EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSSDUG00000015380 (Gene tree)
Gene ID
111230674
Gene Symbol
csde1
Alias
fa92c07|si:ch211-261n11.2|wu:fa92c07|wu:fa97c10|wu:fb53f07|wu:fb78d03
Full Name
cold shock domain containing E1
Gene Type
protein_coding
Species
Seriola_dumerili
Status
putative
Strand
Plus strand
Length
10674 bases
Position
chrBDQW01000278.1:1181904-1192577
Accession
111230674
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSDUP00000021382CSDPF00313.223.7e-8215
ENSSDUP00000021382CSDPF00313.223.7e-8225
ENSSDUP00000021382CSDPF00313.223.7e-8235
ENSSDUP00000021382CSDPF00313.223.7e-8245
ENSSDUP00000021382CSDPF00313.223.7e-8255
ENSSDUP00000021255CSDPF00313.226.4e-8215
ENSSDUP00000021255CSDPF00313.226.4e-8225
ENSSDUP00000021255CSDPF00313.226.4e-8235
ENSSDUP00000021255CSDPF00313.226.4e-8245
ENSSDUP00000021255CSDPF00313.226.4e-8255
ENSSDUP00000021214CSDPF00313.226.9e-8215
ENSSDUP00000021214CSDPF00313.226.9e-8225
ENSSDUP00000021214CSDPF00313.226.9e-8235
ENSSDUP00000021214CSDPF00313.226.9e-8245
ENSSDUP00000021214CSDPF00313.226.9e-8255
ENSSDUP00000021333CSDPF00313.228e-8215
ENSSDUP00000021333CSDPF00313.228e-8225
ENSSDUP00000021333CSDPF00313.228e-8235
ENSSDUP00000021333CSDPF00313.228e-8245
ENSSDUP00000021333CSDPF00313.228e-8255
ENSSDUP00000021281CSDPF00313.229.4e-8215
ENSSDUP00000021281CSDPF00313.229.4e-8225
ENSSDUP00000021281CSDPF00313.229.4e-8235
ENSSDUP00000021281CSDPF00313.229.4e-8245
ENSSDUP00000021281CSDPF00313.229.4e-8255
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSDUT00000021647-3236-ENSSDUP00000021255864 (aa)--
ENSSDUT00000021724-3177XM_022757475ENSSDUP00000021333879 (aa)XP_022613196UPI000BBEA6FD
ENSSDUT00000021774-2307XM_022757481ENSSDUP00000021382768 (aa)XP_022613202-
ENSSDUT00000021673-3218-ENSSDUP00000021281858 (aa)--
ENSSDUT00000021605-3248XM_022757478ENSSDUP00000021214868 (aa)XP_022613199-
Gene Model
Click here to download ENSSDUG00000015380's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000015380's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSDUG00000015380csde110077.662ENSG00000009307CSDE110084.559Homo_sapiens
ENSSDUG00000015380csde110096.875ENSAPOG00000015538csde110096.875Acanthochromis_polyacanthus
ENSSDUG00000015380csde110076.883ENSAMEG00000017129CSDE19476.883Ailuropoda_melanoleuca
ENSSDUG00000015380csde19094.324ENSACIG00000015175csde110094.324Amphilophus_citrinellus
ENSSDUG00000015380csde110096.875ENSAOCG00000011510csde110096.875Amphiprion_ocellaris
ENSSDUG00000015380csde110097.005ENSAPEG00000007194csde110097.005Amphiprion_percula
ENSSDUG00000015380csde110095.059ENSATEG00000003864csde110095.059Anabas_testudineus
ENSSDUG00000015380csde110079.844ENSAPLG00000008797CSDE110079.844Anas_platyrhynchos
ENSSDUG00000015380csde110077.125ENSACAG00000003120CSDE110077.900Anolis_carolinensis
ENSSDUG00000015380csde110077.532ENSANAG00000024665CSDE19577.532Aotus_nancymaae
ENSSDUG00000015380csde19361.837ENSANAG00000028396-9162.925Aotus_nancymaae
ENSSDUG00000015380csde110094.408ENSACLG00000013296csde110094.408Astatotilapia_calliptera
ENSSDUG00000015380csde110087.030ENSAMXG00000007436csde110087.030Astyanax_mexicanus
ENSSDUG00000015380csde110077.403ENSBTAG00000000678CSDE110077.403Bos_taurus
ENSSDUG00000015380csde110077.532ENSCJAG00000012565CSDE19873.944Callithrix_jacchus
