EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000015015 (Gene tree)
Gene ID: 111224500
Gene Symbol: rbm17
Alias: zgc:55840
Full Name: RNA binding motif protein 17
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 12027 bases
Position: chrBDQW01000138.1:15590886-15602912
Accession: 111224500
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000020693	RRM_1	PF00076.22	3.1e-05	1	1
ENSSDUP00000020658	RRM_1	PF00076.22	3.4e-05	1	1
ENSSDUP00000020641	RRM_1	PF00076.22	3.7e-05	1	1
ENSSDUP00000020693	G-patch	PF01585.23	4.2e-13	1	1
ENSSDUP00000020658	G-patch	PF01585.23	4.6e-13	1	1
ENSSDUP00000020641	G-patch	PF01585.23	4.8e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000021017	-	3330	XM_022749005	ENSSDUP00000020641	429 (aa)	XP_022604726	UPI000BBF3016
ENSSDUT00000021069	-	1164	-	ENSSDUP00000020693	387 (aa)	-	-
ENSSDUT00000021034	-	3279	XM_022749006	ENSSDUP00000020658	412 (aa)	XP_022604727	UPI000BBEBBBF

Gene Model

Click here to download ENSSDUG00000015015's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000015015's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000015015	rbm17	100	81.840	ENSG00000134453	RBM17	100	81.840	Homo_sapiens
ENSSDUG00000015015	rbm17	99	95.588	ENSAPOG00000007101	rbm17	99	95.588	Acanthochromis_polyacanthus
ENSSDUG00000015015	rbm17	100	82.082	ENSAMEG00000002107	RBM17	100	82.082	Ailuropoda_melanoleuca
ENSSDUG00000015015	rbm17	100	91.605	ENSACIG00000006251	rbm17	100	91.605	Amphilophus_citrinellus
ENSSDUG00000015015	rbm17	100	95.388	ENSAOCG00000014892	rbm17	100	95.388	Amphiprion_ocellaris
ENSSDUG00000015015	rbm17	100	95.388	ENSAPEG00000022779	rbm17	100	95.388	Amphiprion_percula
ENSSDUG00000015015	rbm17	100	93.240	ENSATEG00000004406	rbm17	100	93.240	Anabas_testudineus
ENSSDUG00000015015	rbm17	100	83.293	ENSAPLG00000004190	RBM17	100	83.010	Anas_platyrhynchos
ENSSDUG00000015015	rbm17	90	79.319	ENSACAG00000005418	RBM17	99	78.892	Anolis_carolinensis
ENSSDUG00000015015	rbm17	100	82.324	ENSANAG00000030127	RBM17	98	86.777	Aotus_nancymaae
ENSSDUG00000015015	rbm17	100	72.613	ENSANAG00000019330	-	95	85.345	Aotus_nancymaae
ENSSDUG00000015015	rbm17	100	92.443	ENSACLG00000003928	rbm17	100	92.443	Astatotilapia_calliptera
ENSSDUG00000015015	rbm17	100	83.991	ENSAMXG00000005853	rbm17	100	84.131	Astyanax_mexicanus
ENSSDUG00000015015	rbm17	100	80.872	ENSBTAG00000011094	-	100	80.872	Bos_taurus
ENSSDUG00000015015	rbm17	100	82.082	ENSBTAG00000021951	RBM17	100	82.082	Bos_taurus
ENSSDUG00000015015	rbm17	74	34.194	WBGene00010233	F58B3.7	91	32.915	Caenorhabditis_elegans
