EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000015254 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 10918 bases
Position: chrBDQW01000312.1:885782-896699
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000021026	zf-C2H2	PF00096.26	2e-51	1	10
ENSSDUP00000021026	zf-C2H2	PF00096.26	2e-51	2	10
ENSSDUP00000021026	zf-C2H2	PF00096.26	2e-51	3	10
ENSSDUP00000021026	zf-C2H2	PF00096.26	2e-51	4	10
ENSSDUP00000021026	zf-C2H2	PF00096.26	2e-51	5	10
ENSSDUP00000021026	zf-C2H2	PF00096.26	2e-51	6	10
ENSSDUP00000021026	zf-C2H2	PF00096.26	2e-51	7	10
ENSSDUP00000021026	zf-C2H2	PF00096.26	2e-51	8	10
ENSSDUP00000021026	zf-C2H2	PF00096.26	2e-51	9	10
ENSSDUP00000021026	zf-C2H2	PF00096.26	2e-51	10	10
ENSSDUP00000021061	zf-C2H2	PF00096.26	2.6e-51	1	10
ENSSDUP00000021061	zf-C2H2	PF00096.26	2.6e-51	2	10
ENSSDUP00000021061	zf-C2H2	PF00096.26	2.6e-51	3	10
ENSSDUP00000021061	zf-C2H2	PF00096.26	2.6e-51	4	10
ENSSDUP00000021061	zf-C2H2	PF00096.26	2.6e-51	5	10
ENSSDUP00000021061	zf-C2H2	PF00096.26	2.6e-51	6	10
ENSSDUP00000021061	zf-C2H2	PF00096.26	2.6e-51	7	10
ENSSDUP00000021061	zf-C2H2	PF00096.26	2.6e-51	8	10
ENSSDUP00000021061	zf-C2H2	PF00096.26	2.6e-51	9	10
ENSSDUP00000021061	zf-C2H2	PF00096.26	2.6e-51	10	10
ENSSDUP00000021117	zf-C2H2	PF00096.26	1.1e-22	1	4
ENSSDUP00000021117	zf-C2H2	PF00096.26	1.1e-22	2	4
ENSSDUP00000021117	zf-C2H2	PF00096.26	1.1e-22	3	4
ENSSDUP00000021117	zf-C2H2	PF00096.26	1.1e-22	4	4
ENSSDUP00000021026	zf-met	PF12874.7	3.4e-14	1	2
ENSSDUP00000021026	zf-met	PF12874.7	3.4e-14	2	2
ENSSDUP00000021061	zf-met	PF12874.7	4.3e-14	1	2
ENSSDUP00000021061	zf-met	PF12874.7	4.3e-14	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000021498	-	492	-	ENSSDUP00000021117	163 (aa)	-	-
ENSSDUT00000021407	-	1110	-	ENSSDUP00000021026	369 (aa)	-	-
ENSSDUT00000021442	-	1131	-	ENSSDUP00000021061	376 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000015254's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000015254's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000015254	-	88	42.453	ENSSDUG00000000889	-	80	38.202
ENSSDUG00000015254	-	90	51.282	ENSSDUG00000000748	sall1b	63	43.939
ENSSDUG00000015254	-	97	57.576	ENSSDUG00000005401	-	94	59.603
ENSSDUG00000015254	-	89	40.708	ENSSDUG00000017250	-	53	40.708
ENSSDUG00000015254	-	92	59.459	ENSSDUG00000004650	-	98	59.677
ENSSDUG00000015254	-	94	46.269	ENSSDUG00000002195	-	86	55.882
ENSSDUG00000015254	-	97	59.091	ENSSDUG00000009577	-	80	59.091
ENSSDUG00000015254	-	91	48.837	ENSSDUG00000002488	-	58	48.837
ENSSDUG00000015254	-	98	60.938	ENSSDUG00000006426	-	99	60.938
ENSSDUG00000015254	-	96	36.396	ENSSDUG00000019932	ZNF319	81	47.945
ENSSDUG00000015254	-	89	48.333	ENSSDUG00000015013	-	60	48.333
ENSSDUG00000015254	-	97	39.850	ENSSDUG00000000695	-	76	52.344
ENSSDUG00000015254	-	96	60.455	ENSSDUG00000009439	-	99	57.576
