EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000015428 (Gene tree)
Gene ID: 111228481
Gene Symbol: prpf18
Alias: zgc:91830
Full Name: pre-mRNA processing factor 18
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 7440 bases
Position: chrBDQW01000219.1:4420268-4427707
Accession: 111228481
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000021268	PRP4	PF08799.11	2.4e-13	1	1
ENSSDUP00000021241	PRP4	PF08799.11	2.6e-13	1	1
ENSSDUP00000021220	PRP4	PF08799.11	2.7e-13	1	1
ENSSDUP00000021268	Prp18	PF02840.15	4e-62	1	1
ENSSDUP00000021241	Prp18	PF02840.15	4.6e-62	1	1
ENSSDUP00000021220	Prp18	PF02840.15	4.7e-62	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000021632	-	2514	XM_022754376	ENSSDUP00000021241	341 (aa)	XP_022610097	UPI000BBF114D
ENSSDUT00000021611	-	2541	XM_022754375	ENSSDUP00000021220	350 (aa)	XP_022610096	UPI000BBE7873
ENSSDUT00000021660	-	2436	-	ENSSDUP00000021268	315 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000015428's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000015428's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000015428	prpf18	100	85.380	ENSG00000165630	PRPF18	100	85.380	Homo_sapiens
ENSSDUG00000015428	prpf18	100	98.286	ENSAPOG00000024177	prpf18	100	98.286	Acanthochromis_polyacanthus
ENSSDUG00000015428	prpf18	100	84.795	ENSAMEG00000013591	-	100	84.795	Ailuropoda_melanoleuca
ENSSDUG00000015428	prpf18	100	96.188	ENSACIG00000001186	prpf18	100	96.188	Amphilophus_citrinellus
ENSSDUG00000015428	prpf18	98	97.904	ENSAOCG00000006572	prpf18	94	97.661	Amphiprion_ocellaris
ENSSDUG00000015428	prpf18	100	97.947	ENSAPEG00000004564	prpf18	100	97.947	Amphiprion_percula
ENSSDUG00000015428	prpf18	100	97.654	ENSATEG00000000303	prpf18	100	97.654	Anabas_testudineus
ENSSDUG00000015428	prpf18	99	82.353	ENSAPLG00000003387	-	99	82.353	Anas_platyrhynchos
ENSSDUG00000015428	prpf18	100	84.302	ENSACAG00000000818	-	100	84.302	Anolis_carolinensis
ENSSDUG00000015428	prpf18	100	85.088	ENSANAG00000037445	-	100	85.088	Aotus_nancymaae
ENSSDUG00000015428	prpf18	100	95.308	ENSACLG00000026296	prpf18	100	95.308	Astatotilapia_calliptera
ENSSDUG00000015428	prpf18	100	90.571	ENSAMXG00000012848	prpf18	100	90.571	Astyanax_mexicanus
ENSSDUG00000015428	prpf18	100	84.503	ENSBTAG00000017244	PRPF18	100	84.503	Bos_taurus
ENSSDUG00000015428	prpf18	98	40.517	WBGene00009320	F32B6.3	97	39.831	Caenorhabditis_elegans
ENSSDUG00000015428	prpf18	100	85.088	ENSCJAG00000009432	-	100	85.088	Callithrix_jacchus
ENSSDUG00000015428	prpf18	100	84.795	ENSCAFG00000004735	-	100	84.795	Canis_familiaris
ENSSDUG00000015428	prpf18	100	84.795	ENSCAFG00020007712	-	100	84.795	Canis_lupus_dingo
ENSSDUG00000015428	prpf18	100	84.503	ENSCHIG00000000499	-	100	84.503	Capra_hircus
ENSSDUG00000015428	prpf18	100	84.795	ENSTSYG00000003517	-	100	84.795	Carlito_syrichta