ENSSDUG00000015015	rbm17	100	82.324	ENSCJAG00000020573	RBM17	100	82.324	Callithrix_jacchus
ENSSDUG00000015015	rbm17	100	82.082	ENSCAFG00000005206	RBM17	100	82.082	Canis_familiaris
ENSSDUG00000015015	rbm17	100	81.122	ENSCAFG00020005420	RBM17	100	82.234	Canis_lupus_dingo
ENSSDUG00000015015	rbm17	100	83.505	ENSCHIG00000023204	-	100	83.505	Capra_hircus
ENSSDUG00000015015	rbm17	100	79.903	ENSCHIG00000019921	-	100	79.903	Capra_hircus
ENSSDUG00000015015	rbm17	100	81.250	ENSTSYG00000001165	RBM17	99	88.136	Carlito_syrichta
ENSSDUG00000015015	rbm17	96	67.914	ENSCAPG00000006275	RBM17	100	71.875	Cavia_aperea
ENSSDUG00000015015	rbm17	100	82.609	ENSCPOG00000005679	RBM17	99	82.609	Cavia_porcellus
ENSSDUG00000015015	rbm17	100	82.324	ENSCCAG00000018655	RBM17	98	86.777	Cebus_capucinus
ENSSDUG00000015015	rbm17	100	83.247	ENSCATG00000041566	RBM17	97	87.500	Cercocebus_atys
ENSSDUG00000015015	rbm17	100	81.250	ENSCLAG00000012195	RBM17	99	81.250	Chinchilla_lanigera
ENSSDUG00000015015	rbm17	100	81.840	ENSCSAG00000013564	RBM17	100	81.840	Chlorocebus_sabaeus
ENSSDUG00000015015	rbm17	92	65.183	ENSCHOG00000005131	RBM17	100	65.183	Choloepus_hoffmanni
ENSSDUG00000015015	rbm17	100	82.324	ENSCPBG00000019836	RBM17	100	82.039	Chrysemys_picta_bellii
ENSSDUG00000015015	rbm17	100	46.081	ENSCSAVG00000008782	-	100	45.199	Ciona_savignyi
ENSSDUG00000015015	rbm17	97	73.936	ENSCANG00000023715	-	99	74.271	Colobus_angolensis_palliatus
ENSSDUG00000015015	rbm17	100	81.598	ENSCANG00000030987	RBM17	97	87.500	Colobus_angolensis_palliatus
ENSSDUG00000015015	rbm17	100	81.490	ENSCGRG00001013842	Rbm17	100	81.490	Cricetulus_griseus_chok1gshd
ENSSDUG00000015015	rbm17	100	66.667	ENSCGRG00001009256	-	100	64.962	Cricetulus_griseus_chok1gshd
ENSSDUG00000015015	rbm17	100	81.490	ENSCGRG00000006907	Rbm17	100	81.490	Cricetulus_griseus_crigri
ENSSDUG00000015015	rbm17	100	87.407	ENSCSEG00000018164	rbm17	100	87.136	Cynoglossus_semilaevis
ENSSDUG00000015015	rbm17	100	88.041	ENSCVAG00000002476	rbm17	100	88.295	Cyprinodon_variegatus
ENSSDUG00000015015	rbm17	100	77.136	ENSDARG00000031346	rbm17	100	79.446	Danio_rerio
ENSSDUG00000015015	rbm17	100	81.840	ENSDNOG00000035920	RBM17	100	81.840	Dasypus_novemcinctus
ENSSDUG00000015015	rbm17	99	38.051	FBgn0086683	Spf45	99	36.446	Drosophila_melanogaster
ENSSDUG00000015015	rbm17	89	84.834	ENSETEG00000006642	RBM17	83	87.000	Echinops_telfairi
ENSSDUG00000015015	rbm17	64	69.048	ENSEBUG00000010253	rbm17	81	69.048	Eptatretus_burgeri
ENSSDUG00000015015	rbm17	100	82.653	ENSEASG00005019205	-	100	82.653	Equus_asinus_asinus