ENSSDUG00000015380csde19878.117ENSCAFG00000009618CSDE19478.117Canis_familiaris
ENSSDUG00000015380csde110077.922ENSCAFG00020000481CSDE110077.922Canis_lupus_dingo
ENSSDUG00000015380csde110077.403ENSCHIG00000017250CSDE110077.403Capra_hircus
ENSSDUG00000015380csde110077.662ENSTSYG00000003747CSDE110077.662Carlito_syrichta
ENSSDUG00000015380csde19568.132ENSCAPG00000015128CSDE110068.132Cavia_aperea
ENSSDUG00000015380csde110072.096ENSCPOG00000040388CSDE110072.096Cavia_porcellus
ENSSDUG00000015380csde19655.011ENSCCAG00000030878-9155.011Cebus_capucinus
ENSSDUG00000015380csde19557.109ENSCCAG00000033677-9957.109Cebus_capucinus
ENSSDUG00000015380csde110077.532ENSCCAG00000036794CSDE110075.366Cebus_capucinus
ENSSDUG00000015380csde110077.662ENSCATG00000036962CSDE19777.662Cercocebus_atys
ENSSDUG00000015380csde110077.792ENSCLAG00000006618CSDE110077.792Chinchilla_lanigera
ENSSDUG00000015380csde110074.657ENSCSAG00000001658CSDE19874.061Chlorocebus_sabaeus
ENSSDUG00000015380csde19682.243ENSCHOG00000000918CSDE18980.793Choloepus_hoffmanni
ENSSDUG00000015380csde110079.844ENSCPBG00000016547CSDE110079.844Chrysemys_picta_bellii
ENSSDUG00000015380csde19742.787ENSCING00000014465-9842.227Ciona_intestinalis
ENSSDUG00000015380csde19741.795ENSCSAVG00000008100-10042.312Ciona_savignyi
ENSSDUG00000015380csde110077.662ENSCANG00000035096CSDE19777.662Colobus_angolensis_palliatus
ENSSDUG00000015380csde18979.336ENSCANG00000031069-9479.336Colobus_angolensis_palliatus
ENSSDUG00000015380csde110063.247ENSCGRG00001014011-10063.247Cricetulus_griseus_chok1gshd
ENSSDUG00000015380csde110077.143ENSCGRG00001016833-10077.143Cricetulus_griseus_chok1gshd
ENSSDUG00000015380csde110073.478ENSCGRG00000005831-10073.478Cricetulus_griseus_crigri
ENSSDUG00000015380csde19673.778ENSCGRG00000002225-10073.778Cricetulus_griseus_crigri
ENSSDUG00000015380csde110093.108ENSCSEG00000002620csde110093.108Cynoglossus_semilaevis
ENSSDUG00000015380csde110092.328ENSCVAG00000001344csde110092.328Cyprinodon_variegatus
ENSSDUG00000015380csde110084.606ENSDARG00000074758csde110089.568Danio_rerio
ENSSDUG00000015380csde15957.627ENSDNOG00000034464-9960.000Dasypus_novemcinctus
ENSSDUG00000015380csde110077.951ENSDNOG00000010287-9377.951Dasypus_novemcinctus
ENSSDUG00000015380csde19976.453ENSDORG00000011609Csde110076.453Dipodomys_ordii
ENSSDUG00000015380csde19848.361FBgn0263352Unr8647.505Drosophila_melanogaster
ENSSDUG00000015380csde17953.960ENSETEG00000007109-9953.960Echinops_telfairi
ENSSDUG00000015380csde18981.301ENSETEG00000002491-8672.334Echinops_telfairi
ENSSDUG00000015380csde19068.976ENSETEG00000006280-10068.976Echinops_telfairi
ENSSDUG00000015380csde19960.417ENSETEG00000013678-9960.417Echinops_telfairi
ENSSDUG00000015380csde19954.680ENSEBUG00000008647csde19953.442Eptatretus_burgeri
ENSSDUG00000015380csde110078.182ENSEASG00005006284CSDE110075.976Equus_asinus_asinus
ENSSDUG00000015380csde110078.182ENSECAG00000020885CSDE19978.042Equus_caballus
ENSSDUG00000015380csde19381.308ENSEEUG00000006286CSDE16881.308Erinaceus_europaeus
ENSSDUG00000015380csde110089.977ENSELUG00000015507csde110089.977Esox_lucius
ENSSDUG00000015380csde110077.922ENSFCAG00000029266CSDE110077.922Felis_catus
ENSSDUG00000015380csde110076.250ENSFALG00000003407CSDE110077.045Ficedula_albicollis
