EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000015330 (Gene tree)
Gene ID: 111235287
Gene Symbol: smndc1
Alias: TDRD10|spf30|wu:fb37h07|wu:fc23a07
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 5938 bases
Position: chrBDQW01000478.1:3264528-3270465
Accession: 111235287
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000021083	TUDOR	PF00567.24	0.00044	1	1
ENSSDUP00000021083	SMN	PF06003.12	2.4e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000021464	-	3831	XM_022763698	ENSSDUP00000021083	238 (aa)	XP_022619419	UPI000BBF0D89

Gene Model

Click here to download ENSSDUG00000015330's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000015330's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000015330	smndc1	100	76.891	ENSG00000119953	SMNDC1	100	76.891	Homo_sapiens
ENSSDUG00000015330	smndc1	100	93.697	ENSAPOG00000021772	smndc1	100	93.697	Acanthochromis_polyacanthus
ENSSDUG00000015330	smndc1	100	76.471	ENSAMEG00000005251	SMNDC1	100	76.471	Ailuropoda_melanoleuca
ENSSDUG00000015330	smndc1	100	92.857	ENSACIG00000004819	smndc1	100	92.857	Amphilophus_citrinellus
ENSSDUG00000015330	smndc1	100	92.437	ENSAOCG00000017869	smndc1	100	92.437	Amphiprion_ocellaris
ENSSDUG00000015330	smndc1	100	92.437	ENSAPEG00000007752	smndc1	100	92.437	Amphiprion_percula
ENSSDUG00000015330	smndc1	100	93.697	ENSATEG00000006830	smndc1	100	93.697	Anabas_testudineus
ENSSDUG00000015330	smndc1	83	77.778	ENSAPLG00000004322	SMNDC1	100	77.778	Anas_platyrhynchos
ENSSDUG00000015330	smndc1	100	77.731	ENSACAG00000005983	SMNDC1	100	77.731	Anolis_carolinensis
ENSSDUG00000015330	smndc1	100	76.471	ENSANAG00000032875	SMNDC1	100	76.471	Aotus_nancymaae
ENSSDUG00000015330	smndc1	100	91.176	ENSACLG00000016360	smndc1	100	91.176	Astatotilapia_calliptera
ENSSDUG00000015330	smndc1	100	82.773	ENSAMXG00000020310	smndc1	100	82.773	Astyanax_mexicanus
ENSSDUG00000015330	smndc1	100	78.243	ENSBTAG00000000551	SMNDC1	100	78.243	Bos_taurus
ENSSDUG00000015330	smndc1	100	76.471	ENSCJAG00000018624	SMNDC1	100	76.471	Callithrix_jacchus
ENSSDUG00000015330	smndc1	100	76.471	ENSCAFG00000010720	SMNDC1	100	76.471	Canis_familiaris
ENSSDUG00000015330	smndc1	100	76.471	ENSCAFG00020011913	SMNDC1	100	76.471	Canis_lupus_dingo
ENSSDUG00000015330	smndc1	100	78.243	ENSCHIG00000010604	SMNDC1	100	78.243	Capra_hircus
ENSSDUG00000015330	smndc1	100	76.471	ENSTSYG00000026454	SMNDC1	100	76.471	Carlito_syrichta
ENSSDUG00000015330	smndc1	84	73.134	ENSCAPG00000009132	SMNDC1	100	73.134	Cavia_aperea
ENSSDUG00000015330	smndc1	100	76.471	ENSCPOG00000031666	SMNDC1	100	76.471	Cavia_porcellus
ENSSDUG00000015330	smndc1	100	76.471	ENSCCAG00000021793	SMNDC1	100	76.471	Cebus_capucinus
ENSSDUG00000015330	smndc1	100	76.050	ENSCATG00000035910	SMNDC1	100	76.050	Cercocebus_atys
ENSSDUG00000015330	smndc1	100	76.471	ENSCLAG00000002838	SMNDC1	100	76.471	Chinchilla_lanigera
ENSSDUG00000015330	smndc1	100	76.471	ENSCSAG00000005169	SMNDC1	100	76.471	Chlorocebus_sabaeus
ENSSDUG00000015330	smndc1	81	72.539	ENSCHOG00000002936	SMNDC1	100	72.539	Choloepus_hoffmanni
