EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000014631 (Gene tree)
Gene ID: 111226553
Gene Symbol: polr1a
Alias: fa26a03|sb:cb935|wu:fa26a03
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 28537 bases
Position: chrBDQW01000161.1:6849079-6877615
Accession: 111226553
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000020110	RNA_pol_Rpb1_5	PF04998.17	9.5e-101	1	1
ENSSDUP00000020110	RNA_pol_Rpb1_4	PF05000.17	1.1e-20	1	1
ENSSDUP00000020110	RNA_pol_Rpb1_2	PF00623.20	1.2e-68	1	1
ENSSDUP00000020110	RNA_pol_Rpb1_3	PF04983.18	4.5e-37	1	1
ENSSDUP00000020110	RNA_pol_Rpb1_1	PF04997.12	7e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000020463	-	6024	XM_022751754	ENSSDUP00000020110	1692 (aa)	XP_022607475	UPI000BBEABE7

Gene Model

Click here to download ENSSDUG00000014631's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000014631's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000014631	polr1a	55	45.000	ENSSDUG00000019840	polr3a	63	44.118

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000014631	polr1a	100	66.821	ENSG00000068654	POLR1A	100	66.821	Homo_sapiens
ENSSDUG00000014631	polr1a	69	89.702	ENSAPOG00000017945	polr1a	99	89.702	Acanthochromis_polyacanthus
ENSSDUG00000014631	polr1a	100	66.628	ENSAMEG00000005807	POLR1A	100	69.623	Ailuropoda_melanoleuca
ENSSDUG00000014631	polr1a	100	83.097	ENSACIG00000022147	polr1a	100	81.813	Amphilophus_citrinellus
ENSSDUG00000014631	polr1a	100	88.909	ENSAOCG00000017336	polr1a	100	89.621	Amphiprion_ocellaris
ENSSDUG00000014631	polr1a	100	88.909	ENSAPEG00000016105	polr1a	98	93.750	Amphiprion_percula
ENSSDUG00000014631	polr1a	100	90.619	ENSATEG00000016773	polr1a	100	89.381	Anabas_testudineus
ENSSDUG00000014631	polr1a	86	68.581	ENSAPLG00000013871	POLR1A	99	68.614	Anas_platyrhynchos
ENSSDUG00000014631	polr1a	99	66.047	ENSACAG00000012141	POLR1A	99	65.467	Anolis_carolinensis
ENSSDUG00000014631	polr1a	100	66.532	ENSANAG00000033927	POLR1A	100	66.512	Aotus_nancymaae
ENSSDUG00000014631	polr1a	100	81.593	ENSACLG00000020541	polr1a	100	81.357	Astatotilapia_calliptera
ENSSDUG00000014631	polr1a	100	67.380	ENSBTAG00000006481	POLR1A	100	67.553	Bos_taurus
ENSSDUG00000014631	polr1a	99	38.488	WBGene00012999	rpoa-1	98	38.431	Caenorhabditis_elegans
ENSSDUG00000014631	polr1a	100	66.416	ENSCJAG00000019547	POLR1A	100	66.474	Callithrix_jacchus
ENSSDUG00000014631	polr1a	100	67.034	ENSCAFG00000007613	POLR1A	100	67.265	Canis_familiaris
ENSSDUG00000014631	polr1a	100	67.118	ENSCAFG00020014752	POLR1A	100	67.129	Canis_lupus_dingo
ENSSDUG00000014631	polr1a	100	67.072	ENSCHIG00000018204	POLR1A	100	66.802	Capra_hircus
ENSSDUG00000014631	polr1a	100	65.629	ENSTSYG00000002761	POLR1A	100	66.145	Carlito_syrichta
ENSSDUG00000014631	polr1a	97	63.375	ENSCAPG00000010132	POLR1A	99	63.522	Cavia_aperea
