EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSDUG00000014743 (Gene tree)
Gene ID
111217376
Gene Symbol
pabpc1l
Alias
fi20g03|wu:fi20g03|zgc:55855
Full Name
embryonic polyadenylate-binding protein-like
Gene Type
protein_coding
Species
Seriola_dumerili
Status
putative
Strand
Minus strand
Length
14943 bases
Position
chrBDQW01000043.1:2536020-2550962
Accession
111217376
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSDUP00000020324PABPPF00658.184.4e-2911
ENSSDUP00000020294PABPPF00658.184.7e-2911
ENSSDUP00000020294RRM_5PF13893.66.7e-0812
ENSSDUP00000020294RRM_5PF13893.66.7e-0822
ENSSDUP00000020324RRM_5PF13893.67.9e-0811
ENSSDUP00000020294RRM_1PF00076.222.4e-8814
ENSSDUP00000020294RRM_1PF00076.222.4e-8824
ENSSDUP00000020294RRM_1PF00076.222.4e-8834
ENSSDUP00000020294RRM_1PF00076.222.4e-8844
ENSSDUP00000020324RRM_1PF00076.222.6e-8814
ENSSDUP00000020324RRM_1PF00076.222.6e-8824
ENSSDUP00000020324RRM_1PF00076.222.6e-8834
ENSSDUP00000020324RRM_1PF00076.222.6e-8844
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSDUT00000020686-1857XM_022739211ENSSDUP00000020324618 (aa)XP_022594932-
ENSSDUT00000020655-2316-ENSSDUP00000020294656 (aa)--
Gene Model
Click here to download ENSSDUG00000014743's gene model file
Pathways
Pathway IDPathway NameSource
sdu03013RNA transportKEGG
sdu03015mRNA surveillance pathwayKEGG
sdu03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000014743's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSDUG00000014743pabpc1l6039.474ENSSDUG00000013544rbm195739.474
ENSSDUG00000014743pabpc1l6030.000ENSSDUG00000008140ELAVL28530.000
ENSSDUG00000014743pabpc1l5930.108ENSSDUG00000012465elavl1a8930.108
ENSSDUG00000014743pabpc1l6030.263ENSSDUG00000000045elavl48030.464
ENSSDUG00000014743pabpc1l9968.545ENSSDUG00000011965pabpc1b9868.396
ENSSDUG00000014743pabpc1l10067.038ENSSDUG00000012683pabpc49867.161
ENSSDUG00000014743pabpc1l6132.673ENSSDUG00000013656RBMS35132.673
ENSSDUG00000014743pabpc1l5831.515ENSSDUG00000006128ncl7931.515
ENSSDUG00000014743pabpc1l6130.769ENSSDUG00000003453-7030.108
ENSSDUG00000014743pabpc1l5934.066ENSSDUG00000015257-9833.696
ENSSDUG00000014743pabpc1l5036.047ENSSDUG00000007239celf3b8036.047
ENSSDUG00000014743pabpc1l9968.770ENSSDUG00000006675pabpc1a9868.770
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSDUG00000014743pabpc1l9968.146ENSG00000101104PABPC1L9977.160Homo_sapiens
ENSSDUG00000014743pabpc1l9982.931ENSAPOG00000010842pabpc1l9982.931Acanthochromis_polyacanthus
ENSSDUG00000014743pabpc1l9964.877ENSAMEG00000004099PABPC1L10064.319Ailuropoda_melanoleuca
ENSSDUG00000014743pabpc1l9992.961ENSACIG00000021004-10092.961Amphilophus_citrinellus
ENSSDUG00000014743pabpc1l10086.262ENSAOCG00000006167-10086.262Amphiprion_ocellaris
ENSSDUG00000014743pabpc1l10087.981ENSAPEG00000010558-10087.981Amphiprion_percula
ENSSDUG00000014743pabpc1l10090.461ENSATEG00000007428pabpc1l10091.097Anabas_testudineus
ENSSDUG00000014743pabpc1l9870.994ENSAPLG00000008415PABPC1L9970.952Anas_platyrhynchos