ENSSDUG00000015015	rbm17	92	79.058	ENSEASG00005009236	-	100	79.058	Equus_asinus_asinus
ENSSDUG00000015015	rbm17	100	72.397	ENSECAG00000001379	-	100	72.397	Equus_caballus
ENSSDUG00000015015	rbm17	100	72.938	ENSECAG00000008939	RBM17	100	74.293	Equus_caballus
ENSSDUG00000015015	rbm17	86	65.449	ENSEEUG00000013077	RBM17	100	65.449	Erinaceus_europaeus
ENSSDUG00000015015	rbm17	100	85.388	ENSELUG00000006440	rbm17	100	85.388	Esox_lucius
ENSSDUG00000015015	rbm17	100	82.082	ENSFCAG00000031988	RBM17	100	82.082	Felis_catus
ENSSDUG00000015015	rbm17	100	82.082	ENSFALG00000001790	RBM17	100	81.796	Ficedula_albicollis
ENSSDUG00000015015	rbm17	100	81.250	ENSFDAG00000007470	RBM17	100	81.250	Fukomys_damarensis
ENSSDUG00000015015	rbm17	100	91.990	ENSFHEG00000001266	rbm17	100	91.990	Fundulus_heteroclitus
ENSSDUG00000015015	rbm17	99	80.986	ENSGMOG00000008438	rbm17	100	79.812	Gadus_morhua
ENSSDUG00000015015	rbm17	100	83.293	ENSGALG00000006332	RBM17	100	82.767	Gallus_gallus
ENSSDUG00000015015	rbm17	100	90.534	ENSGAFG00000019879	rbm17	100	89.594	Gambusia_affinis
ENSSDUG00000015015	rbm17	99	90.754	ENSGACG00000019174	rbm17	99	90.754	Gasterosteus_aculeatus
ENSSDUG00000015015	rbm17	100	82.324	ENSGAGG00000019906	RBM17	100	82.039	Gopherus_agassizii
ENSSDUG00000015015	rbm17	100	93.204	ENSHBUG00000016624	rbm17	100	93.204	Haplochromis_burtoni
ENSSDUG00000015015	rbm17	100	81.250	ENSHGLG00000011580	RBM17	100	81.250	Heterocephalus_glaber_female
ENSSDUG00000015015	rbm17	100	81.250	ENSHGLG00100010460	RBM17	100	81.250	Heterocephalus_glaber_male
ENSSDUG00000015015	rbm17	100	67.857	ENSHGLG00100010556	-	100	66.837	Heterocephalus_glaber_male
ENSSDUG00000015015	rbm17	99	86.885	ENSHCOG00000010865	rbm17	100	86.885	Hippocampus_comes
ENSSDUG00000015015	rbm17	100	82.448	ENSIPUG00000007699	Rbm17	100	84.171	Ictalurus_punctatus
ENSSDUG00000015015	rbm17	100	81.490	ENSSTOG00000013591	RBM17	100	81.490	Ictidomys_tridecemlineatus
ENSSDUG00000015015	rbm17	100	60.533	ENSJJAG00000000993	-	100	59.277	Jaculus_jaculus
ENSSDUG00000015015	rbm17	100	81.490	ENSJJAG00000022886	Rbm17	100	81.490	Jaculus_jaculus
ENSSDUG00000015015	rbm17	100	90.680	ENSKMAG00000021400	rbm17	100	89.394	Kryptolebias_marmoratus
ENSSDUG00000015015	rbm17	100	92.233	ENSLBEG00000000881	rbm17	100	91.841	Labrus_bergylta
ENSSDUG00000015015	rbm17	99	65.046	ENSLACG00000017297	RBM17	99	64.965	Latimeria_chalumnae
ENSSDUG00000015015	rbm17	100	83.777	ENSLOCG00000015659	rbm17	100	83.495	Lepisosteus_oculatus
ENSSDUG00000015015	rbm17	100	80.861	ENSLAFG00000011629	RBM17	100	80.861	Loxodonta_africana
