495	clp1	96	77.358	ENSCAFG00000007815	CLP1	98	77.358	Canis_familiaris
ENSSDUG00000014495	clp1	96	77.358	ENSCAFG00020000903	CLP1	98	77.358	Canis_lupus_dingo
ENSSDUG00000014495	clp1	99	76.092	ENSCHIG00000023497	CLP1	99	76.092	Capra_hircus
ENSSDUG00000014495	clp1	99	76.322	ENSTSYG00000006824	CLP1	99	76.322	Carlito_syrichta
ENSSDUG00000014495	clp1	99	76.092	ENSCAPG00000009703	CLP1	99	76.092	Cavia_aperea
ENSSDUG00000014495	clp1	96	77.594	ENSCPOG00000012554	CLP1	99	77.594	Cavia_porcellus
ENSSDUG00000014495	clp1	99	76.322	ENSCCAG00000031957	CLP1	99	76.322	Cebus_capucinus
ENSSDUG00000014495	clp1	100	75.283	ENSCATG00000044628	CLP1	98	77.830	Cercocebus_atys
ENSSDUG00000014495	clp1	96	77.594	ENSCLAG00000004094	CLP1	98	77.594	Chinchilla_lanigera
ENSSDUG00000014495	clp1	96	77.830	ENSCSAG00000005994	CLP1	98	77.830	Chlorocebus_sabaeus
ENSSDUG00000014495	clp1	98	75.694	ENSCPBG00000016843	CLP1	99	75.694	Chrysemys_picta_bellii
ENSSDUG00000014495	clp1	96	61.939	ENSCING00000003779	-	97	61.939	Ciona_intestinalis
ENSSDUG00000014495	clp1	95	63.158	ENSCSAVG00000003437	-	96	63.158	Ciona_savignyi
ENSSDUG00000014495	clp1	99	76.322	ENSCANG00000034335	CLP1	98	77.830	Colobus_angolensis_palliatus
ENSSDUG00000014495	clp1	98	76.157	ENSCGRG00001002227	CLP1	99	76.157	Cricetulus_griseus_chok1gshd
ENSSDUG00000014495	clp1	98	76.157	ENSCGRG00000004328	CLP1	99	76.157	Cricetulus_griseus_crigri
ENSSDUG00000014495	clp1	100	93.878	ENSCSEG00000008614	clp1	100	93.878	Cynoglossus_semilaevis
ENSSDUG00000014495	clp1	100	95.238	ENSCVAG00000020101	clp1	100	95.238	Cyprinodon_variegatus
ENSSDUG00000014495	clp1	100	84.305	ENSDARG00000063663	clp1	100	84.753	Danio_rerio
ENSSDUG00000014495	clp1	98	75.982	ENSDNOG00000042415	CLP1	90	75.982	Dasypus_novemcinctus
ENSSDUG00000014495	clp1	96	77.358	ENSDORG00000014685	Clp1	98	77.358	Dipodomys_ordii
ENSSDUG00000014495	clp1	95	54.785	FBgn0033842	cbc	97	54.785	Drosophila_melanogaster
ENSSDUG00000014495	clp1	96	77.594	ENSETEG00000003009	CLP1	98	77.594	Echinops_telfairi
ENSSDUG00000014495	clp1	97	65.574	ENSEBUG00000011648	clp1	99	65.574	Eptatretus_burgeri
ENSSDUG00000014495	clp1	99	76.552	ENSEASG00005002093	CLP1	99	76.552	Equus_asinus_asinus
ENSSDUG00000014495	clp1	99	76.552	ENSECAG00000011597	CLP1	99	76.552	Equus_caballus
ENSSDUG00000014495	clp1	96	77.123	ENSEEUG00000012771	CLP1	98	77.123	Erinaceus_europaeus
ENSSDUG00000014495	clp1	100	86.996	ENSELUG00000024048	clp1	100	86.996	Esox_lucius
ENSSDUG00000014495	clp1	99	76.092	ENSFCAG00000006633	CLP1	99	76.092	Felis_catus
ENSSDUG00000014495	clp1	96	77.123	ENSFALG00000011145	CLP1	98	77.123	Ficedula_albicollis
ENSSDUG00000014495	clp1	96	77.594	ENSFDAG00000000234	CLP1	98	77.594	Fukomys_damarensis
ENSSDUG00000014495	clp1	100	95.465	ENSFHEG00000014760	CLP1	100	95.465	Fundulus_heteroclitus
ENSSDUG00000014495	clp1	100	90.476	ENSGMOG00000019340	clp1	100	90.476	Gadus_morhua