ENSSDUG00000015380csde19976.453ENSFDAG00000007882CSDE110076.453Fukomys_damarensis
ENSSDUG00000015380csde19892.848ENSFHEG00000010799csde19992.848Fundulus_heteroclitus
ENSSDUG00000015380csde19987.218ENSGMOG00000012731csde110088.250Gadus_morhua
ENSSDUG00000015380csde19876.688ENSGALG00000002139CSDE19877.488Gallus_gallus
ENSSDUG00000015380csde19492.824ENSGAFG00000005241csde19592.824Gambusia_affinis
ENSSDUG00000015380csde19991.719ENSGACG00000004544csde110092.892Gasterosteus_aculeatus
ENSSDUG00000015380csde110079.844ENSGAGG00000017685CSDE110077.534Gopherus_agassizii
ENSSDUG00000015380csde110077.662ENSGGOG00000002164CSDE110077.662Gorilla_gorilla
ENSSDUG00000015380csde110094.408ENSHBUG00000020315csde110094.408Haplochromis_burtoni
ENSSDUG00000015380csde19967.628ENSHGLG00000007471-9867.628Heterocephalus_glaber_female
ENSSDUG00000015380csde19666.444ENSHGLG00000010039-10066.444Heterocephalus_glaber_female
ENSSDUG00000015380csde110070.519ENSHGLG00000009620-10070.649Heterocephalus_glaber_female
ENSSDUG00000015380csde110063.648ENSHGLG00000019549-10063.692Heterocephalus_glaber_female
ENSSDUG00000015380csde19667.809ENSHGLG00000008555-10067.809Heterocephalus_glaber_female
ENSSDUG00000015380csde110069.740ENSHGLG00000003829-10069.740Heterocephalus_glaber_female
ENSSDUG00000015380csde19959.700ENSHGLG00000000650-9960.758Heterocephalus_glaber_female
ENSSDUG00000015380csde110065.455ENSHGLG00100012072-10065.455Heterocephalus_glaber_male
ENSSDUG00000015380csde110063.636ENSHGLG00100001846-10063.636Heterocephalus_glaber_male
ENSSDUG00000015380csde19966.232ENSHGLG00100007287-9866.232Heterocephalus_glaber_male
ENSSDUG00000015380csde19661.111ENSHGLG00100004833-10061.111Heterocephalus_glaber_male
ENSSDUG00000015380csde110077.403ENSHGLG00100019438-10077.403Heterocephalus_glaber_male
ENSSDUG00000015380csde19963.092ENSHGLG00100002245-9964.068Heterocephalus_glaber_male
ENSSDUG00000015380csde19365.508ENSHGLG00100004195-10065.508Heterocephalus_glaber_male
ENSSDUG00000015380csde19666.222ENSHGLG00100006910-10066.222Heterocephalus_glaber_male
ENSSDUG00000015380csde110092.068ENSHCOG00000004158csde110092.068Hippocampus_comes
ENSSDUG00000015380csde110085.733ENSIPUG00000000355csde110085.733Ictalurus_punctatus
ENSSDUG00000015380csde110064.240ENSSTOG00000030994-10064.240Ictidomys_tridecemlineatus
ENSSDUG00000015380csde19356.830ENSSTOG00000032722-9956.830Ictidomys_tridecemlineatus
ENSSDUG00000015380csde19976.453ENSJJAG00000019571Csde110076.453Jaculus_jaculus
ENSSDUG00000015380csde110088.155ENSKMAG00000005685csde110088.875Kryptolebias_marmoratus
ENSSDUG00000015380csde110095.397ENSLBEG00000014770csde110095.397Labrus_bergylta
ENSSDUG00000015380csde110073.736ENSLACG00000018452CSDE19872.382Latimeria_chalumnae
ENSSDUG00000015380csde110083.814ENSLOCG00000010413csde110081.271Lepisosteus_oculatus
ENSSDUG00000015380csde110077.403ENSLAFG00000007150CSDE19677.403Loxodonta_africana
ENSSDUG00000015380csde110077.662ENSMFAG00000003674CSDE110077.662Macaca_fascicularis
ENSSDUG00000015380csde110077.662ENSMMUG00000001974CSDE110077.662Macaca_mulatta
ENSSDUG00000015380csde110077.662ENSMNEG00000045247CSDE19777.662Macaca_nemestrina
ENSSDUG00000015380csde110077.403ENSMLEG00000038673CSDE19873.826Mandrillus_leucophaeus
ENSSDUG00000015380csde110096.774ENSMAMG00000008821csde110096.774Mastacembelus_armatus
