EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000014555 (Gene tree)
Gene ID: 111216593
Gene Symbol: parn
Alias: zgc:56067
Full Name: poly(A)-specific ribonuclease
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 10818 bases
Position: chrBDQW01000035.1:1218113-1228930
Accession: 111216593
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000019998	RNA_bind	PF08675.11	1.6e-33	1	1
ENSSDUP00000019998	CAF1	PF04857.20	8e-91	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000020351	-	3946	XM_022738158	ENSSDUP00000019998	686 (aa)	XP_022593879	UPI000BBEB60C

Gene Model

Click here to download ENSSDUG00000014555's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000014555's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000014555	parn	83	73.549	ENSG00000140694	PARN	99	70.732	Homo_sapiens
ENSSDUG00000014555	parn	80	75.495	ENSAMEG00000011208	PARN	86	75.495	Ailuropoda_melanoleuca
ENSSDUG00000014555	parn	87	83.619	ENSACIG00000000619	parn	99	83.463	Amphilophus_citrinellus
ENSSDUG00000014555	parn	100	90.304	ENSAOCG00000003465	parn	100	89.870	Amphiprion_ocellaris
ENSSDUG00000014555	parn	72	94.726	ENSAPEG00000010661	parn	94	93.915	Amphiprion_percula
ENSSDUG00000014555	parn	100	91.849	ENSATEG00000004661	parn	100	91.849	Anabas_testudineus
ENSSDUG00000014555	parn	82	72.633	ENSAPLG00000013914	PARN	90	73.150	Anas_platyrhynchos
ENSSDUG00000014555	parn	83	74.363	ENSACAG00000004973	PARN	99	69.419	Anolis_carolinensis
ENSSDUG00000014555	parn	83	73.549	ENSANAG00000031516	PARN	94	76.271	Aotus_nancymaae
ENSSDUG00000014555	parn	100	89.811	ENSACLG00000004742	parn	100	90.102	Astatotilapia_calliptera
ENSSDUG00000014555	parn	100	72.832	ENSAMXG00000012390	parn	100	72.688	Astyanax_mexicanus
ENSSDUG00000014555	parn	83	69.901	ENSBTAG00000018097	PARN	89	72.467	Bos_taurus
ENSSDUG00000014555	parn	83	73.720	ENSCJAG00000015866	PARN	94	76.271	Callithrix_jacchus
ENSSDUG00000014555	parn	80	75.271	ENSCAFG00000018795	PARN	86	75.271	Canis_familiaris
ENSSDUG00000014555	parn	80	75.632	ENSCAFG00020024126	PARN	86	75.632	Canis_lupus_dingo
ENSSDUG00000014555	parn	83	72.603	ENSCHIG00000018143	PARN	90	72.603	Capra_hircus
ENSSDUG00000014555	parn	68	50.312	ENSCAPG00000007984	PARN	78	50.312	Cavia_aperea
ENSSDUG00000014555	parn	84	72.081	ENSCPOG00000002263	PARN	91	72.081	Cavia_porcellus
ENSSDUG00000014555	parn	83	73.720	ENSCCAG00000030367	PARN	94	76.271	Cebus_capucinus
ENSSDUG00000014555	parn	78	77.881	ENSCATG00000041368	PARN	95	77.881	Cercocebus_atys
ENSSDUG00000014555	parn	50	31.034	ENSCATG00000033196	PNLDC1	72	31.034	Cercocebus_atys
ENSSDUG00000014555	parn	84	72.727	ENSCLAG00000015406	PARN	91	72.727	Chinchilla_lanigera
ENSSDUG00000014555	parn	83	73.720	ENSCSAG00000008142	PARN	95	71.452	Chlorocebus_sabaeus
ENSSDUG00000014555	parn	82	57.168	ENSCHOG00000007014	PARN	99	53.727	Choloepus_hoffmanni
ENSSDUG00000014555	parn	74	74.237	ENSCPBG00000006609	PARN	89	74.237	Chrysemys_picta_bellii
ENSSDUG00000014555	parn	74	42.214	ENSCING00000010142	-	99	42.214	Ciona_intestinalis
ENSSDUG00000014555	parn	83	62.771	ENSCANG00000028849	-	93	76.271	Colobus_angolensis_palliatus