ENSSDUG00000015330	smndc1	100	76.891	ENSCPBG00000012837	SMNDC1	100	76.891	Chrysemys_picta_bellii
ENSSDUG00000015330	smndc1	100	61.088	ENSCANG00000036994	-	100	61.088	Colobus_angolensis_palliatus
ENSSDUG00000015330	smndc1	100	76.471	ENSCANG00000031720	-	100	76.471	Colobus_angolensis_palliatus
ENSSDUG00000015330	smndc1	100	70.168	ENSCANG00000034620	-	100	70.168	Colobus_angolensis_palliatus
ENSSDUG00000015330	smndc1	100	76.050	ENSCGRG00001012973	Smndc1	100	76.050	Cricetulus_griseus_chok1gshd
ENSSDUG00000015330	smndc1	100	76.050	ENSCGRG00000012396	Smndc1	100	76.050	Cricetulus_griseus_crigri
ENSSDUG00000015330	smndc1	100	86.975	ENSCSEG00000015621	smndc1	100	86.975	Cynoglossus_semilaevis
ENSSDUG00000015330	smndc1	100	88.655	ENSCVAG00000020432	smndc1	100	88.655	Cyprinodon_variegatus
ENSSDUG00000015330	smndc1	100	84.100	ENSDARG00000056235	smndc1	100	84.100	Danio_rerio
ENSSDUG00000015330	smndc1	100	76.471	ENSDNOG00000016387	SMNDC1	83	76.471	Dasypus_novemcinctus
ENSSDUG00000015330	smndc1	100	76.471	ENSDORG00000023715	Smndc1	100	76.471	Dipodomys_ordii
ENSSDUG00000015330	smndc1	97	41.502	FBgn0039977	CG17454	98	43.083	Drosophila_melanogaster
ENSSDUG00000015330	smndc1	100	68.465	ENSEBUG00000010929	smndc1	100	69.710	Eptatretus_burgeri
ENSSDUG00000015330	smndc1	100	76.471	ENSEASG00005014930	SMNDC1	100	76.471	Equus_asinus_asinus
ENSSDUG00000015330	smndc1	100	76.471	ENSECAG00000029973	SMNDC1	100	76.471	Equus_caballus
ENSSDUG00000015330	smndc1	83	54.545	ENSEEUG00000013407	-	100	54.545	Erinaceus_europaeus
ENSSDUG00000015330	smndc1	100	86.134	ENSELUG00000000227	smndc1	100	86.134	Esox_lucius
ENSSDUG00000015330	smndc1	100	76.471	ENSFCAG00000027353	SMNDC1	100	76.471	Felis_catus
ENSSDUG00000015330	smndc1	100	78.151	ENSFALG00000002306	SMNDC1	100	78.151	Ficedula_albicollis
ENSSDUG00000015330	smndc1	100	76.891	ENSFDAG00000006468	SMNDC1	100	76.891	Fukomys_damarensis
ENSSDUG00000015330	smndc1	100	91.176	ENSFHEG00000020150	smndc1	100	91.176	Fundulus_heteroclitus
ENSSDUG00000015330	smndc1	100	85.714	ENSGMOG00000016585	smndc1	100	85.714	Gadus_morhua
ENSSDUG00000015330	smndc1	100	78.151	ENSGALG00000008561	SMNDC1	100	78.151	Gallus_gallus
ENSSDUG00000015330	smndc1	100	89.076	ENSGAFG00000011582	smndc1	100	89.076	Gambusia_affinis
ENSSDUG00000015330	smndc1	100	91.176	ENSGACG00000009468	smndc1	100	91.176	Gasterosteus_aculeatus
ENSSDUG00000015330	smndc1	100	76.891	ENSGAGG00000024547	SMNDC1	100	76.891	Gopherus_agassizii
ENSSDUG00000015330	smndc1	100	76.471	ENSGGOG00000010071	SMNDC1	100	76.471	Gorilla_gorilla
ENSSDUG00000015330	smndc1	100	91.176	ENSHBUG00000017596	smndc1	100	91.176	Haplochromis_burtoni
ENSSDUG00000015330	smndc1	100	76.891	ENSHGLG00000013390	-	100	76.891	Heterocephalus_glaber_female
ENSSDUG00000015330	smndc1	100	56.327	ENSHGLG00000001157	-	100	55.102	Heterocephalus_glaber_female
ENSSDUG00000015330	smndc1	100	76.891	ENSHGLG00100004814	-	100	76.891	Heterocephalus_glaber_male
ENSSDUG00000015330	smndc1	100	61.633	ENSHGLG00100004278	-	100	59.919	Heterocephalus_glaber_male