ENSSDUG00000015015	rbm17	100	83.247	ENSMFAG00000035521	RBM17	97	87.500	Macaca_fascicularis
ENSSDUG00000015015	rbm17	100	81.840	ENSMMUG00000015152	RBM17	97	87.500	Macaca_mulatta
ENSSDUG00000015015	rbm17	100	83.247	ENSMNEG00000017264	RBM17	97	87.500	Macaca_nemestrina
ENSSDUG00000015015	rbm17	100	83.247	ENSMLEG00000029340	RBM17	97	87.500	Mandrillus_leucophaeus
ENSSDUG00000015015	rbm17	100	92.774	ENSMAMG00000000387	rbm17	100	92.774	Mastacembelus_armatus
ENSSDUG00000015015	rbm17	100	92.443	ENSMZEG00005015179	rbm17	100	92.443	Maylandia_zebra
ENSSDUG00000015015	rbm17	100	82.100	ENSMGAG00000003981	RBM17	100	81.579	Meleagris_gallopavo
ENSSDUG00000015015	rbm17	100	81.490	ENSMAUG00000019247	Rbm17	100	81.490	Mesocricetus_auratus
ENSSDUG00000015015	rbm17	100	75.476	ENSMICG00000041489	-	100	75.476	Microcebus_murinus
ENSSDUG00000015015	rbm17	100	81.490	ENSMICG00000003976	-	100	81.490	Microcebus_murinus
ENSSDUG00000015015	rbm17	92	66.304	ENSMOCG00000014517	-	99	65.285	Microtus_ochrogaster
ENSSDUG00000015015	rbm17	100	81.490	ENSMOCG00000011847	Rbm17	100	81.490	Microtus_ochrogaster
ENSSDUG00000015015	rbm17	100	86.064	ENSMMOG00000010264	rbm17	100	85.612	Mola_mola
ENSSDUG00000015015	rbm17	100	81.840	ENSMODG00000016648	RBM17	100	81.840	Monodelphis_domestica
ENSSDUG00000015015	rbm17	100	92.010	ENSMALG00000010597	rbm17	100	95.103	Monopterus_albus
ENSSDUG00000015015	rbm17	100	81.490	MGP_CAROLIEiJ_G0023173	Rbm17	100	81.490	Mus_caroli
ENSSDUG00000015015	rbm17	100	81.490	ENSMUSG00000037197	Rbm17	100	81.490	Mus_musculus
ENSSDUG00000015015	rbm17	100	81.971	MGP_PahariEiJ_G0019233	Rbm17	100	81.971	Mus_pahari
ENSSDUG00000015015	rbm17	100	81.490	MGP_SPRETEiJ_G0024091	Rbm17	100	81.490	Mus_spretus
ENSSDUG00000015015	rbm17	86	80.056	ENSMPUG00000016359	RBM17	96	80.056	Mustela_putorius_furo
ENSSDUG00000015015	rbm17	100	79.616	ENSMLUG00000002302	-	100	79.616	Myotis_lucifugus
ENSSDUG00000015015	rbm17	100	77.295	ENSMLUG00000025709	-	100	77.295	Myotis_lucifugus
ENSSDUG00000015015	rbm17	100	81.490	ENSNGAG00000000741	Rbm17	100	81.490	Nannospalax_galili
ENSSDUG00000015015	rbm17	100	59.536	ENSNGAG00000000663	-	100	58.505	Nannospalax_galili
ENSSDUG00000015015	rbm17	100	89.406	ENSNBRG00000018148	rbm17	100	91.473	Neolamprologus_brichardi
ENSSDUG00000015015	rbm17	100	81.840	ENSNLEG00000033350	RBM17	97	87.500	Nomascus_leucogenys
ENSSDUG00000015015	rbm17	100	76.755	ENSMEUG00000011347	RBM17	100	76.755	Notamacropus_eugenii
ENSSDUG00000015015	rbm17	100	71.429	ENSOPRG00000002993	RBM17	100	71.429	Ochotona_princeps