ENSSDUG00000015254	-	94	47.059	ENSSDUG00000020805	-	79	47.059
ENSSDUG00000015254	-	90	42.857	ENSSDUG00000020397	prdm5	69	42.857
ENSSDUG00000015254	-	95	47.170	ENSSDUG00000006808	-	81	47.170
ENSSDUG00000015254	-	85	50.467	ENSSDUG00000008329	-	85	35.398
ENSSDUG00000015254	-	91	50.579	ENSSDUG00000005323	-	95	50.579
ENSSDUG00000015254	-	93	47.101	ENSSDUG00000000799	-	74	47.101
ENSSDUG00000015254	-	82	46.939	ENSSDUG00000014540	znf341	54	30.058
ENSSDUG00000015254	-	88	48.980	ENSSDUG00000023764	-	95	48.980
ENSSDUG00000015254	-	96	53.731	ENSSDUG00000009553	-	73	53.731
ENSSDUG00000015254	-	88	33.129	ENSSDUG00000010305	-	54	35.616
ENSSDUG00000015254	-	98	57.143	ENSSDUG00000008943	-	99	58.140
ENSSDUG00000015254	-	85	47.706	ENSSDUG00000006740	-	79	39.869
ENSSDUG00000015254	-	94	48.837	ENSSDUG00000011170	znf236	67	37.391
ENSSDUG00000015254	-	89	41.270	ENSSDUG00000007752	scrt1b	55	41.270
ENSSDUG00000015254	-	92	61.176	ENSSDUG00000004867	-	96	61.176
ENSSDUG00000015254	-	92	46.212	ENSSDUG00000011244	-	79	46.212
ENSSDUG00000015254	-	84	47.692	ENSSDUG00000016734	-	60	47.692
ENSSDUG00000015254	-	86	41.045	ENSSDUG00000018060	snai2	51	41.045
ENSSDUG00000015254	-	90	57.031	ENSSDUG00000015159	-	99	49.012
ENSSDUG00000015254	-	98	42.400	ENSSDUG00000004089	-	99	52.941
ENSSDUG00000015254	-	90	34.711	ENSSDUG00000003003	znf319b	86	34.711
ENSSDUG00000015254	-	92	57.576	ENSSDUG00000009563	-	94	57.576
ENSSDUG00000015254	-	94	43.609	ENSSDUG00000022412	znf648	62	41.209
ENSSDUG00000015254	-	96	45.600	ENSSDUG00000013904	-	91	45.600
ENSSDUG00000015254	-	88	57.143	ENSSDUG00000004835	-	69	57.143
ENSSDUG00000015254	-	90	46.591	ENSSDUG00000022914	-	51	46.591
ENSSDUG00000015254	-	93	60.741	ENSSDUG00000009534	-	76	60.741
ENSSDUG00000015254	-	90	44.444	ENSSDUG00000014574	znf526	63	33.628
ENSSDUG00000015254	-	98	43.200	ENSSDUG00000020783	-	50	44.495
ENSSDUG00000015254	-	96	43.939	ENSSDUG00000006463	-	88	43.939
ENSSDUG00000015254	-	92	47.644	ENSSDUG00000022170	zbtb49	50	45.312
ENSSDUG00000015254	-	86	38.849	ENSSDUG00000001637	scrt2	51	39.683
ENSSDUG00000015254	-	98	56.489	ENSSDUG00000009601	-	99	56.489
ENSSDUG00000015254	-	93	49.701	ENSSDUG00000022035	-	51	49.701
ENSSDUG00000015254	-	89	41.781	ENSSDUG00000012926	-	83	41.781
ENSSDUG00000015254	-	90	50.360	ENSSDUG00000001263	-	98	50.360
ENSSDUG00000015254	-	97	46.377	ENSSDUG00000000946	-	99	51.389
ENSSDUG00000015254	-	96	41.060	ENSSDUG00000016450	-	67	37.209
ENSSDUG00000015254	-	89	49.180	ENSSDUG00000020774	-	75	45.205
ENSSDUG00000015254	-	83	47.967	ENSSDUG00000002174	-	67	47.967
ENSSDUG00000015254	-	96	55.665	ENSSDUG00000009421	-	97	54.749
ENSSDUG00000015254	-	96	60.947	ENSSDUG00000009425	-	72	60.947
ENSSDUG00000015254	-	87	49.296	ENSSDUG00000020810	-	65	49.296
ENSSDUG00000015254	-	89	51.786	ENSSDUG00000023765	-	67	57.576
ENSSDUG00000015254	-	92	57.831	ENSSDUG00000000786	-	91	57.831