ENSSDUG00000015380csde110094.408ENSMZEG00005021675csde110094.408Maylandia_zebra
ENSSDUG00000015380csde110079.740ENSMGAG00000016381CSDE110079.740Meleagris_gallopavo
ENSSDUG00000015380csde19976.304ENSMAUG00000014031Csde110076.304Mesocricetus_auratus
ENSSDUG00000015380csde110077.792ENSMICG00000002050CSDE19974.833Microcebus_murinus
ENSSDUG00000015380csde110077.143ENSMOCG00000018960Csde110077.143Microtus_ochrogaster
ENSSDUG00000015380csde110095.839ENSMMOG00000015075csde110095.839Mola_mola
ENSSDUG00000015380csde110078.368ENSMODG00000004685CSDE110076.829Monodelphis_domestica
ENSSDUG00000015380csde110095.839ENSMALG00000007132csde110095.839Monopterus_albus
ENSSDUG00000015380csde110077.273MGP_CAROLIEiJ_G0025444Csde110084.106Mus_caroli
ENSSDUG00000015380csde110077.273ENSMUSG00000068823Csde19991.176Mus_musculus
ENSSDUG00000015380csde110077.273MGP_PahariEiJ_G0026888Csde110084.106Mus_pahari
ENSSDUG00000015380csde110077.273MGP_SPRETEiJ_G0026394Csde110091.176Mus_spretus
ENSSDUG00000015380csde19875.032ENSMPUG00000005753CSDE19975.871Mustela_putorius_furo
ENSSDUG00000015380csde110077.403ENSMLUG00000005681CSDE19477.403Myotis_lucifugus
ENSSDUG00000015380csde19976.155ENSNGAG00000021929Csde110076.155Nannospalax_galili
ENSSDUG00000015380csde19652.667ENSNGAG00000012599-10052.667Nannospalax_galili
ENSSDUG00000015380csde110094.408ENSNBRG00000020808csde110094.408Neolamprologus_brichardi
ENSSDUG00000015380csde110077.662ENSNLEG00000004842CSDE19777.662Nomascus_leucogenys
ENSSDUG00000015380csde19384.466ENSMEUG00000002677CSDE19584.466Notamacropus_eugenii
ENSSDUG00000015380csde19482.243ENSOPRG00000005002CSDE18271.739Ochotona_princeps
ENSSDUG00000015380csde19976.304ENSODEG00000007383-10076.304Octodon_degus
ENSSDUG00000015380csde19652.097ENSODEG00000005979-9852.097Octodon_degus
ENSSDUG00000015380csde19594.247ENSONIG00000009309csde110094.247Oreochromis_niloticus
ENSSDUG00000015380csde110079.661ENSOANG00000003346-8379.661Ornithorhynchus_anatinus
ENSSDUG00000015380csde110077.273ENSOCUG00000016438CSDE19873.709Oryctolagus_cuniculus
ENSSDUG00000015380csde110091.667ENSORLG00000000707csde110091.667Oryzias_latipes
ENSSDUG00000015380csde110089.277ENSORLG00020005148csde110091.422Oryzias_latipes_hni
ENSSDUG00000015380csde110091.536ENSORLG00015019415csde110091.536Oryzias_latipes_hsok
ENSSDUG00000015380csde110091.667ENSOMEG00000015656csde110091.667Oryzias_melastigma
ENSSDUG00000015380csde110077.792ENSOGAG00000012127CSDE19477.792Otolemur_garnettii
ENSSDUG00000015380csde110077.403ENSOARG00000020034CSDE19477.403Ovis_aries
ENSSDUG00000015380csde110077.662ENSPPAG00000025861CSDE110077.662Pan_paniscus
ENSSDUG00000015380csde110077.922ENSPPRG00000006747CSDE19874.296Panthera_pardus
ENSSDUG00000015380csde110077.922ENSPTIG00000015468CSDE110075.732Panthera_tigris_altaica
ENSSDUG00000015380csde110077.662ENSPTRG00000033721CSDE110075.488Pan_troglodytes
ENSSDUG00000015380csde110077.662ENSPANG00000018873CSDE110077.662Papio_anubis
ENSSDUG00000015380csde110087.109ENSPKIG00000009459csde110087.109Paramormyrops_kingsleyae
ENSSDUG00000015380csde19677.042ENSPSIG00000003823CSDE19976.220Pelodiscus_sinensis
ENSSDUG00000015380csde110091.547ENSPMGG00000000772csde110091.547Periophthalmus_magnuspinnatus
ENSSDUG00000015380csde19976.602ENSPEMG00000020357-10076.602Peromyscus_maniculatus_bairdii
