EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000015159 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 3514 bases
Position: chrBDQW01000312.1:852903-856416
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000020843	zf-C2H2	PF00096.26	2.2e-40	1	7
ENSSDUP00000020843	zf-C2H2	PF00096.26	2.2e-40	2	7
ENSSDUP00000020843	zf-C2H2	PF00096.26	2.2e-40	3	7
ENSSDUP00000020843	zf-C2H2	PF00096.26	2.2e-40	4	7
ENSSDUP00000020843	zf-C2H2	PF00096.26	2.2e-40	5	7
ENSSDUP00000020843	zf-C2H2	PF00096.26	2.2e-40	6	7
ENSSDUP00000020843	zf-C2H2	PF00096.26	2.2e-40	7	7
ENSSDUP00000020843	zf-met	PF12874.7	6.7e-16	1	3
ENSSDUP00000020843	zf-met	PF12874.7	6.7e-16	2	3
ENSSDUP00000020843	zf-met	PF12874.7	6.7e-16	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000021219	-	1314	-	ENSSDUP00000020843	437 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000015159's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000015159's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000015159	-	85	40.828	ENSSDUG00000002174	-	71	40.678
ENSSDUG00000015159	-	89	33.875	ENSSDUG00000003003	znf319b	88	37.073
ENSSDUG00000015159	-	89	49.123	ENSSDUG00000022035	-	65	49.123
ENSSDUG00000015159	-	83	38.235	ENSSDUG00000018060	snai2	67	38.235
ENSSDUG00000015159	-	83	38.209	ENSSDUG00000022412	znf648	56	38.462
ENSSDUG00000015159	-	90	45.161	ENSSDUG00000000748	sall1b	61	45.161
ENSSDUG00000015159	-	99	51.971	ENSSDUG00000009601	-	99	50.284
ENSSDUG00000015159	-	99	50.459	ENSSDUG00000000786	-	91	57.831
ENSSDUG00000015159	-	99	54.839	ENSSDUG00000009577	-	75	49.105
ENSSDUG00000015159	-	87	41.935	ENSSDUG00000000705	-	73	41.935
ENSSDUG00000015159	-	86	42.353	ENSSDUG00000016450	-	73	37.755
ENSSDUG00000015159	-	93	43.636	ENSSDUG00000002195	-	94	47.674
ENSSDUG00000015159	-	95	48.971	ENSSDUG00000006426	-	99	48.971
ENSSDUG00000015159	-	97	41.667	ENSSDUG00000020805	-	91	41.667
ENSSDUG00000015159	-	86	40.171	ENSSDUG00000000871	-	92	40.171
ENSSDUG00000015159	-	87	43.721	ENSSDUG00000016734	-	74	43.721
ENSSDUG00000015159	-	95	50.588	ENSSDUG00000015191	-	98	48.518
ENSSDUG00000015159	-	81	48.085	ENSSDUG00000023764	-	95	47.009
ENSSDUG00000015159	-	99	49.012	ENSSDUG00000015254	-	90	57.031
ENSSDUG00000015159	-	99	48.276	ENSSDUG00000011170	znf236	59	48.276
ENSSDUG00000015159	-	99	61.111	ENSSDUG00000009439	-	99	55.066
ENSSDUG00000015159	-	75	35.570	ENSSDUG00000017250	-	75	38.961
ENSSDUG00000015159	-	81	43.860	ENSSDUG00000011604	gfi1b	54	43.860
ENSSDUG00000015159	-	81	45.333	ENSSDUG00000004089	-	96	43.137
ENSSDUG00000015159	-	82	42.138	ENSSDUG00000012926	-	76	42.138
ENSSDUG00000015159	-	95	53.266	ENSSDUG00000009553	-	73	48.120