ENSSDUG00000014495	clp1	96	76.887	ENSGALG00000007370	CLP1	98	76.887	Gallus_gallus
ENSSDUG00000014495	clp1	100	94.331	ENSGAFG00000003020	clp1	100	94.331	Gambusia_affinis
ENSSDUG00000014495	clp1	100	97.052	ENSGACG00000017832	clp1	100	97.052	Gasterosteus_aculeatus
ENSSDUG00000014495	clp1	98	75.694	ENSGAGG00000013279	CLP1	99	75.694	Gopherus_agassizii
ENSSDUG00000014495	clp1	99	76.322	ENSGGOG00000023006	CLP1	98	77.830	Gorilla_gorilla
ENSSDUG00000014495	clp1	100	97.279	ENSHBUG00000010436	clp1	100	97.279	Haplochromis_burtoni
ENSSDUG00000014495	clp1	96	77.594	ENSHGLG00000009914	CLP1	98	77.594	Heterocephalus_glaber_female
ENSSDUG00000014495	clp1	96	77.594	ENSHGLG00100006105	CLP1	98	77.594	Heterocephalus_glaber_male
ENSSDUG00000014495	clp1	100	95.918	ENSHCOG00000010072	clp1	100	95.918	Hippocampus_comes
ENSSDUG00000014495	clp1	100	84.410	ENSIPUG00000016238	clp1	99	84.410	Ictalurus_punctatus
ENSSDUG00000014495	clp1	96	77.594	ENSSTOG00000029257	CLP1	98	77.594	Ictidomys_tridecemlineatus
ENSSDUG00000014495	clp1	96	77.123	ENSJJAG00000023691	Clp1	98	77.123	Jaculus_jaculus
ENSSDUG00000014495	clp1	100	94.785	ENSKMAG00000011990	clp1	100	94.785	Kryptolebias_marmoratus
ENSSDUG00000014495	clp1	100	97.506	ENSLBEG00000010201	clp1	100	97.506	Labrus_bergylta
ENSSDUG00000014495	clp1	97	75.587	ENSLACG00000003160	CLP1	99	75.587	Latimeria_chalumnae
ENSSDUG00000014495	clp1	71	87.267	ENSLOCG00000008074	clp1	100	87.654	Lepisosteus_oculatus
ENSSDUG00000014495	clp1	96	77.358	ENSLAFG00000014907	CLP1	98	77.358	Loxodonta_africana
ENSSDUG00000014495	clp1	99	76.322	ENSMFAG00000046074	CLP1	98	77.830	Macaca_fascicularis
ENSSDUG00000014495	clp1	99	76.322	ENSMMUG00000038007	CLP1	99	76.322	Macaca_mulatta
ENSSDUG00000014495	clp1	96	77.830	ENSMNEG00000000259	CLP1	98	77.830	Macaca_nemestrina
ENSSDUG00000014495	clp1	99	76.322	ENSMLEG00000043556	CLP1	98	77.830	Mandrillus_leucophaeus
ENSSDUG00000014495	clp1	100	97.732	ENSMAMG00000002149	clp1	100	97.732	Mastacembelus_armatus
ENSSDUG00000014495	clp1	100	97.052	ENSMZEG00005002850	clp1	100	97.052	Maylandia_zebra
ENSSDUG00000014495	clp1	96	76.887	ENSMGAG00000009643	CLP1	98	76.887	Meleagris_gallopavo
ENSSDUG00000014495	clp1	98	75.694	ENSMAUG00000016261	Clp1	99	75.694	Mesocricetus_auratus
ENSSDUG00000014495	clp1	99	75.626	ENSMICG00000004895	CLP1	98	77.358	Microcebus_murinus
ENSSDUG00000014495	clp1	98	76.389	ENSMOCG00000005498	Clp1	99	76.389	Microtus_ochrogaster
ENSSDUG00000014495	clp1	100	95.238	ENSMMOG00000003229	clp1	100	95.238	Mola_mola
ENSSDUG00000014495	clp1	99	76.322	ENSMODG00000020107	-	99	76.322	Monodelphis_domestica
ENSSDUG00000014495	clp1	99	76.322	ENSMODG00000024148	-	99	76.322	Monodelphis_domestica
ENSSDUG00000014495	clp1	100	96.599	ENSMALG00000014239	clp1	100	96.599	Monopterus_albus