ENSSDUG00000014555	parn	83	73.310	ENSCGRG00001012096	Parn	90	72.964	Cricetulus_griseus_chok1gshd
ENSSDUG00000014555	parn	83	73.310	ENSCGRG00000004939	Parn	90	72.964	Cricetulus_griseus_crigri
ENSSDUG00000014555	parn	100	86.938	ENSCSEG00000002064	parn	100	86.502	Cynoglossus_semilaevis
ENSSDUG00000014555	parn	100	85.277	ENSCVAG00000014848	parn	100	84.840	Cyprinodon_variegatus
ENSSDUG00000014555	parn	100	67.677	ENSDARG00000102634	parn	100	67.532	Danio_rerio
ENSSDUG00000014555	parn	83	72.945	ENSDNOG00000000833	PARN	96	75.632	Dasypus_novemcinctus
ENSSDUG00000014555	parn	61	74.621	ENSETEG00000014828	-	69	74.621	Echinops_telfairi
ENSSDUG00000014555	parn	83	72.945	ENSEASG00005011400	PARN	90	72.603	Equus_asinus_asinus
ENSSDUG00000014555	parn	83	72.774	ENSECAG00000017792	PARN	90	72.432	Equus_caballus
ENSSDUG00000014555	parn	65	77.778	ENSEEUG00000010370	PARN	73	77.778	Erinaceus_europaeus
ENSSDUG00000014555	parn	100	76.012	ENSELUG00000013139	parn	90	76.734	Esox_lucius
ENSSDUG00000014555	parn	80	75.812	ENSFCAG00000044961	PARN	86	75.812	Felis_catus
ENSSDUG00000014555	parn	82	72.837	ENSFALG00000003911	PARN	89	73.356	Ficedula_albicollis
ENSSDUG00000014555	parn	82	73.529	ENSFDAG00000009234	PARN	90	73.529	Fukomys_damarensis
ENSSDUG00000014555	parn	87	81.271	ENSFHEG00000013738	parn	92	89.831	Fundulus_heteroclitus
ENSSDUG00000014555	parn	80	85.844	ENSGMOG00000003231	parn	99	85.662	Gadus_morhua
ENSSDUG00000014555	parn	89	69.085	ENSGALG00000003091	PARN	99	69.401	Gallus_gallus
ENSSDUG00000014555	parn	100	85.174	ENSGAFG00000011061	parn	100	84.593	Gambusia_affinis
ENSSDUG00000014555	parn	100	77.954	ENSGACG00000019501	parn	100	77.666	Gasterosteus_aculeatus
ENSSDUG00000014555	parn	83	73.549	ENSGGOG00000025224	PARN	91	76.271	Gorilla_gorilla
ENSSDUG00000014555	parn	100	90.684	ENSHBUG00000017906	parn	100	90.975	Haplochromis_burtoni
ENSSDUG00000014555	parn	84	71.959	ENSHGLG00000010886	PARN	91	71.959	Heterocephalus_glaber_female
ENSSDUG00000014555	parn	84	71.959	ENSHGLG00100014659	PARN	91	71.959	Heterocephalus_glaber_male
ENSSDUG00000014555	parn	80	83.577	ENSHCOG00000008683	parn	94	83.212	Hippocampus_comes
ENSSDUG00000014555	parn	100	61.850	ENSIPUG00000012401	parn	100	61.905	Ictalurus_punctatus
ENSSDUG00000014555	parn	83	72.279	ENSSTOG00000007519	PARN	92	72.279	Ictidomys_tridecemlineatus
ENSSDUG00000014555	parn	83	73.484	ENSJJAG00000023049	Parn	91	73.484	Jaculus_jaculus
ENSSDUG00000014555	parn	100	86.900	ENSKMAG00000009462	parn	100	86.463	Kryptolebias_marmoratus
ENSSDUG00000014555	parn	93	90.297	ENSLBEG00000009167	parn	100	89.984	Labrus_bergylta
ENSSDUG00000014555	parn	73	75.198	ENSLACG00000004207	PARN	100	74.292	Latimeria_chalumnae
ENSSDUG00000014555	parn	100	71.490	ENSLOCG00000000715	parn	100	71.490	Lepisosteus_oculatus
ENSSDUG00000014555	parn	83	73.830	ENSLAFG00000015036	PARN	90	73.830	Loxodonta_africana
ENSSDUG00000014555	parn	83	70.307	ENSMFAG00000044852	PARN	94	76.271	Macaca_fascicularis
ENSSDUG00000014555	parn	83	73.720	ENSMMUG00000018849	PARN	94	76.271	Macaca_mulatta