ENSSDUG00000015380csde110076.030ENSPCIG00000022587CSDE110076.829Phascolarctos_cinereus
ENSSDUG00000015380csde19791.291ENSPFOG00000012664csde110091.783Poecilia_formosa
ENSSDUG00000015380csde19586.329ENSPLAG00000017680csde19386.329Poecilia_latipinna
ENSSDUG00000015380csde19586.482ENSPMEG00000005094csde19586.482Poecilia_mexicana
ENSSDUG00000015380csde110090.214ENSPREG00000011631csde110091.106Poecilia_reticulata
ENSSDUG00000015380csde110074.532ENSPPYG00000000996CSDE110075.366Pongo_abelii
ENSSDUG00000015380csde19683.178ENSPCAG00000014368CSDE19477.603Procavia_capensis
ENSSDUG00000015380csde19069.888ENSPCOG00000008223-9269.888Propithecus_coquereli
ENSSDUG00000015380csde110077.922ENSPCOG00000017893CSDE110077.922Propithecus_coquereli
ENSSDUG00000015380csde110072.597ENSPVAG00000008225CSDE19572.597Pteropus_vampyrus
ENSSDUG00000015380csde110094.408ENSPNYG00000013745csde110094.408Pundamilia_nyererei
ENSSDUG00000015380csde110087.808ENSPNAG00000001958csde110087.808Pygocentrus_nattereri
ENSSDUG00000015380csde110074.157ENSRNOG00000061058Csde110075.000Rattus_norvegicus
ENSSDUG00000015380csde110074.708ENSRBIG00000038088-10074.708Rhinopithecus_bieti
ENSSDUG00000015380csde110073.247ENSRBIG00000038966-9869.683Rhinopithecus_bieti
ENSSDUG00000015380csde110077.662ENSRROG00000043101CSDE19777.662Rhinopithecus_roxellana
ENSSDUG00000015380csde110077.532ENSSBOG00000035592CSDE19577.532Saimiri_boliviensis_boliviensis
ENSSDUG00000015380csde110079.091ENSSHAG00000009831CSDE110079.091Sarcophilus_harrisii
ENSSDUG00000015380csde110095.238ENSSFOG00015007498csde19395.238Scleropages_formosus
ENSSDUG00000015380csde110096.094ENSSMAG00000007203csde110096.094Scophthalmus_maximus
ENSSDUG00000015380csde1100100.000ENSSLDG00000008819csde1100100.000Seriola_lalandi_dorsalis
ENSSDUG00000015380csde110077.273ENSSARG00000000738CSDE19477.273Sorex_araneus
ENSSDUG00000015380csde110080.234ENSSPUG00000008714CSDE110080.234Sphenodon_punctatus
ENSSDUG00000015380csde110096.875ENSSPAG00000000716csde110096.875Stegastes_partitus
ENSSDUG00000015380csde110078.052ENSSSCG00000006752CSDE110078.052Sus_scrofa
ENSSDUG00000015380csde110075.561ENSTGUG00000000972CSDE110076.370Taeniopygia_guttata
ENSSDUG00000015380csde110087.891ENSTRUG00000007996csde110087.891Takifugu_rubripes
ENSSDUG00000015380csde19384.674ENSTNIG00000010878csde110088.214Tetraodon_nigroviridis
ENSSDUG00000015380csde19279.755ENSTBEG00000011880-6476.250Tupaia_belangeri
ENSSDUG00000015380csde110077.143ENSTTRG00000015583CSDE19477.143Tursiops_truncatus
ENSSDUG00000015380csde19281.029ENSUAMG00000021779-9981.029Ursus_americanus
ENSSDUG00000015380csde18773.558ENSUAMG00000024289-9973.558Ursus_americanus
ENSSDUG00000015380csde110071.558ENSUMAG00000009720-9771.558Ursus_maritimus
ENSSDUG00000015380csde19273.460ENSUMAG00000011714-9973.460Ursus_maritimus
ENSSDUG00000015380csde110080.233ENSVPAG00000000749CSDE17980.233Vicugna_pacos
ENSSDUG00000015380csde19373.508ENSVVUG00000009890CSDE19474.504Vulpes_vulpes
ENSSDUG00000015380csde110076.244ENSXETG00000021448csde110076.914Xenopus_tropicalis
ENSSDUG00000015380csde19494.989ENSXCOG00000000035csde19985.996Xiphophorus_couchianus
ENSSDUG00000015380csde19892.971ENSXMAG00000009080csde110092.102Xiphophorus_maculatus

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