ENSSDUG00000014743pabpc1l9973.934ENSACAG00000011841PABPC1L9973.934Anolis_carolinensis
ENSSDUG00000014743pabpc1l9967.670ENSANAG00000026826PABPC1L9967.670Aotus_nancymaae
ENSSDUG00000014743pabpc1l10090.415ENSACLG00000024791pabpc1l10090.415Astatotilapia_calliptera
ENSSDUG00000014743pabpc1l10080.096ENSAMXG00000013552pabpc1l10080.096Astyanax_mexicanus
ENSSDUG00000014743pabpc1l6388.095ENSBTAG00000055300-10088.095Bos_taurus
ENSSDUG00000014743pabpc1l6564.029ENSBTAG00000016849PABPC1L8763.509Bos_taurus
ENSSDUG00000014743pabpc1l5979.310ENSCJAG00000038506-10079.310Callithrix_jacchus
ENSSDUG00000014743pabpc1l9967.829ENSCJAG00000017628PABPC1L9967.829Callithrix_jacchus
ENSSDUG00000014743pabpc1l9963.927ENSCAFG00000009573PABPC1L10063.927Canis_familiaris
ENSSDUG00000014743pabpc1l9968.203ENSCAFG00020013828PABPC1L9968.203Canis_lupus_dingo
ENSSDUG00000014743pabpc1l9868.013ENSCHIG00000025759PABPC1L9168.013Capra_hircus
ENSSDUG00000014743pabpc1l9967.036ENSTSYG00000006645PABPC1L9967.036Carlito_syrichta
ENSSDUG00000014743pabpc1l9862.976ENSCAPG00000014519PABPC1L9962.976Cavia_aperea
ENSSDUG00000014743pabpc1l9964.809ENSCPOG00000013633PABPC1L9964.809Cavia_porcellus
ENSSDUG00000014743pabpc1l9966.878ENSCCAG00000023338PABPC1L9967.512Cebus_capucinus
ENSSDUG00000014743pabpc1l9968.463ENSCATG00000034065PABPC1L9968.463Cercocebus_atys
ENSSDUG00000014743pabpc1l9963.376ENSCLAG00000005298PABPC1L9964.331Chinchilla_lanigera
ENSSDUG00000014743pabpc1l9967.987ENSCSAG00000014242PABPC1L9967.987Chlorocebus_sabaeus
ENSSDUG00000014743pabpc1l5588.235ENSCPBG00000007810-8388.235Chrysemys_picta_bellii
ENSSDUG00000014743pabpc1l7279.551ENSCPBG00000017755-10079.551Chrysemys_picta_bellii
ENSSDUG00000014743pabpc1l8449.901ENSCING00000002796-9750.297Ciona_intestinalis
ENSSDUG00000014743pabpc1l9957.460ENSCSAVG00000003102-10082.550Ciona_savignyi
ENSSDUG00000014743pabpc1l9967.150ENSCSAVG00000004246-9667.150Ciona_savignyi
ENSSDUG00000014743pabpc1l9965.000ENSCANG00000037530PABPC1L9965.000Colobus_angolensis_palliatus
ENSSDUG00000014743pabpc1l9960.987ENSCGRG00001021938Pabpc1l9960.987Cricetulus_griseus_chok1gshd
ENSSDUG00000014743pabpc1l9960.987ENSCGRG00000007946Pabpc1l9960.987Cricetulus_griseus_crigri
ENSSDUG00000014743pabpc1l9977.760ENSCSEG00000021295pabpc1l9977.760Cynoglossus_semilaevis
ENSSDUG00000014743pabpc1l10086.306ENSCVAG00000015943-9996.947Cyprinodon_variegatus
ENSSDUG00000014743pabpc1l9979.107ENSDARG00000002597pabpc1l8895.385Danio_rerio
ENSSDUG00000014743pabpc1l9968.750ENSDNOG00000048450PABPC1L9968.750Dasypus_novemcinctus
ENSSDUG00000014743pabpc1l9965.224ENSDORG00000001067Pabpc1l9965.224Dipodomys_ordii
ENSSDUG00000014743pabpc1l9577.642ENSETEG00000009969PABPC1L7277.642Echinops_telfairi
ENSSDUG00000014743pabpc1l6386.905ENSEASG00005023408-10086.905Equus_asinus_asinus
ENSSDUG00000014743pabpc1l5175.316ENSEASG00005023407-6475.316Equus_asinus_asinus
ENSSDUG00000014743pabpc1l6867.382ENSECAG00000040139-8467.382Equus_caballus