ENSSDUG00000015254	-	90	42.063	ENSSDUG00000011604	gfi1b	54	41.875
ENSSDUG00000015254	-	89	38.739	ENSSDUG00000000871	-	91	38.739
ENSSDUG00000015254	-	96	57.576	ENSSDUG00000015191	-	99	58.273
ENSSDUG00000015254	-	97	60.150	ENSSDUG00000007336	-	97	60.150
ENSSDUG00000015254	-	89	43.548	ENSSDUG00000004892	-	94	33.728
ENSSDUG00000015254	-	91	47.581	ENSSDUG00000000705	-	62	47.581
ENSSDUG00000015254	-	89	44.186	ENSSDUG00000022162	-	50	44.186
ENSSDUG00000015254	-	96	39.216	ENSSDUG00000001918	znf366	50	39.216
ENSSDUG00000015254	-	96	59.459	ENSSDUG00000008682	-	99	45.588
ENSSDUG00000015254	-	93	47.500	ENSSDUG00000020788	-	65	47.500
ENSSDUG00000015254	-	90	58.647	ENSSDUG00000015182	-	79	53.433
ENSSDUG00000015254	-	97	44.335	ENSSDUG00000020595	-	89	48.819
ENSSDUG00000015254	-	97	55.491	ENSSDUG00000015622	-	98	51.938
ENSSDUG00000015254	-	96	62.406	ENSSDUG00000015204	-	93	62.406

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000015254	-	97	60.000	ENSAPOG00000006303	-	91	62.500	Acanthochromis_polyacanthus
ENSSDUG00000015254	-	96	58.871	ENSAPOG00000008802	-	99	61.842	Acanthochromis_polyacanthus
ENSSDUG00000015254	-	95	47.059	ENSAPOG00000019960	-	96	47.059	Acanthochromis_polyacanthus
ENSSDUG00000015254	-	96	63.077	ENSACIG00000004745	-	93	63.077	Amphilophus_citrinellus
ENSSDUG00000015254	-	94	51.705	ENSACIG00000022658	-	96	53.506	Amphilophus_citrinellus
ENSSDUG00000015254	-	96	59.375	ENSAOCG00000014165	-	90	59.375	Amphiprion_ocellaris
ENSSDUG00000015254	-	97	60.000	ENSAOCG00000013130	-	91	60.000	Amphiprion_ocellaris
ENSSDUG00000015254	-	93	61.240	ENSAOCG00000013710	-	83	61.240	Amphiprion_ocellaris
ENSSDUG00000015254	-	97	60.000	ENSAPEG00000009383	-	87	60.156	Amphiprion_percula
ENSSDUG00000015254	-	91	62.500	ENSAPEG00000006650	-	98	62.500	Amphiprion_percula
ENSSDUG00000015254	-	95	50.382	ENSATEG00000017618	-	89	50.382	Anabas_testudineus
ENSSDUG00000015254	-	95	50.382	ENSATEG00000015695	-	89	50.382	Anabas_testudineus
ENSSDUG00000015254	-	98	53.782	ENSACLG00000018746	-	99	49.587	Astatotilapia_calliptera
ENSSDUG00000015254	-	93	57.143	ENSACLG00000026703	-	81	51.320	Astatotilapia_calliptera
ENSSDUG00000015254	-	97	56.061	ENSACLG00000021343	-	99	56.061	Astatotilapia_calliptera
ENSSDUG00000015254	-	97	60.976	ENSACLG00000023513	-	97	55.469	Astatotilapia_calliptera
ENSSDUG00000015254	-	97	44.961	ENSACLG00000019291	-	88	44.961	Astatotilapia_calliptera
ENSSDUG00000015254	-	93	46.835	ENSAMXG00000041975	-	88	46.835	Astyanax_mexicanus
ENSSDUG00000015254	-	91	47.826	ENSAMXG00000043302	-	78	47.120	Astyanax_mexicanus
ENSSDUG00000015254	-	96	43.807	ENSAMXG00000042275	-	98	43.807	Astyanax_mexicanus
ENSSDUG00000015254	-	95	50.000	ENSAMXG00000039408	-	92	46.185	Astyanax_mexicanus
ENSSDUG00000015254	-	91	50.230	ENSAMXG00000035920	-	92	49.254	Astyanax_mexicanus
ENSSDUG00000015254	-	92	47.337	ENSBTAG00000016191	ZNF32	71	47.727	Bos_taurus