ENSSDUG00000014631	polr1a	100	66.474	ENSCPOG00000012350	POLR1A	100	66.628	Cavia_porcellus
ENSSDUG00000014631	polr1a	100	66.532	ENSCCAG00000019839	POLR1A	100	66.647	Cebus_capucinus
ENSSDUG00000014631	polr1a	100	66.821	ENSCATG00000029786	POLR1A	100	66.898	Cercocebus_atys
ENSSDUG00000014631	polr1a	100	66.089	ENSCLAG00000005187	POLR1A	100	66.068	Chinchilla_lanigera
ENSSDUG00000014631	polr1a	100	66.705	ENSCSAG00000016251	POLR1A	100	66.092	Chlorocebus_sabaeus
ENSSDUG00000014631	polr1a	99	67.716	ENSCPBG00000001115	POLR1A	99	67.462	Chrysemys_picta_bellii
ENSSDUG00000014631	polr1a	99	47.918	ENSCSAVG00000007184	-	97	51.795	Ciona_savignyi
ENSSDUG00000014631	polr1a	100	64.005	ENSCANG00000031785	POLR1A	100	63.793	Colobus_angolensis_palliatus
ENSSDUG00000014631	polr1a	96	67.508	ENSCGRG00001006651	Polr1a	100	67.508	Cricetulus_griseus_chok1gshd
ENSSDUG00000014631	polr1a	60	65.373	ENSCGRG00000010834	Polr1a	100	65.433	Cricetulus_griseus_crigri
ENSSDUG00000014631	polr1a	100	79.553	ENSCSEG00000020190	polr1a	100	79.589	Cynoglossus_semilaevis
ENSSDUG00000014631	polr1a	100	82.678	ENSCVAG00000020941	polr1a	100	82.384	Cyprinodon_variegatus
ENSSDUG00000014631	polr1a	100	73.423	ENSDARG00000098375	polr1a	100	72.552	Danio_rerio
ENSSDUG00000014631	polr1a	100	63.140	ENSDNOG00000010829	POLR1A	100	63.374	Dasypus_novemcinctus
ENSSDUG00000014631	polr1a	100	65.476	ENSDORG00000008298	Polr1a	100	65.003	Dipodomys_ordii
ENSSDUG00000014631	polr1a	78	44.478	FBgn0019938	RpI1	99	42.249	Drosophila_melanogaster
ENSSDUG00000014631	polr1a	72	90.625	ENSETEG00000000412	-	71	90.625	Echinops_telfairi
ENSSDUG00000014631	polr1a	89	47.124	ENSEBUG00000005667	-	99	47.362	Eptatretus_burgeri
ENSSDUG00000014631	polr1a	100	66.705	ENSEASG00005001625	POLR1A	100	66.898	Equus_asinus_asinus
ENSSDUG00000014631	polr1a	100	66.821	ENSECAG00000010092	POLR1A	99	70.600	Equus_caballus
ENSSDUG00000014631	polr1a	100	66.821	ENSECAG00000030510	-	99	70.600	Equus_caballus
ENSSDUG00000014631	polr1a	100	66.821	ENSECAG00000036306	-	99	70.600	Equus_caballus
ENSSDUG00000014631	polr1a	85	77.328	ENSEEUG00000000676	POLR1A	84	78.035	Erinaceus_europaeus
ENSSDUG00000014631	polr1a	100	75.628	ENSELUG00000012769	polr1a	99	75.497	Esox_lucius
ENSSDUG00000014631	polr1a	100	67.516	ENSFCAG00000008966	POLR1A	100	67.342	Felis_catus
ENSSDUG00000014631	polr1a	99	65.965	ENSFALG00000010082	POLR1A	99	65.769	Ficedula_albicollis
ENSSDUG00000014631	polr1a	100	66.340	ENSFDAG00000013726	POLR1A	100	66.705	Fukomys_damarensis
ENSSDUG00000014631	polr1a	100	78.723	ENSFHEG00000005996	polr1a	100	78.125	Fundulus_heteroclitus
ENSSDUG00000014631	polr1a	100	70.154	ENSGMOG00000002230	polr1a	100	69.158	Gadus_morhua
ENSSDUG00000014631	polr1a	89	64.337	ENSGALG00000038160	-	98	64.114	Gallus_gallus
ENSSDUG00000014631	polr1a	100	81.331	ENSGAFG00000015266	polr1a	100	81.033	Gambusia_affinis