ENSSDUG00000015330	smndc1	100	84.519	ENSHCOG00000000783	smndc1	100	84.519	Hippocampus_comes
ENSSDUG00000015330	smndc1	100	86.555	ENSIPUG00000004217	smndc1	100	86.555	Ictalurus_punctatus
ENSSDUG00000015330	smndc1	100	76.471	ENSSTOG00000006088	SMNDC1	100	76.471	Ictidomys_tridecemlineatus
ENSSDUG00000015330	smndc1	100	76.471	ENSJJAG00000019974	Smndc1	100	76.471	Jaculus_jaculus
ENSSDUG00000015330	smndc1	100	88.655	ENSKMAG00000020134	smndc1	100	88.655	Kryptolebias_marmoratus
ENSSDUG00000015330	smndc1	100	90.756	ENSLBEG00000004598	smndc1	100	90.756	Labrus_bergylta
ENSSDUG00000015330	smndc1	100	77.731	ENSLACG00000007784	SMNDC1	100	77.731	Latimeria_chalumnae
ENSSDUG00000015330	smndc1	100	82.773	ENSLOCG00000012355	smndc1	100	82.773	Lepisosteus_oculatus
ENSSDUG00000015330	smndc1	100	76.050	ENSLAFG00000014353	SMNDC1	100	76.050	Loxodonta_africana
ENSSDUG00000015330	smndc1	100	64.706	ENSMFAG00000038381	-	100	64.706	Macaca_fascicularis
ENSSDUG00000015330	smndc1	100	76.471	ENSMFAG00000002433	-	100	76.471	Macaca_fascicularis
ENSSDUG00000015330	smndc1	100	76.471	ENSMMUG00000007775	SMNDC1	100	76.471	Macaca_mulatta
ENSSDUG00000015330	smndc1	100	64.706	ENSMMUG00000045875	-	100	64.706	Macaca_mulatta
ENSSDUG00000015330	smndc1	100	67.227	ENSMNEG00000033853	-	100	67.227	Macaca_nemestrina
ENSSDUG00000015330	smndc1	100	76.471	ENSMNEG00000042963	-	100	76.471	Macaca_nemestrina
ENSSDUG00000015330	smndc1	100	71.548	ENSMLEG00000040236	SMNDC1	100	71.130	Mandrillus_leucophaeus
ENSSDUG00000015330	smndc1	89	92.019	ENSMAMG00000018233	smndc1	87	92.019	Mastacembelus_armatus
ENSSDUG00000015330	smndc1	100	91.176	ENSMZEG00005027510	smndc1	100	91.176	Maylandia_zebra
ENSSDUG00000015330	smndc1	99	69.328	ENSMGAG00000010777	SMNDC1	100	69.328	Meleagris_gallopavo
ENSSDUG00000015330	smndc1	100	76.471	ENSMAUG00000012243	-	100	76.471	Mesocricetus_auratus
ENSSDUG00000015330	smndc1	99	63.713	ENSMAUG00000005459	-	93	63.713	Mesocricetus_auratus
ENSSDUG00000015330	smndc1	100	76.050	ENSMICG00000027336	-	100	76.050	Microcebus_murinus
ENSSDUG00000015330	smndc1	100	65.966	ENSMICG00000031640	-	100	65.966	Microcebus_murinus
ENSSDUG00000015330	smndc1	100	76.050	ENSMOCG00000002458	Smndc1	100	76.050	Microtus_ochrogaster
ENSSDUG00000015330	smndc1	100	90.756	ENSMMOG00000008856	smndc1	100	90.756	Mola_mola
ENSSDUG00000015330	smndc1	100	76.891	ENSMODG00000010542	SMNDC1	100	76.891	Monodelphis_domestica
ENSSDUG00000015330	smndc1	100	93.697	ENSMALG00000017598	smndc1	100	93.697	Monopterus_albus
ENSSDUG00000015330	smndc1	100	76.471	MGP_CAROLIEiJ_G0023072	Smndc1	100	76.471	Mus_caroli
ENSSDUG00000015330	smndc1	100	76.471	ENSMUSG00000025024	Smndc1	100	76.471	Mus_musculus
ENSSDUG00000015330	smndc1	100	76.471	MGP_PahariEiJ_G0014560	Smndc1	100	76.471	Mus_pahari
ENSSDUG00000015330	smndc1	100	76.471	MGP_SPRETEiJ_G0023993	Smndc1	100	76.471	Mus_spretus
ENSSDUG00000015330	smndc1	100	76.471	ENSMPUG00000002089	SMNDC1	100	76.471	Mustela_putorius_furo