ENSSDUG00000014743pabpc1l9966.559ENSEEUG00000005978PABPC1L9966.559Erinaceus_europaeus
ENSSDUG00000014743pabpc1l10081.399ENSELUG00000001811pabpc1l10081.399Esox_lucius
ENSSDUG00000014743pabpc1l9968.839ENSFCAG00000011692PABPC1L9968.839Felis_catus
ENSSDUG00000014743pabpc1l8571.639ENSFALG00000005372PABPC1L9967.167Ficedula_albicollis
ENSSDUG00000014743pabpc1l9964.887ENSFDAG00000008291PABPC1L9965.154Fukomys_damarensis
ENSSDUG00000014743pabpc1l10087.700ENSFHEG00000003398pabpc1l10087.700Fundulus_heteroclitus
ENSSDUG00000014743pabpc1l9981.994ENSGMOG00000004437pabpc1l9981.731Gadus_morhua
ENSSDUG00000014743pabpc1l9972.889ENSGALG00000004123PABPC1L9980.048Gallus_gallus
ENSSDUG00000014743pabpc1l10086.515ENSGAFG00000021057pabpc1l10086.515Gambusia_affinis
ENSSDUG00000014743pabpc1l9987.220ENSGACG00000002792pabpc1l10087.220Gasterosteus_aculeatus
ENSSDUG00000014743pabpc1l9973.810ENSGAGG00000000589PABPC1L9873.810Gopherus_agassizii
ENSSDUG00000014743pabpc1l9968.146ENSGGOG00000004584PABPC1L9968.146Gorilla_gorilla
ENSSDUG00000014743pabpc1l10090.256ENSHBUG00000006134pabpc1l10090.256Haplochromis_burtoni
ENSSDUG00000014743pabpc1l10064.455ENSHGLG00000008434PABPC1L9964.455Heterocephalus_glaber_female
ENSSDUG00000014743pabpc1l10064.455ENSHGLG00100012151PABPC1L9964.455Heterocephalus_glaber_male
ENSSDUG00000014743pabpc1l5885.393ENSHGLG00100019506-10085.393Heterocephalus_glaber_male
ENSSDUG00000014743pabpc1l9987.022ENSHCOG00000009270pabpc1l10087.022Hippocampus_comes
ENSSDUG00000014743pabpc1l5960.920ENSIPUG00000006760-8860.920Ictalurus_punctatus
ENSSDUG00000014743pabpc1l10078.469ENSIPUG00000012602pabpc1l10078.469Ictalurus_punctatus
ENSSDUG00000014743pabpc1l5960.920ENSIPUG00000006780-8560.920Ictalurus_punctatus
ENSSDUG00000014743pabpc1l9967.680ENSSTOG00000003739PABPC1L9967.680Ictidomys_tridecemlineatus
ENSSDUG00000014743pabpc1l9951.858ENSJJAG00000022406Pabpc1l9951.858Jaculus_jaculus
ENSSDUG00000014743pabpc1l10086.422ENSKMAG00000016847pabpc1l10086.422Kryptolebias_marmoratus
ENSSDUG00000014743pabpc1l10090.256ENSLBEG00000010084pabpc1l10090.256Labrus_bergylta
ENSSDUG00000014743pabpc1l9971.607ENSLACG00000005762PABPC1L9874.254Latimeria_chalumnae
ENSSDUG00000014743pabpc1l9979.873ENSLOCG00000007519pabpc1l9979.873Lepisosteus_oculatus
ENSSDUG00000014743pabpc1l9966.301ENSLAFG00000003553PABPC1L10066.301Loxodonta_africana
ENSSDUG00000014743pabpc1l9968.463ENSMFAG00000040365PABPC1L9968.463Macaca_fascicularis
ENSSDUG00000014743pabpc1l9967.353ENSMNEG00000032298PABPC1L9967.353Macaca_nemestrina
ENSSDUG00000014743pabpc1l9968.463ENSMLEG00000043139PABPC1L9968.463Mandrillus_leucophaeus
ENSSDUG00000014743pabpc1l9791.104ENSMAMG00000011854pabpc1l9791.104Mastacembelus_armatus
ENSSDUG00000014743pabpc1l10090.415ENSMZEG00005023713pabpc1l10090.415Maylandia_zebra
ENSSDUG00000014743pabpc1l9972.524ENSMGAG00000003674PABPC1L9972.524Meleagris_gallopavo
ENSSDUG00000014743pabpc1l9960.320ENSMOCG00000013186Pabpc1l9960.320Microtus_ochrogaster