ENSSDUG00000015159	-	90	33.529	ENSSDUG00000019932	ZNF319	90	34.746
ENSSDUG00000015159	-	86	54.317	ENSSDUG00000015204	-	99	54.317
ENSSDUG00000015159	-	92	47.619	ENSSDUG00000020774	-	63	47.619
ENSSDUG00000015159	-	99	58.333	ENSSDUG00000008682	-	82	58.333
ENSSDUG00000015159	-	94	47.191	ENSSDUG00000004835	-	81	45.026
ENSSDUG00000015159	-	92	49.010	ENSSDUG00000019911	-	58	49.010
ENSSDUG00000015159	-	93	35.882	ENSSDUG00000000695	-	79	35.882
ENSSDUG00000015159	-	95	47.000	ENSSDUG00000015622	-	90	46.561
ENSSDUG00000015159	-	93	46.012	ENSSDUG00000013904	-	91	46.012
ENSSDUG00000015159	-	91	55.000	ENSSDUG00000023765	-	99	55.000
ENSSDUG00000015159	-	90	47.170	ENSSDUG00000006808	-	84	47.170
ENSSDUG00000015159	-	89	44.724	ENSSDUG00000000799	-	75	44.724
ENSSDUG00000015159	-	82	42.857	ENSSDUG00000022914	-	57	42.857
ENSSDUG00000015159	-	99	53.488	ENSSDUG00000009563	-	88	45.652
ENSSDUG00000015159	-	84	35.714	ENSSDUG00000001637	scrt2	56	35.714
ENSSDUG00000015159	-	90	52.590	ENSSDUG00000005323	-	93	50.370
ENSSDUG00000015159	-	84	37.984	ENSSDUG00000020397	prdm5	81	37.984
ENSSDUG00000015159	-	87	56.364	ENSSDUG00000009425	-	69	52.239
ENSSDUG00000015159	-	84	50.318	ENSSDUG00000001263	-	98	50.318
ENSSDUG00000015159	-	94	46.032	ENSSDUG00000022162	-	73	46.032
ENSSDUG00000015159	-	95	46.939	ENSSDUG00000004657	sall4	57	46.939
ENSSDUG00000015159	-	87	56.044	ENSSDUG00000004650	-	98	56.044
ENSSDUG00000015159	-	99	53.552	ENSSDUG00000009534	-	74	53.552
ENSSDUG00000015159	-	88	38.235	ENSSDUG00000006740	-	85	36.196
ENSSDUG00000015159	-	88	51.111	ENSSDUG00000000946	-	98	45.548
ENSSDUG00000015159	-	99	53.134	ENSSDUG00000007336	-	94	53.134
ENSSDUG00000015159	-	81	41.121	ENSSDUG00000019933	snai1a	58	41.121
ENSSDUG00000015159	-	89	50.000	ENSSDUG00000000838	-	56	50.000
ENSSDUG00000015159	-	89	37.562	ENSSDUG00000006463	-	89	38.268
ENSSDUG00000015159	-	85	45.055	ENSSDUG00000011244	-	80	46.203
ENSSDUG00000015159	-	86	37.069	ENSSDUG00000002675	znf646	88	30.597
ENSSDUG00000015159	-	94	36.296	ENSSDUG00000007752	scrt1b	80	36.296
ENSSDUG00000015159	-	87	45.091	ENSSDUG00000015013	-	65	45.091
ENSSDUG00000015159	-	86	42.678	ENSSDUG00000020595	-	87	41.016
ENSSDUG00000015159	-	93	30.882	ENSSDUG00000014574	znf526	58	32.143
ENSSDUG00000015159	-	92	45.421	ENSSDUG00000020810	-	81	44.178
ENSSDUG00000015159	-	93	38.021	ENSSDUG00000004892	-	98	35.252
ENSSDUG00000015159	-	99	50.679	ENSSDUG00000009421	-	97	50.254
ENSSDUG00000015159	-	82	42.692	ENSSDUG00000002488	-	64	38.281
ENSSDUG00000015159	-	95	50.671	ENSSDUG00000008943	-	94	50.238
ENSSDUG00000015159	-	96	52.830	ENSSDUG00000010584	sall3b	50	52.830
ENSSDUG00000015159	-	84	43.651	ENSSDUG00000000889	-	74	43.651