ENSSDUG00000015254	-	92	47.337	ENSCHIG00000021099	ZNF32	71	47.727	Capra_hircus
ENSSDUG00000015254	-	88	46.565	ENSCSAVG00000001808	-	100	46.565	Ciona_savignyi
ENSSDUG00000015254	-	88	63.793	ENSCVAG00000021225	-	90	63.793	Cyprinodon_variegatus
ENSSDUG00000015254	-	89	47.586	ENSDARG00000099986	si:ch211-207i20.2	59	48.872	Danio_rerio
ENSSDUG00000015254	-	94	46.746	ENSDNOG00000035046	ZNF32	71	47.727	Dasypus_novemcinctus
ENSSDUG00000015254	-	97	47.337	ENSEASG00005006910	ZNF32	71	47.727	Equus_asinus_asinus
ENSSDUG00000015254	-	97	47.337	ENSECAG00000023676	ZNF32	71	47.727	Equus_caballus
ENSSDUG00000015254	-	88	50.943	ENSELUG00000021229	-	91	36.038	Esox_lucius
ENSSDUG00000015254	-	93	49.254	ENSFHEG00000000678	-	68	49.254	Fundulus_heteroclitus
ENSSDUG00000015254	-	95	50.388	ENSFHEG00000018063	-	91	50.388	Fundulus_heteroclitus
ENSSDUG00000015254	-	99	52.713	ENSGAFG00000020499	-	71	48.624	Gambusia_affinis
ENSSDUG00000015254	-	89	46.667	ENSGACG00000010352	si:ch211-207i20.2	66	48.936	Gasterosteus_aculeatus
ENSSDUG00000015254	-	91	38.983	ENSHBUG00000013296	-	97	38.983	Haplochromis_burtoni
ENSSDUG00000015254	-	98	49.669	ENSHBUG00000015166	-	97	49.669	Haplochromis_burtoni
ENSSDUG00000015254	-	88	62.651	ENSHBUG00000021003	-	98	62.651	Haplochromis_burtoni
ENSSDUG00000015254	-	92	43.295	ENSIPUG00000005733	-	71	43.295	Ictalurus_punctatus
ENSSDUG00000015254	-	89	50.673	ENSIPUG00000021998	-	91	50.376	Ictalurus_punctatus
ENSSDUG00000015254	-	89	50.781	ENSIPUG00000022741	-	85	50.781	Ictalurus_punctatus
ENSSDUG00000015254	-	95	49.612	ENSIPUG00000002655	-	97	51.351	Ictalurus_punctatus
ENSSDUG00000015254	-	92	51.220	ENSIPUG00000023761	-	67	51.220	Ictalurus_punctatus
ENSSDUG00000015254	-	90	52.113	ENSLBEG00000020128	-	96	52.113	Labrus_bergylta
ENSSDUG00000015254	-	87	47.727	ENSMMUG00000042578	ZNF32	78	47.727	Macaca_mulatta
ENSSDUG00000015254	-	82	52.542	ENSMAMG00000014734	-	82	36.364	Mastacembelus_armatus
ENSSDUG00000015254	-	98	37.063	ENSMZEG00005020156	-	82	37.063	Maylandia_zebra
ENSSDUG00000015254	-	93	40.602	ENSMZEG00005014592	-	90	40.602	Maylandia_zebra
ENSSDUG00000015254	-	94	55.085	ENSMZEG00005007262	-	98	54.400	Maylandia_zebra
ENSSDUG00000015254	-	98	53.782	ENSMZEG00005003336	-	94	53.782	Maylandia_zebra
ENSSDUG00000015254	-	93	63.846	ENSMZEG00005019918	-	95	58.929	Maylandia_zebra
ENSSDUG00000015254	-	98	40.769	ENSMZEG00005012715	-	74	38.122	Maylandia_zebra
ENSSDUG00000015254	-	95	48.175	ENSMZEG00005025343	-	99	48.175	Maylandia_zebra
ENSSDUG00000015254	-	92	54.497	ENSMZEG00005026082	-	76	50.000	Maylandia_zebra
ENSSDUG00000015254	-	98	50.291	ENSMZEG00005021052	-	92	50.291	Maylandia_zebra
ENSSDUG00000015254	-	96	45.098	ENSMZEG00005020162	-	80	38.816	Maylandia_zebra
ENSSDUG00000015254	-	98	49.600	ENSMMOG00000006131	-	87	50.476	Mola_mola
ENSSDUG00000015254	-	96	56.863	ENSMMOG00000010703	-	100	54.545	Mola_mola