ENSSDUG00000014743pabpc1l9988.800ENSMMOG00000020574-9988.800Mola_mola
ENSSDUG00000014743pabpc1l9770.407ENSMODG00000016198PABPC1L9970.407Monodelphis_domestica
ENSSDUG00000014743pabpc1l9990.076ENSMALG00000021622pabpc1l10090.280Monopterus_albus
ENSSDUG00000014743pabpc1l9960.925MGP_CAROLIEiJ_G0024627Pabpc1l9960.925Mus_caroli
ENSSDUG00000014743pabpc1l9960.925ENSMUSG00000054582Pabpc1l9960.925Mus_musculus
ENSSDUG00000014743pabpc1l10060.697MGP_PahariEiJ_G0026071Pabpc1l10060.697Mus_pahari
ENSSDUG00000014743pabpc1l9960.925MGP_SPRETEiJ_G0025549Pabpc1l9960.925Mus_spretus
ENSSDUG00000014743pabpc1l9969.169ENSMPUG00000017646PABPC1L9969.169Mustela_putorius_furo
ENSSDUG00000014743pabpc1l9865.714ENSMLUG00000006324PABPC1L9865.714Myotis_lucifugus
ENSSDUG00000014743pabpc1l9962.300ENSNGAG00000010458Pabpc1l9962.679Nannospalax_galili
ENSSDUG00000014743pabpc1l9993.494ENSNBRG00000016633pabpc1l10093.494Neolamprologus_brichardi
ENSSDUG00000014743pabpc1l9066.007ENSMEUG00000007905-8966.007Notamacropus_eugenii
ENSSDUG00000014743pabpc1l9966.719ENSOPRG00000011846PABPC1L9966.719Ochotona_princeps
ENSSDUG00000014743pabpc1l9960.548ENSODEG00000015482PABPC1L9960.548Octodon_degus
ENSSDUG00000014743pabpc1l5979.375ENSODEG00000002920-9779.375Octodon_degus
ENSSDUG00000014743pabpc1l10090.415ENSONIG00000017314pabpc1l10090.415Oreochromis_niloticus
ENSSDUG00000014743pabpc1l9062.456ENSOANG00000015793-10062.456Ornithorhynchus_anatinus
ENSSDUG00000014743pabpc1l9964.188ENSOCUG00000003005PABPC1L9964.188Oryctolagus_cuniculus
ENSSDUG00000014743pabpc1l9990.931ENSORLG00000010322pabpc1l10090.931Oryzias_latipes
ENSSDUG00000014743pabpc1l9990.931ENSORLG00020021193pabpc1l10090.931Oryzias_latipes_hni
ENSSDUG00000014743pabpc1l9990.931ENSORLG00015017018pabpc1l10090.931Oryzias_latipes_hsok
ENSSDUG00000014743pabpc1l10085.976ENSOMEG00000010789pabpc1l10085.976Oryzias_melastigma
ENSSDUG00000014743pabpc1l9967.036ENSOGAG00000032999PABPC1L9967.036Otolemur_garnettii
ENSSDUG00000014743pabpc1l9967.937ENSOARG00000004578PABPC1L9967.937Ovis_aries
ENSSDUG00000014743pabpc1l9968.304ENSPPAG00000039677PABPC1L9968.304Pan_paniscus
ENSSDUG00000014743pabpc1l6269.136ENSPPRG00000019327-9869.136Panthera_pardus
ENSSDUG00000014743pabpc1l9968.700ENSPTIG00000006524PABPC1L9968.700Panthera_tigris_altaica
ENSSDUG00000014743pabpc1l6277.469ENSPTRG00000013531PABPC1L9977.469Pan_troglodytes
ENSSDUG00000014743pabpc1l9968.463ENSPANG00000018788PABPC1L9968.463Papio_anubis
ENSSDUG00000014743pabpc1l5383.969ENSPKIG00000016810-9383.969Paramormyrops_kingsleyae
ENSSDUG00000014743pabpc1l10078.855ENSPKIG00000007322pabpc1l10078.855Paramormyrops_kingsleyae
ENSSDUG00000014743pabpc1l6781.535ENSPSIG00000013289PABPC1L9981.535Pelodiscus_sinensis
ENSSDUG00000014743pabpc1l6296.212ENSPMGG00000023117pabpc1l9996.212Periophthalmus_magnuspinnatus
ENSSDUG00000014743pabpc1l7088.718ENSPMGG00000023121-9188.718Periophthalmus_magnuspinnatus
ENSSDUG00000014743pabpc1l9960.828ENSPEMG00000020671Pabpc1l9960.287Peromyscus_maniculatus_bairdii