ENSSDUG00000014555	parn	83	73.720	ENSMNEG00000045108	PARN	94	76.271	Macaca_nemestrina
ENSSDUG00000014555	parn	83	73.549	ENSMLEG00000031743	PARN	94	76.271	Mandrillus_leucophaeus
ENSSDUG00000014555	parn	100	91.872	ENSMAMG00000006939	parn	100	91.437	Mastacembelus_armatus
ENSSDUG00000014555	parn	100	89.956	ENSMZEG00005013590	parn	100	90.247	Maylandia_zebra
ENSSDUG00000014555	parn	82	72.203	ENSMGAG00000001004	PARN	90	71.404	Meleagris_gallopavo
ENSSDUG00000014555	parn	83	67.747	ENSMAUG00000008025	Parn	90	67.747	Mesocricetus_auratus
ENSSDUG00000014555	parn	83	73.801	ENSMICG00000016053	PARN	99	68.300	Microcebus_murinus
ENSSDUG00000014555	parn	72	78.543	ENSMOCG00000022211	Parn	100	78.543	Microtus_ochrogaster
ENSSDUG00000014555	parn	81	89.369	ENSMMOG00000011333	parn	90	88.829	Mola_mola
ENSSDUG00000014555	parn	72	80.282	ENSMODG00000004915	PARN	99	80.282	Monodelphis_domestica
ENSSDUG00000014555	parn	98	90.399	ENSMALG00000019426	parn	99	90.103	Monopterus_albus
ENSSDUG00000014555	parn	82	72.743	MGP_CAROLIEiJ_G0020466	Parn	89	72.105	Mus_caroli
ENSSDUG00000014555	parn	82	72.105	ENSMUSG00000022685	Parn	100	74.390	Mus_musculus
ENSSDUG00000014555	parn	83	71.503	MGP_PahariEiJ_G0016172	Parn	91	71.503	Mus_pahari
ENSSDUG00000014555	parn	83	70.819	MGP_SPRETEiJ_G0021361	Parn	92	70.819	Mus_spretus
ENSSDUG00000014555	parn	83	73.368	ENSMPUG00000014464	PARN	95	70.598	Mustela_putorius_furo
ENSSDUG00000014555	parn	72	78.384	ENSMLUG00000005414	PARN	100	78.384	Myotis_lucifugus
ENSSDUG00000014555	parn	81	90.794	ENSNBRG00000006805	parn	93	91.155	Neolamprologus_brichardi
ENSSDUG00000014555	parn	84	73.064	ENSNLEG00000010241	PARN	91	76.271	Nomascus_leucogenys
ENSSDUG00000014555	parn	79	54.579	ENSMEUG00000008178	-	86	54.579	Notamacropus_eugenii
ENSSDUG00000014555	parn	82	68.458	ENSOPRG00000012187	PARN	90	68.458	Ochotona_princeps
ENSSDUG00000014555	parn	84	67.703	ENSODEG00000001617	PARN	91	67.703	Octodon_degus
ENSSDUG00000014555	parn	100	90.830	ENSONIG00000000151	parn	100	91.121	Oreochromis_niloticus
ENSSDUG00000014555	parn	83	73.630	ENSOCUG00000000322	PARN	99	68.487	Oryctolagus_cuniculus
ENSSDUG00000014555	parn	100	82.070	ENSORLG00020010313	parn	100	81.924	Oryzias_latipes_hni
ENSSDUG00000014555	parn	100	81.778	ENSORLG00015000300	parn	100	81.778	Oryzias_latipes_hsok
ENSSDUG00000014555	parn	100	80.932	ENSOMEG00000019555	parn	100	80.786	Oryzias_melastigma
ENSSDUG00000014555	parn	72	78.427	ENSOGAG00000014626	PARN	100	78.427	Otolemur_garnettii
ENSSDUG00000014555	parn	72	79.394	ENSOARG00000007574	PARN	100	79.394	Ovis_aries
ENSSDUG00000014555	parn	83	73.379	ENSPPAG00000031438	PARN	91	76.271	Pan_paniscus
ENSSDUG00000014555	parn	80	75.812	ENSPPRG00000018583	PARN	86	75.812	Panthera_pardus
ENSSDUG00000014555	parn	83	72.867	ENSPTIG00000012135	PARN	86	75.812	Panthera_tigris_altaica
ENSSDUG00000014555	parn	83	73.379	ENSPTRG00000007792	PARN	91	76.271	Pan_troglodytes
ENSSDUG00000014555	parn	83	71.502	ENSPANG00000020099	PARN	93	76.271	Papio_anubis
ENSSDUG00000014555	parn	99	70.270	ENSPKIG00000022807	parn	96	69.986	Paramormyrops_kingsleyae