ENSSDUG00000015254	-	96	54.264	ENSMMOG00000004460	-	93	53.435	Mola_mola
ENSSDUG00000015254	-	92	50.855	ENSMALG00000004216	-	61	54.478	Monopterus_albus
ENSSDUG00000015254	-	97	54.135	ENSMALG00000007051	-	99	54.135	Monopterus_albus
ENSSDUG00000015254	-	99	50.000	ENSMALG00000015655	-	99	52.000	Monopterus_albus
ENSSDUG00000015254	-	97	47.727	ENSMUSG00000059689	Zfp637	76	47.727	Mus_musculus
ENSSDUG00000015254	-	92	47.337	MGP_PahariEiJ_G0022533	Zfp637	71	47.727	Mus_pahari
ENSSDUG00000015254	-	97	47.727	MGP_SPRETEiJ_G0029809	Zfp637	76	47.727	Mus_spretus
ENSSDUG00000015254	-	97	46.746	ENSNGAG00000020281	Zfp637	71	47.727	Nannospalax_galili
ENSSDUG00000015254	-	97	42.857	ENSNBRG00000016564	-	82	42.857	Neolamprologus_brichardi
ENSSDUG00000015254	-	97	45.714	ENSNBRG00000005849	-	84	45.690	Neolamprologus_brichardi
ENSSDUG00000015254	-	95	55.385	ENSNBRG00000000523	-	79	51.515	Neolamprologus_brichardi
ENSSDUG00000015254	-	92	46.809	ENSNBRG00000005796	-	96	46.809	Neolamprologus_brichardi
ENSSDUG00000015254	-	97	42.453	ENSNBRG00000005805	-	94	42.453	Neolamprologus_brichardi
ENSSDUG00000015254	-	91	49.645	ENSNBRG00000003000	-	80	49.645	Neolamprologus_brichardi
ENSSDUG00000015254	-	95	44.615	ENSONIG00000015514	-	87	44.615	Oreochromis_niloticus
ENSSDUG00000015254	-	97	43.243	ENSONIG00000015552	-	96	40.909	Oreochromis_niloticus
ENSSDUG00000015254	-	97	41.732	ENSONIG00000005693	-	97	41.732	Oreochromis_niloticus
ENSSDUG00000015254	-	92	47.337	ENSOARG00000002999	ZNF32	71	47.727	Ovis_aries
ENSSDUG00000015254	-	98	47.287	ENSPLAG00000015973	-	99	47.287	Poecilia_latipinna
ENSSDUG00000015254	-	98	51.181	ENSPMEG00000006726	-	95	53.846	Poecilia_mexicana
ENSSDUG00000015254	-	96	53.030	ENSPMEG00000016458	-	97	53.030	Poecilia_mexicana
ENSSDUG00000015254	-	96	45.215	ENSPREG00000010437	-	85	44.253	Poecilia_reticulata
ENSSDUG00000015254	-	95	47.134	ENSPCAG00000005270	-	90	47.134	Procavia_capensis
ENSSDUG00000015254	-	92	50.467	ENSPVAG00000009430	-	79	45.307	Pteropus_vampyrus
ENSSDUG00000015254	-	92	55.039	ENSPNYG00000007597	-	96	55.039	Pundamilia_nyererei
ENSSDUG00000015254	-	98	58.333	ENSPNYG00000002684	-	99	58.333	Pundamilia_nyererei
ENSSDUG00000015254	-	93	48.462	ENSPNAG00000029997	-	88	48.462	Pygocentrus_nattereri
ENSSDUG00000015254	-	89	51.515	ENSSFOG00015015878	-	93	48.819	Scleropages_formosus
ENSSDUG00000015254	-	94	91.404	ENSSLDG00000012036	-	96	91.404	Seriola_lalandi_dorsalis
ENSSDUG00000015254	-	98	57.143	ENSSLDG00000020675	-	100	57.143	Seriola_lalandi_dorsalis
ENSSDUG00000015254	-	96	52.727	ENSSLDG00000018273	-	90	55.303	Seriola_lalandi_dorsalis
ENSSDUG00000015254	-	84	50.758	ENSSARG00000000532	-	85	50.758	Sorex_araneus
ENSSDUG00000015254	-	87	47.727	ENSSSCG00000010416	ZNF32	78	47.727	Sus_scrofa
ENSSDUG00000015254	-	96	52.593	ENSXCOG00000008116	-	99	52.593	Xiphophorus_couchianus