ENSSDUG00000014631	polr1a	100	83.140	ENSGACG00000018791	polr1a	100	83.198	Gasterosteus_aculeatus
ENSSDUG00000014631	polr1a	89	69.226	ENSGAGG00000004984	-	95	72.983	Gopherus_agassizii
ENSSDUG00000014631	polr1a	100	66.763	ENSGGOG00000001788	POLR1A	100	66.763	Gorilla_gorilla
ENSSDUG00000014631	polr1a	90	85.664	ENSHBUG00000020021	polr1a	98	87.795	Haplochromis_burtoni
ENSSDUG00000014631	polr1a	100	66.532	ENSHGLG00000006334	POLR1A	100	67.015	Heterocephalus_glaber_female
ENSSDUG00000014631	polr1a	100	66.340	ENSHGLG00100006614	POLR1A	100	66.821	Heterocephalus_glaber_male
ENSSDUG00000014631	polr1a	100	77.725	ENSHCOG00000003345	polr1a	100	77.431	Hippocampus_comes
ENSSDUG00000014631	polr1a	100	72.488	ENSIPUG00000013174	polr1a	100	72.430	Ictalurus_punctatus
ENSSDUG00000014631	polr1a	99	66.472	ENSSTOG00000012580	POLR1A	99	66.570	Ictidomys_tridecemlineatus
ENSSDUG00000014631	polr1a	100	66.167	ENSJJAG00000013113	Polr1a	100	67.015	Jaculus_jaculus
ENSSDUG00000014631	polr1a	100	86.761	ENSKMAG00000007399	polr1a	100	86.584	Kryptolebias_marmoratus
ENSSDUG00000014631	polr1a	94	89.792	ENSLBEG00000015401	polr1a	99	89.158	Labrus_bergylta
ENSSDUG00000014631	polr1a	53	70.684	ENSLACG00000003218	polr1a	100	70.684	Latimeria_chalumnae
ENSSDUG00000014631	polr1a	100	72.225	ENSLOCG00000010881	polr1a	100	71.462	Lepisosteus_oculatus
ENSSDUG00000014631	polr1a	100	67.110	ENSLAFG00000014948	POLR1A	100	66.899	Loxodonta_africana
ENSSDUG00000014631	polr1a	100	66.358	ENSMFAG00000046097	POLR1A	100	66.264	Macaca_fascicularis
ENSSDUG00000014631	polr1a	100	66.358	ENSMMUG00000015815	POLR1A	100	66.264	Macaca_mulatta
ENSSDUG00000014631	polr1a	100	66.358	ENSMNEG00000043313	POLR1A	100	66.264	Macaca_nemestrina
ENSSDUG00000014631	polr1a	100	66.474	ENSMLEG00000042428	POLR1A	100	66.034	Mandrillus_leucophaeus
ENSSDUG00000014631	polr1a	100	89.480	ENSMAMG00000016565	polr1a	100	89.184	Mastacembelus_armatus
ENSSDUG00000014631	polr1a	100	88.239	ENSMZEG00005004915	polr1a	100	88.121	Maylandia_zebra
ENSSDUG00000014631	polr1a	99	63.767	ENSMGAG00000013111	POLR1A	99	63.789	Meleagris_gallopavo
ENSSDUG00000014631	polr1a	91	66.351	ENSMAUG00000008497	Polr1a	100	66.350	Mesocricetus_auratus
ENSSDUG00000014631	polr1a	100	66.186	ENSMICG00000000757	POLR1A	100	66.416	Microcebus_murinus
ENSSDUG00000014631	polr1a	100	66.763	ENSMOCG00000000122	Polr1a	100	67.072	Microtus_ochrogaster
ENSSDUG00000014631	polr1a	100	82.471	ENSMMOG00000010216	polr1a	100	82.176	Mola_mola
ENSSDUG00000014631	polr1a	100	62.628	ENSMODG00000009335	POLR1A	80	67.786	Monodelphis_domestica
ENSSDUG00000014631	polr1a	100	88.090	ENSMALG00000013363	polr1a	100	87.913	Monopterus_albus
ENSSDUG00000014631	polr1a	100	65.744	MGP_CAROLIEiJ_G0028494	Polr1a	100	66.068	Mus_caroli
ENSSDUG00000014631	polr1a	100	65.668	ENSMUSG00000049553	Polr1a	100	66.010	Mus_musculus