ENSSDUG00000014495	clp1	98	76.157	MGP_CAROLIEiJ_G0023726	Clp1	99	76.157	Mus_caroli
ENSSDUG00000014495	clp1	98	76.157	ENSMUSG00000027079	Clp1	99	76.157	Mus_musculus
ENSSDUG00000014495	clp1	98	75.926	MGP_PahariEiJ_G0025177	Clp1	99	75.926	Mus_pahari
ENSSDUG00000014495	clp1	98	76.157	MGP_SPRETEiJ_G0024646	Clp1	99	76.157	Mus_spretus
ENSSDUG00000014495	clp1	96	77.358	ENSMPUG00000000268	CLP1	98	77.358	Mustela_putorius_furo
ENSSDUG00000014495	clp1	99	76.552	ENSMLUG00000007904	CLP1	99	76.552	Myotis_lucifugus
ENSSDUG00000014495	clp1	96	77.123	ENSNGAG00000006165	Clp1	98	77.123	Nannospalax_galili
ENSSDUG00000014495	clp1	100	96.599	ENSNBRG00000005225	clp1	100	96.599	Neolamprologus_brichardi
ENSSDUG00000014495	clp1	78	73.333	ENSNLEG00000012809	-	97	73.333	Nomascus_leucogenys
ENSSDUG00000014495	clp1	98	76.267	ENSMEUG00000010949	CLP1	100	76.267	Notamacropus_eugenii
ENSSDUG00000014495	clp1	69	78.548	ENSOPRG00000007329	CLP1	100	78.548	Ochotona_princeps
ENSSDUG00000014495	clp1	96	77.594	ENSODEG00000011410	CLP1	98	77.594	Octodon_degus
ENSSDUG00000014495	clp1	100	96.599	ENSONIG00000005089	clp1	100	96.599	Oreochromis_niloticus
ENSSDUG00000014495	clp1	99	76.322	ENSOCUG00000007045	CLP1	99	76.322	Oryctolagus_cuniculus
ENSSDUG00000014495	clp1	100	94.331	ENSORLG00000003647	clp1	100	94.331	Oryzias_latipes
ENSSDUG00000014495	clp1	100	94.104	ENSORLG00020016676	clp1	100	94.104	Oryzias_latipes_hni
ENSSDUG00000014495	clp1	100	94.331	ENSORLG00015019484	clp1	100	94.331	Oryzias_latipes_hsok
ENSSDUG00000014495	clp1	100	94.558	ENSOMEG00000021303	clp1	100	94.558	Oryzias_melastigma
ENSSDUG00000014495	clp1	99	76.092	ENSOGAG00000004508	CLP1	99	76.092	Otolemur_garnettii
ENSSDUG00000014495	clp1	98	75.115	ENSOARG00000010145	CLP1	99	75.115	Ovis_aries
ENSSDUG00000014495	clp1	99	76.322	ENSPPAG00000041519	CLP1	98	77.830	Pan_paniscus
ENSSDUG00000014495	clp1	99	76.092	ENSPPRG00000006135	CLP1	99	76.092	Panthera_pardus
ENSSDUG00000014495	clp1	99	76.092	ENSPTIG00000015866	CLP1	99	76.092	Panthera_tigris_altaica
ENSSDUG00000014495	clp1	96	77.830	ENSPTRG00000047318	CLP1	98	77.830	Pan_troglodytes
ENSSDUG00000014495	clp1	99	76.322	ENSPANG00000017078	CLP1	98	76.322	Papio_anubis
ENSSDUG00000014495	clp1	100	86.517	ENSPKIG00000007697	clp1	100	86.517	Paramormyrops_kingsleyae
ENSSDUG00000014495	clp1	93	73.105	ENSPSIG00000005468	CLP1	99	73.105	Pelodiscus_sinensis
ENSSDUG00000014495	clp1	100	93.424	ENSPMGG00000012171	clp1	100	93.424	Periophthalmus_magnuspinnatus
ENSSDUG00000014495	clp1	98	76.389	ENSPEMG00000011213	-	99	76.389	Peromyscus_maniculatus_bairdii
ENSSDUG00000014495	clp1	95	68.646	ENSPMAG00000006707	clp1	97	68.646	Petromyzon_marinus
ENSSDUG00000014495	clp1	99	76.552	ENSPCIG00000011899	CLP1	99	76.552	Phascolarctos_cinereus
ENSSDUG00000014495	clp1	100	94.785	ENSPFOG00000008169	clp1	100	94.785	Poecilia_formosa