ENSSDUG00000015330	smndc1	100	76.471	ENSMLUG00000016007	SMNDC1	100	76.471	Myotis_lucifugus
ENSSDUG00000015330	smndc1	100	76.891	ENSNGAG00000006833	Smndc1	100	76.891	Nannospalax_galili
ENSSDUG00000015330	smndc1	100	91.176	ENSNBRG00000017089	smndc1	100	91.176	Neolamprologus_brichardi
ENSSDUG00000015330	smndc1	100	76.471	ENSNLEG00000015471	SMNDC1	100	76.471	Nomascus_leucogenys
ENSSDUG00000015330	smndc1	82	55.500	ENSMEUG00000010120	-	100	55.224	Notamacropus_eugenii
ENSSDUG00000015330	smndc1	100	76.471	ENSOPRG00000015348	SMNDC1	100	76.471	Ochotona_princeps
ENSSDUG00000015330	smndc1	100	55.042	ENSODEG00000007594	-	100	52.941	Octodon_degus
ENSSDUG00000015330	smndc1	100	91.176	ENSONIG00000000434	smndc1	100	91.176	Oreochromis_niloticus
ENSSDUG00000015330	smndc1	100	77.311	ENSOANG00000001598	SMNDC1	100	77.311	Ornithorhynchus_anatinus
ENSSDUG00000015330	smndc1	100	57.143	ENSOCUG00000012274	-	100	59.664	Oryctolagus_cuniculus
ENSSDUG00000015330	smndc1	100	76.471	ENSOCUG00000008145	-	100	76.471	Oryctolagus_cuniculus
ENSSDUG00000015330	smndc1	100	84.454	ENSORLG00000005934	smndc1	95	84.454	Oryzias_latipes
ENSSDUG00000015330	smndc1	100	84.454	ENSORLG00020008796	smndc1	95	84.454	Oryzias_latipes_hni
ENSSDUG00000015330	smndc1	100	84.034	ENSORLG00015013666	smndc1	100	84.034	Oryzias_latipes_hsok
ENSSDUG00000015330	smndc1	100	81.933	ENSOMEG00000007590	smndc1	100	81.933	Oryzias_melastigma
ENSSDUG00000015330	smndc1	100	78.243	ENSOGAG00000000571	SMNDC1	100	78.243	Otolemur_garnettii
ENSSDUG00000015330	smndc1	100	78.243	ENSOARG00000009500	SMNDC1	100	78.243	Ovis_aries
ENSSDUG00000015330	smndc1	100	76.471	ENSPPAG00000027815	SMNDC1	100	76.471	Pan_paniscus
ENSSDUG00000015330	smndc1	100	76.471	ENSPPRG00000013749	SMNDC1	100	76.471	Panthera_pardus
ENSSDUG00000015330	smndc1	100	76.471	ENSPTIG00000011451	SMNDC1	100	76.471	Panthera_tigris_altaica
ENSSDUG00000015330	smndc1	100	76.471	ENSPTRG00000002937	SMNDC1	100	76.471	Pan_troglodytes
ENSSDUG00000015330	smndc1	100	72.269	ENSPANG00000031346	-	100	72.269	Papio_anubis
ENSSDUG00000015330	smndc1	100	76.471	ENSPANG00000020805	-	100	76.471	Papio_anubis
ENSSDUG00000015330	smndc1	100	81.092	ENSPKIG00000017164	smndc1	100	81.092	Paramormyrops_kingsleyae
ENSSDUG00000015330	smndc1	100	77.311	ENSPSIG00000012257	SMNDC1	100	77.311	Pelodiscus_sinensis
ENSSDUG00000015330	smndc1	100	82.773	ENSPMGG00000015651	smndc1	100	82.773	Periophthalmus_magnuspinnatus
ENSSDUG00000015330	smndc1	100	76.471	ENSPEMG00000022058	Smndc1	100	76.471	Peromyscus_maniculatus_bairdii
ENSSDUG00000015330	smndc1	100	64.754	ENSPMAG00000007705	smndc1	100	64.754	Petromyzon_marinus
ENSSDUG00000015330	smndc1	95	58.850	ENSPCIG00000009693	-	98	58.850	Phascolarctos_cinereus
ENSSDUG00000015330	smndc1	100	76.891	ENSPCIG00000018419	SMNDC1	100	76.891	Phascolarctos_cinereus
ENSSDUG00000015330	smndc1	100	90.336	ENSPFOG00000017113	smndc1	100	90.336	Poecilia_formosa
ENSSDUG00000015330	smndc1	100	89.496	ENSPLAG00000010372	smndc1	100	89.496	Poecilia_latipinna
ENSSDUG00000015330	smndc1	100	89.916	ENSPMEG00000012288	smndc1	100	89.916	Poecilia_mexicana