ENSSDUG00000014631	polr1a	100	65.782	MGP_PahariEiJ_G0022230	Polr1a	100	66.300	Mus_pahari
ENSSDUG00000014631	polr1a	100	65.190	MGP_SPRETEiJ_G0029499	Polr1a	100	65.131	Mus_spretus
ENSSDUG00000014631	polr1a	100	67.072	ENSMPUG00000009135	POLR1A	100	67.246	Mustela_putorius_furo
ENSSDUG00000014631	polr1a	100	66.399	ENSMLUG00000015723	POLR1A	100	66.858	Myotis_lucifugus
ENSSDUG00000014631	polr1a	100	66.609	ENSNGAG00000017907	Polr1a	100	66.454	Nannospalax_galili
ENSSDUG00000014631	polr1a	100	87.884	ENSNBRG00000000519	polr1a	100	87.825	Neolamprologus_brichardi
ENSSDUG00000014631	polr1a	100	65.014	ENSNLEG00000002264	POLR1A	100	64.977	Nomascus_leucogenys
ENSSDUG00000014631	polr1a	76	84.252	ENSMEUG00000011665	-	75	84.252	Notamacropus_eugenii
ENSSDUG00000014631	polr1a	99	62.028	ENSOPRG00000008269	POLR1A	100	61.910	Ochotona_princeps
ENSSDUG00000014631	polr1a	100	66.821	ENSODEG00000003542	POLR1A	100	67.054	Octodon_degus
ENSSDUG00000014631	polr1a	100	87.904	ENSONIG00000015895	polr1a	100	87.786	Oreochromis_niloticus
ENSSDUG00000014631	polr1a	100	65.997	ENSOCUG00000010138	POLR1A	100	67.093	Oryctolagus_cuniculus
ENSSDUG00000014631	polr1a	100	83.225	ENSORLG00000008753	polr1a	99	83.048	Oryzias_latipes
ENSSDUG00000014631	polr1a	100	79.776	ENSORLG00020020726	polr1a	99	79.363	Oryzias_latipes_hni
ENSSDUG00000014631	polr1a	95	90.426	ENSORLG00015016071	polr1a	98	90.426	Oryzias_latipes_hsok
ENSSDUG00000014631	polr1a	100	66.551	ENSOGAG00000004031	POLR1A	100	66.204	Otolemur_garnettii
ENSSDUG00000014631	polr1a	100	67.512	ENSOARG00000020601	POLR1A	100	67.359	Ovis_aries
ENSSDUG00000014631	polr1a	100	66.705	ENSPPAG00000042450	POLR1A	100	66.705	Pan_paniscus
ENSSDUG00000014631	polr1a	100	67.129	ENSPPRG00000006702	POLR1A	100	67.652	Panthera_pardus
ENSSDUG00000014631	polr1a	100	66.724	ENSPTIG00000018783	POLR1A	100	67.244	Panthera_tigris_altaica
ENSSDUG00000014631	polr1a	100	66.647	ENSPTRG00000012147	POLR1A	100	66.705	Pan_troglodytes
ENSSDUG00000014631	polr1a	100	66.647	ENSPANG00000025908	POLR1A	100	66.725	Papio_anubis
ENSSDUG00000014631	polr1a	100	71.278	ENSPKIG00000005468	polr1a	100	71.320	Paramormyrops_kingsleyae
ENSSDUG00000014631	polr1a	63	65.903	ENSPSIG00000009321	-	99	65.680	Pelodiscus_sinensis
ENSSDUG00000014631	polr1a	55	83.117	ENSPMGG00000009718	polr1a	95	82.900	Periophthalmus_magnuspinnatus
ENSSDUG00000014631	polr1a	100	66.667	ENSPEMG00000022224	Polr1a	100	66.396	Peromyscus_maniculatus_bairdii
ENSSDUG00000014631	polr1a	95	65.591	ENSPCIG00000004222	POLR1A	99	65.431	Phascolarctos_cinereus
ENSSDUG00000014631	polr1a	100	82.902	ENSPFOG00000005025	polr1a	100	83.196	Poecilia_formosa
ENSSDUG00000014631	polr1a	100	82.892	ENSPLAG00000021389	polr1a	100	83.069	Poecilia_latipinna
ENSSDUG00000014631	polr1a	100	79.789	ENSPMEG00000006463	polr1a	100	80.445	Poecilia_mexicana