ENSSDUG00000014555	parn	83	73.935	ENSPSIG00000014804	PARN	90	74.188	Pelodiscus_sinensis
ENSSDUG00000014555	parn	90	79.903	ENSPMGG00000014431	parn	85	79.903	Periophthalmus_magnuspinnatus
ENSSDUG00000014555	parn	83	71.007	ENSPEMG00000018439	Parn	90	71.007	Peromyscus_maniculatus_bairdii
ENSSDUG00000014555	parn	75	68.979	ENSPMAG00000003956	parn	98	69.126	Petromyzon_marinus
ENSSDUG00000014555	parn	61	71.963	ENSPCIG00000001259	PARN	91	76.271	Phascolarctos_cinereus
ENSSDUG00000014555	parn	100	85.029	ENSPFOG00000012823	parn	100	84.593	Poecilia_formosa
ENSSDUG00000014555	parn	100	85.174	ENSPLAG00000006395	parn	100	84.738	Poecilia_latipinna
ENSSDUG00000014555	parn	100	85.320	ENSPMEG00000007711	parn	100	84.884	Poecilia_mexicana
ENSSDUG00000014555	parn	100	85.320	ENSPREG00000000147	parn	100	84.884	Poecilia_reticulata
ENSSDUG00000014555	parn	83	72.959	ENSPPYG00000007123	PARN	90	72.959	Pongo_abelii
ENSSDUG00000014555	parn	78	63.884	ENSPCAG00000001741	PARN	85	66.411	Procavia_capensis
ENSSDUG00000014555	parn	83	71.233	ENSPCOG00000019292	PARN	91	74.576	Propithecus_coquereli
ENSSDUG00000014555	parn	82	70.191	ENSPVAG00000002547	PARN	99	65.367	Pteropus_vampyrus
ENSSDUG00000014555	parn	100	90.393	ENSPNYG00000006835	parn	100	90.684	Pundamilia_nyererei
ENSSDUG00000014555	parn	93	73.292	ENSPNAG00000018905	parn	100	72.826	Pygocentrus_nattereri
ENSSDUG00000014555	parn	83	73.030	ENSRNOG00000002912	Parn	96	78.571	Rattus_norvegicus
ENSSDUG00000014555	parn	83	72.014	ENSSBOG00000034726	PARN	94	76.271	Saimiri_boliviensis_boliviensis
ENSSDUG00000014555	parn	61	78.708	ENSSHAG00000008493	PARN	93	78.708	Sarcophilus_harrisii
ENSSDUG00000014555	parn	100	71.449	ENSSFOG00015014165	parn	98	75.124	Scleropages_formosus
ENSSDUG00000014555	parn	100	88.302	ENSSMAG00000000685	parn	100	88.730	Scophthalmus_maximus
ENSSDUG00000014555	parn	63	80.460	ENSSARG00000014339	PARN	75	80.460	Sorex_araneus
ENSSDUG00000014555	parn	84	73.390	ENSSPUG00000007719	PARN	92	72.483	Sphenodon_punctatus
ENSSDUG00000014555	parn	100	91.849	ENSSPAG00000007095	parn	100	91.557	Stegastes_partitus
ENSSDUG00000014555	parn	83	73.196	ENSSSCG00000007878	PARN	80	73.196	Sus_scrofa
ENSSDUG00000014555	parn	82	73.217	ENSTGUG00000004971	PARN	99	67.551	Taeniopygia_guttata
ENSSDUG00000014555	parn	83	90.334	ENSTNIG00000008252	parn	90	90.334	Tetraodon_nigroviridis
ENSSDUG00000014555	parn	74	61.977	ENSTBEG00000010407	PARN	89	61.977	Tupaia_belangeri
ENSSDUG00000014555	parn	81	69.043	ENSTTRG00000002843	PARN	77	79.055	Tursiops_truncatus
ENSSDUG00000014555	parn	63	71.167	ENSUAMG00000008283	PARN	94	67.277	Ursus_americanus
ENSSDUG00000014555	parn	80	75.812	ENSUMAG00000004527	PARN	86	75.812	Ursus_maritimus
ENSSDUG00000014555	parn	82	69.931	ENSVPAG00000008968	PARN	93	69.931	Vicugna_pacos
ENSSDUG00000014555	parn	80	75.632	ENSVVUG00000019509	PARN	86	75.632	Vulpes_vulpes
ENSSDUG00000014555	parn	83	71.331	ENSXETG00000010994	parn	100	75.940	Xenopus_tropicalis
ENSSDUG00000014555	parn	87	83.250	ENSXCOG00000015990	parn	99	82.747	Xiphophorus_couchianus
ENSSDUG00000014555	parn	100	84.157	ENSXMAG00000014783	parn	100	83.576	Xiphophorus_maculatus