ENSSDUG00000014495	clp1	100	94.785	ENSPLAG00000022388	clp1	100	94.785	Poecilia_latipinna
ENSSDUG00000014495	clp1	100	94.785	ENSPMEG00000021088	clp1	100	94.785	Poecilia_mexicana
ENSSDUG00000014495	clp1	100	94.785	ENSPREG00000017802	clp1	100	94.785	Poecilia_reticulata
ENSSDUG00000014495	clp1	52	75.546	ENSPPYG00000003266	-	100	75.546	Pongo_abelii
ENSSDUG00000014495	clp1	99	76.092	ENSPCOG00000000360	CLP1	99	76.092	Propithecus_coquereli
ENSSDUG00000014495	clp1	96	77.358	ENSPVAG00000016270	CLP1	98	77.358	Pteropus_vampyrus
ENSSDUG00000014495	clp1	100	97.279	ENSPNYG00000017274	clp1	99	97.279	Pundamilia_nyererei
ENSSDUG00000014495	clp1	100	85.938	ENSPNAG00000026460	clp1	100	86.830	Pygocentrus_nattereri
ENSSDUG00000014495	clp1	98	76.157	ENSRNOG00000007416	Clp1	99	76.157	Rattus_norvegicus
ENSSDUG00000014495	clp1	96	77.830	ENSRBIG00000018191	CLP1	98	77.830	Rhinopithecus_bieti
ENSSDUG00000014495	clp1	99	76.322	ENSRROG00000039265	CLP1	98	77.830	Rhinopithecus_roxellana
ENSSDUG00000014495	clp1	96	77.830	ENSSBOG00000032517	-	98	77.830	Saimiri_boliviensis_boliviensis
ENSSDUG00000014495	clp1	94	63.043	ENSSBOG00000010558	-	93	63.043	Saimiri_boliviensis_boliviensis
ENSSDUG00000014495	clp1	95	78.147	ENSSHAG00000015695	CLP1	97	78.147	Sarcophilus_harrisii
ENSSDUG00000014495	clp1	100	85.651	ENSSFOG00015000628	clp1	100	86.093	Scleropages_formosus
ENSSDUG00000014495	clp1	100	97.279	ENSSMAG00000019423	clp1	99	97.279	Scophthalmus_maximus
ENSSDUG00000014495	clp1	100	99.773	ENSSLDG00000000937	clp1	100	99.773	Seriola_lalandi_dorsalis
ENSSDUG00000014495	clp1	52	75.439	ENSSARG00000002459	CLP1	100	75.439	Sorex_araneus
ENSSDUG00000014495	clp1	98	75.000	ENSSPUG00000016811	CLP1	99	75.000	Sphenodon_punctatus
ENSSDUG00000014495	clp1	100	98.186	ENSSPAG00000016052	clp1	100	98.186	Stegastes_partitus
ENSSDUG00000014495	clp1	96	77.358	ENSSSCG00000031442	CLP1	98	77.358	Sus_scrofa
ENSSDUG00000014495	clp1	96	76.887	ENSTGUG00000007002	CLP1	98	76.887	Taeniopygia_guttata
ENSSDUG00000014495	clp1	100	92.290	ENSTRUG00000012602	clp1	100	92.290	Takifugu_rubripes
ENSSDUG00000014495	clp1	100	91.610	ENSTNIG00000013125	clp1	100	91.610	Tetraodon_nigroviridis
ENSSDUG00000014495	clp1	95	77.381	ENSTBEG00000009975	CLP1	97	77.381	Tupaia_belangeri
ENSSDUG00000014495	clp1	96	77.358	ENSTTRG00000002096	CLP1	98	77.358	Tursiops_truncatus
ENSSDUG00000014495	clp1	96	77.358	ENSUAMG00000011388	CLP1	98	77.358	Ursus_americanus
ENSSDUG00000014495	clp1	96	77.358	ENSUMAG00000018317	CLP1	98	77.358	Ursus_maritimus
ENSSDUG00000014495	clp1	100	75.283	ENSVVUG00000017138	CLP1	99	75.283	Vulpes_vulpes
ENSSDUG00000014495	clp1	98	71.267	ENSXETG00000007088	clp1	99	71.493	Xenopus_tropicalis
ENSSDUG00000014495	clp1	100	94.558	ENSXCOG00000002287	clp1	100	94.558	Xiphophorus_couchianus
ENSSDUG00000014495	clp1	100	94.558	ENSXMAG00000009783	clp1	100	94.558	Xiphophorus_maculatus