ENSSDUG00000014631	polr1a	100	82.913	ENSPREG00000002389	polr1a	100	83.030	Poecilia_reticulata
ENSSDUG00000014631	polr1a	100	66.068	ENSPPYG00000012217	POLR1A	100	66.242	Pongo_abelii
ENSSDUG00000014631	polr1a	91	66.151	ENSPCAG00000011582	POLR1A	91	66.151	Procavia_capensis
ENSSDUG00000014631	polr1a	100	66.590	ENSPCOG00000026987	POLR1A	100	66.705	Propithecus_coquereli
ENSSDUG00000014631	polr1a	95	66.520	ENSPVAG00000012674	POLR1A	95	66.839	Pteropus_vampyrus
ENSSDUG00000014631	polr1a	100	88.121	ENSPNYG00000000026	polr1a	100	88.002	Pundamilia_nyererei
ENSSDUG00000014631	polr1a	100	73.322	ENSPNAG00000019223	polr1a	100	72.488	Pygocentrus_nattereri
ENSSDUG00000014631	polr1a	100	66.416	ENSRNOG00000009545	Polr1a	100	66.108	Rattus_norvegicus
ENSSDUG00000014631	polr1a	100	66.242	ENSRBIG00000028335	POLR1A	100	66.130	Rhinopithecus_bieti
ENSSDUG00000014631	polr1a	100	66.242	ENSRROG00000031473	POLR1A	100	66.130	Rhinopithecus_roxellana
ENSSDUG00000014631	polr1a	99	35.921	YOR341W	RPA190	99	35.702	Saccharomyces_cerevisiae
ENSSDUG00000014631	polr1a	100	66.358	ENSSBOG00000030262	POLR1A	100	65.727	Saimiri_boliviensis_boliviensis
ENSSDUG00000014631	polr1a	100	61.370	ENSSHAG00000014739	POLR1A	100	61.370	Sarcophilus_harrisii
ENSSDUG00000014631	polr1a	100	71.270	ENSSFOG00015019716	polr1a	100	71.270	Scleropages_formosus
ENSSDUG00000014631	polr1a	100	89.374	ENSSMAG00000014342	polr1a	100	89.138	Scophthalmus_maximus
ENSSDUG00000014631	polr1a	100	93.522	ENSSLDG00000024095	polr1a	100	93.522	Seriola_lalandi_dorsalis
ENSSDUG00000014631	polr1a	70	95.122	ENSSARG00000003136	-	70	95.122	Sorex_araneus
ENSSDUG00000014631	polr1a	95	74.000	ENSSPUG00000004215	POLR1A	98	74.000	Sphenodon_punctatus
ENSSDUG00000014631	polr1a	64	89.217	ENSSPAG00000016341	polr1a	95	89.217	Stegastes_partitus
ENSSDUG00000014631	polr1a	83	68.061	ENSSSCG00000008226	POLR1A	99	67.972	Sus_scrofa
ENSSDUG00000014631	polr1a	99	65.726	ENSTGUG00000010704	POLR1A	100	64.930	Taeniopygia_guttata
ENSSDUG00000014631	polr1a	100	81.040	ENSTRUG00000002210	polr1a	99	80.803	Takifugu_rubripes
ENSSDUG00000014631	polr1a	100	74.158	ENSTNIG00000010116	polr1a	100	74.316	Tetraodon_nigroviridis
ENSSDUG00000014631	polr1a	73	84.071	ENSTBEG00000008646	POLR1A	74	84.071	Tupaia_belangeri
ENSSDUG00000014631	polr1a	100	64.754	ENSTTRG00000008597	POLR1A	100	64.812	Tursiops_truncatus
ENSSDUG00000014631	polr1a	69	68.359	ENSUAMG00000012158	-	94	68.359	Ursus_americanus
ENSSDUG00000014631	polr1a	100	66.530	ENSUMAG00000006700	POLR1A	100	66.764	Ursus_maritimus
ENSSDUG00000014631	polr1a	100	67.092	ENSVVUG00000001245	POLR1A	100	67.149	Vulpes_vulpes
ENSSDUG00000014631	polr1a	100	62.443	ENSXETG00000001952	polr1a	99	64.689	Xenopus_tropicalis
ENSSDUG00000014631	polr1a	100	83.304	ENSXMAG00000004032	polr1a	100	82.728	Xiphophorus_maculatus