ENSSDUG00000015159	-	92	45.228	ENSSDUG00000020788	-	82	45.228
ENSSDUG00000015159	-	92	41.509	ENSSDUG00000020783	-	62	43.684
ENSSDUG00000015159	-	85	46.377	ENSSDUG00000008329	-	85	46.377
ENSSDUG00000015159	-	81	58.824	ENSSDUG00000004867	-	96	58.824
ENSSDUG00000015159	-	81	36.800	ENSSDUG00000013335	-	86	36.066
ENSSDUG00000015159	-	100	51.673	ENSSDUG00000005401	-	92	56.452
ENSSDUG00000015159	-	89	55.206	ENSSDUG00000015182	-	79	54.481

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000015159	-	86	52.830	ENSAPOG00000008802	-	99	54.255	Acanthochromis_polyacanthus
ENSSDUG00000015159	-	97	51.156	ENSAPOG00000006303	-	90	63.415	Acanthochromis_polyacanthus
ENSSDUG00000015159	-	89	40.111	ENSAPOG00000019960	-	94	38.062	Acanthochromis_polyacanthus
ENSSDUG00000015159	-	90	50.595	ENSACIG00000022658	-	95	49.117	Amphilophus_citrinellus
ENSSDUG00000015159	-	99	47.333	ENSACIG00000004745	-	99	46.154	Amphilophus_citrinellus
ENSSDUG00000015159	-	95	51.829	ENSAOCG00000013130	-	88	51.829	Amphiprion_ocellaris
ENSSDUG00000015159	-	91	52.157	ENSAOCG00000013710	-	98	52.157	Amphiprion_ocellaris
ENSSDUG00000015159	-	100	47.541	ENSAOCG00000014165	-	92	46.067	Amphiprion_ocellaris
ENSSDUG00000015159	-	95	51.829	ENSAPEG00000009383	-	86	54.783	Amphiprion_percula
ENSSDUG00000015159	-	99	54.054	ENSAPEG00000006650	-	91	57.983	Amphiprion_percula
ENSSDUG00000015159	-	90	48.311	ENSATEG00000015695	-	91	48.311	Anabas_testudineus
ENSSDUG00000015159	-	90	48.311	ENSATEG00000017618	-	91	48.311	Anabas_testudineus
ENSSDUG00000015159	-	95	51.479	ENSACLG00000018746	-	89	50.909	Astatotilapia_calliptera
ENSSDUG00000015159	-	93	52.838	ENSACLG00000023513	-	84	52.838	Astatotilapia_calliptera
ENSSDUG00000015159	-	98	48.485	ENSACLG00000021343	-	97	53.357	Astatotilapia_calliptera
ENSSDUG00000015159	-	82	40.181	ENSACLG00000019291	-	89	40.181	Astatotilapia_calliptera
ENSSDUG00000015159	-	95	51.724	ENSACLG00000026703	-	82	51.724	Astatotilapia_calliptera
ENSSDUG00000015159	-	82	44.658	ENSAMXG00000042275	-	92	45.326	Astyanax_mexicanus
ENSSDUG00000015159	-	84	44.628	ENSAMXG00000043302	-	74	44.628	Astyanax_mexicanus
ENSSDUG00000015159	-	81	49.831	ENSAMXG00000041975	-	91	45.714	Astyanax_mexicanus
ENSSDUG00000015159	-	82	45.907	ENSAMXG00000039408	-	90	45.907	Astyanax_mexicanus
ENSSDUG00000015159	-	81	55.405	ENSAMXG00000035920	-	89	55.405	Astyanax_mexicanus
ENSSDUG00000015159	-	93	44.262	ENSBTAG00000016191	ZNF32	89	44.262	Bos_taurus
ENSSDUG00000015159	-	93	44.262	ENSCHIG00000021099	ZNF32	89	44.262	Capra_hircus
ENSSDUG00000015159	-	84	41.772	ENSCSAVG00000001808	-	100	42.085	Ciona_savignyi