ENSSDUG00000014743pabpc1l10088.179ENSPFOG00000013241pabpc1l10088.179Poecilia_formosa
ENSSDUG00000014743pabpc1l10088.019ENSPLAG00000017490-10088.019Poecilia_latipinna
ENSSDUG00000014743pabpc1l6298.462ENSPLAG00000023686-9298.462Poecilia_latipinna
ENSSDUG00000014743pabpc1l10088.019ENSPMEG00000007677pabpc1l10088.019Poecilia_mexicana
ENSSDUG00000014743pabpc1l6298.462ENSPMEG00000009185-8898.462Poecilia_mexicana
ENSSDUG00000014743pabpc1l6793.917ENSPREG00000015886pabpc1l9993.917Poecilia_reticulata
ENSSDUG00000014743pabpc1l9968.621ENSPPYG00000011042PABPC1L9968.621Pongo_abelii
ENSSDUG00000014743pabpc1l6185.938ENSPCAG00000011787-7585.938Procavia_capensis
ENSSDUG00000014743pabpc1l9968.463ENSPCOG00000020630PABPC1L9968.463Propithecus_coquereli
ENSSDUG00000014743pabpc1l9968.051ENSPVAG00000012663PABPC1L9968.051Pteropus_vampyrus
ENSSDUG00000014743pabpc1l9993.735ENSPNYG00000004101pabpc1l10093.735Pundamilia_nyererei
ENSSDUG00000014743pabpc1l10073.408ENSPNAG00000021248pabpc1l10073.408Pygocentrus_nattereri
ENSSDUG00000014743pabpc1l9960.664ENSRNOG00000012750Pabpc1l9960.890Rattus_norvegicus
ENSSDUG00000014743pabpc1l9968.304ENSRBIG00000035381PABPC1L9968.304Rhinopithecus_bieti
ENSSDUG00000014743pabpc1l9968.146ENSRROG00000044498PABPC1L9968.146Rhinopithecus_roxellana
ENSSDUG00000014743pabpc1l9967.512ENSSBOG00000009532-9967.512Saimiri_boliviensis_boliviensis
ENSSDUG00000014743pabpc1l9865.859ENSSHAG00000011446PABPC1L10065.859Sarcophilus_harrisii
ENSSDUG00000014743pabpc1l10078.254ENSSFOG00015017304pabpc1l10078.254Scleropages_formosus
ENSSDUG00000014743pabpc1l10090.323ENSSMAG00000010516pabpc1l9898.450Scophthalmus_maximus
ENSSDUG00000014743pabpc1l9899.036ENSSLDG00000006981pabpc1l9896.347Seriola_lalandi_dorsalis
ENSSDUG00000014743pabpc1l9972.196ENSSPUG00000004233PABPC1L9972.196Sphenodon_punctatus
ENSSDUG00000014743pabpc1l10077.832ENSSPAG00000017137pabpc1l10077.832Stegastes_partitus
ENSSDUG00000014743pabpc1l9968.153ENSSSCG00000007382PABPC1L9968.153Sus_scrofa
ENSSDUG00000014743pabpc1l9970.249ENSTGUG00000005114PABPC1L10070.249Taeniopygia_guttata
ENSSDUG00000014743pabpc1l9788.099ENSTRUG00000011085pabpc1l9788.099Takifugu_rubripes
ENSSDUG00000014743pabpc1l9985.645ENSTNIG00000017903pabpc1l9885.645Tetraodon_nigroviridis
ENSSDUG00000014743pabpc1l9478.082ENSTBEG00000002851PABPC1L7978.082Tupaia_belangeri
ENSSDUG00000014743pabpc1l9465.997ENSTTRG00000007618PABPC1L10066.232Tursiops_truncatus
ENSSDUG00000014743pabpc1l9967.423ENSUAMG00000017682PABPC1L9967.423Ursus_americanus
ENSSDUG00000014743pabpc1l6674.930ENSUMAG00000025436PABPC1L9274.930Ursus_maritimus
ENSSDUG00000014743pabpc1l9977.075ENSVVUG00000018939PABPC1L9977.075Vulpes_vulpes
ENSSDUG00000014743pabpc1l9971.111ENSXETG00000022831pabpc1l9971.111Xenopus_tropicalis
ENSSDUG00000014743pabpc1l9991.827ENSXCOG00000005459pabpc1l9993.617Xiphophorus_couchianus
ENSSDUG00000014743pabpc1l10087.540ENSXMAG00000017135pabpc1l10087.540Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us