ENSSDUG00000015015	rbm17	97	63.307	ENSODEG00000007286	-	99	63.307	Octodon_degus
ENSSDUG00000015015	rbm17	100	81.055	ENSODEG00000004393	RBM17	100	81.055	Octodon_degus
ENSSDUG00000015015	rbm17	100	93.932	ENSONIG00000011838	rbm17	100	92.961	Oreochromis_niloticus
ENSSDUG00000015015	rbm17	100	80.630	ENSOANG00000015455	RBM17	100	80.387	Ornithorhynchus_anatinus
ENSSDUG00000015015	rbm17	100	90.909	ENSORLG00000028798	rbm17	100	91.414	Oryzias_latipes
ENSSDUG00000015015	rbm17	100	93.023	ENSORLG00020004593	rbm17	100	93.023	Oryzias_latipes_hni
ENSSDUG00000015015	rbm17	100	91.748	ENSORLG00015000033	rbm17	100	91.748	Oryzias_latipes_hsok
ENSSDUG00000015015	rbm17	100	90.909	ENSOMEG00000012060	rbm17	100	93.125	Oryzias_melastigma
ENSSDUG00000015015	rbm17	100	81.731	ENSOGAG00000015687	RBM17	100	81.731	Otolemur_garnettii
ENSSDUG00000015015	rbm17	100	82.082	ENSOARG00000012975	RBM17	100	82.082	Ovis_aries
ENSSDUG00000015015	rbm17	100	81.840	ENSPPAG00000032347	RBM17	97	87.500	Pan_paniscus
ENSSDUG00000015015	rbm17	100	82.082	ENSPPRG00000010706	RBM17	100	82.082	Panthera_pardus
ENSSDUG00000015015	rbm17	100	82.082	ENSPTIG00000007596	RBM17	100	82.082	Panthera_tigris_altaica
ENSSDUG00000015015	rbm17	100	81.840	ENSPTRG00000002265	RBM17	97	87.500	Pan_troglodytes
ENSSDUG00000015015	rbm17	100	83.247	ENSPANG00000023425	RBM17	97	87.500	Papio_anubis
ENSSDUG00000015015	rbm17	100	81.007	ENSPKIG00000025526	rbm17	100	79.902	Paramormyrops_kingsleyae
ENSSDUG00000015015	rbm17	100	80.612	ENSPKIG00000005048	-	100	82.653	Paramormyrops_kingsleyae
ENSSDUG00000015015	rbm17	100	81.250	ENSPSIG00000012332	RBM17	100	80.964	Pelodiscus_sinensis
ENSSDUG00000015015	rbm17	100	87.000	ENSPMGG00000007980	rbm17	100	86.750	Periophthalmus_magnuspinnatus
ENSSDUG00000015015	rbm17	100	81.490	ENSPEMG00000014320	Rbm17	100	81.490	Peromyscus_maniculatus_bairdii
ENSSDUG00000015015	rbm17	100	81.687	ENSPCIG00000019260	-	100	81.687	Phascolarctos_cinereus
ENSSDUG00000015015	rbm17	100	89.977	ENSPFOG00000013271	rbm17	100	89.977	Poecilia_formosa
ENSSDUG00000015015	rbm17	100	90.537	ENSPLAG00000004455	rbm17	100	90.979	Poecilia_latipinna
ENSSDUG00000015015	rbm17	100	90.777	ENSPMEG00000014864	rbm17	100	90.777	Poecilia_mexicana
ENSSDUG00000015015	rbm17	100	90.306	ENSPREG00000015589	rbm17	100	90.306	Poecilia_reticulata
ENSSDUG00000015015	rbm17	99	61.858	ENSPPYG00000019881	-	99	61.858	Pongo_abelii
ENSSDUG00000015015	rbm17	100	81.840	ENSPPYG00000002067	RBM17	100	81.840	Pongo_abelii
ENSSDUG00000015015	rbm17	81	58.806	ENSPPYG00000019042	-	100	58.806	Pongo_abelii