ENSSDUG00000015159	-	95	44.800	ENSCVAG00000021225	-	96	58.621	Cyprinodon_variegatus
ENSSDUG00000015159	-	95	47.101	ENSDARG00000099986	si:ch211-207i20.2	82	47.101	Danio_rerio
ENSSDUG00000015159	-	92	45.596	ENSDNOG00000035046	ZNF32	89	43.836	Dasypus_novemcinctus
ENSSDUG00000015159	-	93	45.596	ENSEASG00005006910	ZNF32	89	44.262	Equus_asinus_asinus
ENSSDUG00000015159	-	93	45.596	ENSECAG00000023676	ZNF32	89	44.262	Equus_caballus
ENSSDUG00000015159	-	85	43.385	ENSELUG00000021229	-	92	42.769	Esox_lucius
ENSSDUG00000015159	-	95	44.118	ENSFHEG00000000678	-	89	43.750	Fundulus_heteroclitus
ENSSDUG00000015159	-	96	48.805	ENSFHEG00000018063	-	95	43.802	Fundulus_heteroclitus
ENSSDUG00000015159	-	92	45.297	ENSGAFG00000020499	-	75	45.297	Gambusia_affinis
ENSSDUG00000015159	-	93	45.818	ENSGACG00000010352	si:ch211-207i20.2	72	45.818	Gasterosteus_aculeatus
ENSSDUG00000015159	-	86	55.895	ENSHBUG00000021003	-	95	55.895	Haplochromis_burtoni
ENSSDUG00000015159	-	93	38.199	ENSHBUG00000013296	-	98	36.686	Haplochromis_burtoni
ENSSDUG00000015159	-	98	46.453	ENSHBUG00000015166	-	99	46.453	Haplochromis_burtoni
ENSSDUG00000015159	-	89	46.275	ENSIPUG00000022741	-	94	40.678	Ictalurus_punctatus
ENSSDUG00000015159	-	86	45.736	ENSIPUG00000023761	-	71	45.736	Ictalurus_punctatus
ENSSDUG00000015159	-	82	53.030	ENSIPUG00000002655	-	98	55.263	Ictalurus_punctatus
ENSSDUG00000015159	-	81	47.619	ENSIPUG00000021998	-	91	47.799	Ictalurus_punctatus
ENSSDUG00000015159	-	87	46.667	ENSIPUG00000005733	-	73	46.667	Ictalurus_punctatus
ENSSDUG00000015159	-	81	52.941	ENSLBEG00000020128	-	99	49.756	Labrus_bergylta
ENSSDUG00000015159	-	95	46.012	ENSMAMG00000014734	-	82	46.012	Mastacembelus_armatus
ENSSDUG00000015159	-	96	48.330	ENSMZEG00005021052	-	91	50.000	Maylandia_zebra
ENSSDUG00000015159	-	95	51.479	ENSMZEG00005003336	-	89	50.909	Maylandia_zebra
ENSSDUG00000015159	-	95	48.454	ENSMZEG00005025343	-	93	47.887	Maylandia_zebra
ENSSDUG00000015159	-	82	52.549	ENSMZEG00005007262	-	99	50.962	Maylandia_zebra
ENSSDUG00000015159	-	92	38.150	ENSMZEG00005020162	-	80	38.150	Maylandia_zebra
ENSSDUG00000015159	-	99	46.237	ENSMZEG00005019918	-	93	53.202	Maylandia_zebra
ENSSDUG00000015159	-	89	36.875	ENSMZEG00005020156	-	81	36.769	Maylandia_zebra
ENSSDUG00000015159	-	96	49.246	ENSMZEG00005026082	-	80	53.521	Maylandia_zebra
ENSSDUG00000015159	-	95	39.057	ENSMZEG00005014592	-	90	39.057	Maylandia_zebra
ENSSDUG00000015159	-	95	39.662	ENSMZEG00005012715	-	74	39.662	Maylandia_zebra
ENSSDUG00000015159	-	92	50.179	ENSMMOG00000004460	-	87	50.508	Mola_mola
ENSSDUG00000015159	-	90	60.204	ENSMMOG00000010703	-	99	53.333	Mola_mola