ENSSDUG00000015330	smndc1	100	88.235	ENSPREG00000012279	smndc1	100	88.235	Poecilia_reticulata
ENSSDUG00000015330	smndc1	100	76.471	ENSPPYG00000002643	SMNDC1	100	76.471	Pongo_abelii
ENSSDUG00000015330	smndc1	81	72.539	ENSPCAG00000016183	SMNDC1	100	72.539	Procavia_capensis
ENSSDUG00000015330	smndc1	100	76.050	ENSPCOG00000024343	SMNDC1	100	76.050	Propithecus_coquereli
ENSSDUG00000015330	smndc1	100	60.084	ENSPVAG00000004368	SMNDC1	100	60.084	Pteropus_vampyrus
ENSSDUG00000015330	smndc1	83	90.404	ENSPNYG00000024093	smndc1	86	90.404	Pundamilia_nyererei
ENSSDUG00000015330	smndc1	100	82.773	ENSPNAG00000025285	smndc1	100	82.773	Pygocentrus_nattereri
ENSSDUG00000015330	smndc1	100	76.471	ENSRNOG00000014833	Smndc1	100	76.471	Rattus_norvegicus
ENSSDUG00000015330	smndc1	100	76.050	ENSRBIG00000000224	-	100	76.050	Rhinopithecus_bieti
ENSSDUG00000015330	smndc1	100	62.605	ENSRBIG00000032452	-	100	62.605	Rhinopithecus_bieti
ENSSDUG00000015330	smndc1	100	76.471	ENSRROG00000044992	-	100	76.471	Rhinopithecus_roxellana
ENSSDUG00000015330	smndc1	100	63.025	ENSRROG00000039125	-	100	63.025	Rhinopithecus_roxellana
ENSSDUG00000015330	smndc1	100	76.471	ENSSBOG00000026789	SMNDC1	100	76.471	Saimiri_boliviensis_boliviensis
ENSSDUG00000015330	smndc1	100	76.891	ENSSHAG00000015189	SMNDC1	100	76.891	Sarcophilus_harrisii
ENSSDUG00000015330	smndc1	100	80.252	ENSSFOG00015008311	smndc1	100	80.252	Scleropages_formosus
ENSSDUG00000015330	smndc1	100	93.697	ENSSMAG00000020118	smndc1	100	93.697	Scophthalmus_maximus
ENSSDUG00000015330	smndc1	100	99.580	ENSSLDG00000017325	smndc1	100	99.580	Seriola_lalandi_dorsalis
ENSSDUG00000015330	smndc1	100	76.471	ENSSARG00000006063	SMNDC1	100	76.471	Sorex_araneus
ENSSDUG00000015330	smndc1	100	77.731	ENSSPUG00000004574	SMNDC1	100	77.731	Sphenodon_punctatus
ENSSDUG00000015330	smndc1	100	93.697	ENSSPAG00000000338	smndc1	100	93.697	Stegastes_partitus
ENSSDUG00000015330	smndc1	100	76.471	ENSSSCG00000030507	SMNDC1	100	76.471	Sus_scrofa
ENSSDUG00000015330	smndc1	100	78.151	ENSTGUG00000010599	SMNDC1	100	78.151	Taeniopygia_guttata
ENSSDUG00000015330	smndc1	100	84.874	ENSTRUG00000023281	smndc1	100	84.874	Takifugu_rubripes
ENSSDUG00000015330	smndc1	100	84.454	ENSTNIG00000013331	smndc1	100	84.454	Tetraodon_nigroviridis
ENSSDUG00000015330	smndc1	100	76.471	ENSTBEG00000014337	SMNDC1	100	76.471	Tupaia_belangeri
ENSSDUG00000015330	smndc1	100	76.471	ENSUAMG00000008142	SMNDC1	100	76.471	Ursus_americanus
ENSSDUG00000015330	smndc1	100	76.471	ENSUMAG00000023722	SMNDC1	100	76.471	Ursus_maritimus
ENSSDUG00000015330	smndc1	83	76.263	ENSVPAG00000003402	SMNDC1	100	76.263	Vicugna_pacos
ENSSDUG00000015330	smndc1	100	76.471	ENSVVUG00000007820	SMNDC1	100	76.471	Vulpes_vulpes
ENSSDUG00000015330	smndc1	60	63.380	ENSXETG00000015415	SMNDC1	100	63.380	Xenopus_tropicalis
ENSSDUG00000015330	smndc1	100	89.916	ENSXCOG00000009159	smndc1	100	89.916	Xiphophorus_couchianus
ENSSDUG00000015330	smndc1	100	89.916	ENSXMAG00000012755	smndc1	100	89.916	Xiphophorus_maculatus