ENSSDUG00000015015	rbm17	100	74.576	ENSPCAG00000016879	RBM17	100	74.576	Procavia_capensis
ENSSDUG00000015015	rbm17	100	82.082	ENSPCOG00000027881	RBM17	100	82.082	Propithecus_coquereli
ENSSDUG00000015015	rbm17	100	73.123	ENSPVAG00000015499	RBM17	100	73.123	Pteropus_vampyrus
ENSSDUG00000015015	rbm17	100	86.563	ENSPNYG00000015274	rbm17	100	85.641	Pundamilia_nyererei
ENSSDUG00000015015	rbm17	100	84.455	ENSPNAG00000030046	rbm17	100	85.354	Pygocentrus_nattereri
ENSSDUG00000015015	rbm17	100	81.490	ENSRNOG00000018767	Rbm17	100	81.490	Rattus_norvegicus
ENSSDUG00000015015	rbm17	100	81.840	ENSRBIG00000043727	RBM17	97	87.500	Rhinopithecus_bieti
ENSSDUG00000015015	rbm17	100	83.247	ENSRROG00000044142	RBM17	97	87.500	Rhinopithecus_roxellana
ENSSDUG00000015015	rbm17	100	72.881	ENSSBOG00000023653	-	100	72.076	Saimiri_boliviensis_boliviensis
ENSSDUG00000015015	rbm17	100	82.082	ENSSBOG00000031661	-	100	82.082	Saimiri_boliviensis_boliviensis
ENSSDUG00000015015	rbm17	100	81.840	ENSSHAG00000012480	-	100	81.840	Sarcophilus_harrisii
ENSSDUG00000015015	rbm17	100	83.333	ENSSFOG00015009892	rbm17	100	81.710	Scleropages_formosus
ENSSDUG00000015015	rbm17	100	90.531	ENSSMAG00000012368	rbm17	100	90.531	Scophthalmus_maximus
ENSSDUG00000015015	rbm17	100	100.000	ENSSLDG00000014486	rbm17	100	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000015015	rbm17	99	82.039	ENSSPUG00000001036	RBM17	99	81.752	Sphenodon_punctatus
ENSSDUG00000015015	rbm17	100	95.388	ENSSPAG00000002338	rbm17	100	95.388	Stegastes_partitus
ENSSDUG00000015015	rbm17	100	81.840	ENSSSCG00000011134	RBM17	100	81.840	Sus_scrofa
ENSSDUG00000015015	rbm17	100	81.731	ENSTGUG00000002013	RBM17	100	81.446	Taeniopygia_guttata
ENSSDUG00000015015	rbm17	100	90.534	ENSTRUG00000010698	rbm17	100	89.563	Takifugu_rubripes
ENSSDUG00000015015	rbm17	100	88.889	ENSTNIG00000006892	rbm17	100	87.112	Tetraodon_nigroviridis
ENSSDUG00000015015	rbm17	100	62.222	ENSTBEG00000014686	RBM17	100	64.619	Tupaia_belangeri
ENSSDUG00000015015	rbm17	90	81.183	ENSTTRG00000001344	RBM17	100	81.183	Tursiops_truncatus
ENSSDUG00000015015	rbm17	100	80.303	ENSUAMG00000009499	RBM17	100	81.156	Ursus_americanus
ENSSDUG00000015015	rbm17	100	83.505	ENSUMAG00000012237	RBM17	100	83.505	Ursus_maritimus
ENSSDUG00000015015	rbm17	100	71.186	ENSVPAG00000005497	RBM17	100	71.186	Vicugna_pacos
ENSSDUG00000015015	rbm17	100	81.122	ENSVVUG00000006780	RBM17	100	82.234	Vulpes_vulpes
ENSSDUG00000015015	rbm17	99	78.832	ENSXETG00000018123	rbm17	100	77.913	Xenopus_tropicalis
ENSSDUG00000015015	rbm17	100	90.049	ENSXMAG00000008674	rbm17	100	89.320	Xiphophorus_maculatus