ENSSDUG00000015159	-	86	51.429	ENSMMOG00000006131	-	87	51.429	Mola_mola
ENSSDUG00000015159	-	95	48.718	ENSMALG00000004216	-	86	52.764	Monopterus_albus
ENSSDUG00000015159	-	99	48.241	ENSMALG00000015655	-	100	49.145	Monopterus_albus
ENSSDUG00000015159	-	95	50.352	ENSMALG00000007051	-	96	52.244	Monopterus_albus
ENSSDUG00000015159	-	81	48.276	MGP_PahariEiJ_G0022533	Zfp637	79	45.902	Mus_pahari
ENSSDUG00000015159	-	81	48.276	MGP_SPRETEiJ_G0029809	Zfp637	79	45.902	Mus_spretus
ENSSDUG00000015159	-	93	45.902	ENSNGAG00000020281	Zfp637	89	45.902	Nannospalax_galili
ENSSDUG00000015159	-	93	39.344	ENSNBRG00000005805	-	94	41.154	Neolamprologus_brichardi
ENSSDUG00000015159	-	86	41.736	ENSNBRG00000005849	-	90	41.633	Neolamprologus_brichardi
ENSSDUG00000015159	-	95	36.573	ENSNBRG00000016564	-	87	36.573	Neolamprologus_brichardi
ENSSDUG00000015159	-	81	44.000	ENSNBRG00000003000	-	93	44.554	Neolamprologus_brichardi
ENSSDUG00000015159	-	88	43.333	ENSNBRG00000005796	-	86	37.069	Neolamprologus_brichardi
ENSSDUG00000015159	-	95	48.458	ENSNBRG00000000523	-	79	48.857	Neolamprologus_brichardi
ENSSDUG00000015159	-	93	39.062	ENSONIG00000005693	-	96	38.028	Oreochromis_niloticus
ENSSDUG00000015159	-	81	40.599	ENSONIG00000015514	-	95	40.947	Oreochromis_niloticus
ENSSDUG00000015159	-	82	39.117	ENSONIG00000015552	-	91	37.535	Oreochromis_niloticus
ENSSDUG00000015159	-	93	45.078	ENSOARG00000002999	ZNF32	89	44.262	Ovis_aries
ENSSDUG00000015159	-	86	46.640	ENSPLAG00000015973	-	100	46.640	Poecilia_latipinna
ENSSDUG00000015159	-	96	48.534	ENSPMEG00000016458	-	92	50.360	Poecilia_mexicana
ENSSDUG00000015159	-	95	52.308	ENSPMEG00000006726	-	100	46.411	Poecilia_mexicana
ENSSDUG00000015159	-	93	49.123	ENSPREG00000010437	-	85	49.123	Poecilia_reticulata
ENSSDUG00000015159	-	87	44.377	ENSPCAG00000005270	-	97	44.377	Procavia_capensis
ENSSDUG00000015159	-	81	46.742	ENSPVAG00000009430	-	72	47.195	Pteropus_vampyrus
ENSSDUG00000015159	-	95	46.275	ENSPNYG00000002684	-	99	50.581	Pundamilia_nyererei
ENSSDUG00000015159	-	84	51.965	ENSPNYG00000007597	-	98	48.235	Pundamilia_nyererei
ENSSDUG00000015159	-	83	45.378	ENSPNAG00000029997	-	87	45.378	Pygocentrus_nattereri
ENSSDUG00000015159	-	98	40.164	ENSSFOG00015015878	-	96	41.379	Scleropages_formosus
ENSSDUG00000015159	-	89	46.888	ENSSLDG00000012036	-	93	54.305	Seriola_lalandi_dorsalis
ENSSDUG00000015159	-	95	50.833	ENSSLDG00000018273	-	92	50.833	Seriola_lalandi_dorsalis
ENSSDUG00000015159	-	95	51.381	ENSSLDG00000020675	-	94	51.381	Seriola_lalandi_dorsalis
ENSSDUG00000015159	-	81	41.954	ENSSARG00000000532	-	85	42.730	Sorex_araneus
ENSSDUG00000015159	-	99	49.741	ENSXCOG00000008116	-	99	51.103	Xiphophorus_couchianus