ENSSDUG00000015428	prpf18	100	85.380	ENSCPOG00000021069	-	100	85.380	Cavia_porcellus
ENSSDUG00000015428	prpf18	100	85.088	ENSCCAG00000036822	-	100	85.088	Cebus_capucinus
ENSSDUG00000015428	prpf18	100	74.561	ENSCATG00000016633	-	100	74.561	Cercocebus_atys
ENSSDUG00000015428	prpf18	100	84.795	ENSCLAG00000011770	-	100	84.795	Chinchilla_lanigera
ENSSDUG00000015428	prpf18	100	83.761	ENSCSAG00000013109	-	100	83.761	Chlorocebus_sabaeus
ENSSDUG00000015428	prpf18	100	80.337	ENSCPBG00000003100	-	100	81.180	Chrysemys_picta_bellii
ENSSDUG00000015428	prpf18	99	56.851	ENSCING00000020481	-	97	56.851	Ciona_intestinalis
ENSSDUG00000015428	prpf18	99	56.395	ENSCSAVG00000010546	-	99	55.685	Ciona_savignyi
ENSSDUG00000015428	prpf18	100	85.380	ENSCANG00000034900	-	100	85.380	Colobus_angolensis_palliatus
ENSSDUG00000015428	prpf18	100	84.795	ENSCGRG00001023665	Prpf18	100	84.795	Cricetulus_griseus_chok1gshd
ENSSDUG00000015428	prpf18	100	84.795	ENSCGRG00000014690	Prpf18	100	84.795	Cricetulus_griseus_crigri
ENSSDUG00000015428	prpf18	100	93.255	ENSCSEG00000005536	prpf18	99	93.255	Cynoglossus_semilaevis
ENSSDUG00000015428	prpf18	100	93.548	ENSCVAG00000012401	prpf18	100	93.548	Cyprinodon_variegatus
ENSSDUG00000015428	prpf18	100	91.228	ENSDARG00000058306	prpf18	100	91.228	Danio_rerio
ENSSDUG00000015428	prpf18	100	85.088	ENSDNOG00000035607	-	100	85.088	Dasypus_novemcinctus
ENSSDUG00000015428	prpf18	100	84.503	ENSDORG00000000858	Prpf18	100	84.503	Dipodomys_ordii
ENSSDUG00000015428	prpf18	99	52.663	FBgn0027784	Prp18	98	51.775	Drosophila_melanogaster
ENSSDUG00000015428	prpf18	100	76.608	ENSETEG00000015060	-	100	76.608	Echinops_telfairi
ENSSDUG00000015428	prpf18	100	69.741	ENSEBUG00000016502	prpf18	99	68.876	Eptatretus_burgeri
ENSSDUG00000015428	prpf18	100	85.088	ENSEASG00005019373	-	100	85.088	Equus_asinus_asinus
ENSSDUG00000015428	prpf18	100	85.088	ENSECAG00000006997	PRPF18	100	85.088	Equus_caballus
ENSSDUG00000015428	prpf18	92	51.582	ENSEEUG00000001171	-	100	51.582	Erinaceus_europaeus
ENSSDUG00000015428	prpf18	100	90.379	ENSELUG00000022190	prpf18	100	90.379	Esox_lucius
ENSSDUG00000015428	prpf18	100	84.503	ENSFCAG00000004436	-	100	84.503	Felis_catus
ENSSDUG00000015428	prpf18	93	80.000	ENSFALG00000001912	-	97	80.308	Ficedula_albicollis
ENSSDUG00000015428	prpf18	99	58.261	ENSFDAG00000010713	-	97	58.261	Fukomys_damarensis
ENSSDUG00000015428	prpf18	93	89.116	ENSFDAG00000014026	-	100	87.188	Fukomys_damarensis
ENSSDUG00000015428	prpf18	87	95.238	ENSFHEG00000020125	prpf18	98	95.131	Fundulus_heteroclitus
ENSSDUG00000015428	prpf18	99	88.235	ENSGMOG00000012210	prpf18	99	88.235	Gadus_morhua
ENSSDUG00000015428	prpf18	100	83.333	ENSGALG00000043593	-	100	83.333	Gallus_gallus
ENSSDUG00000015428	prpf18	100	93.255	ENSGAFG00000006034	prpf18	100	93.255	Gambusia_affinis
ENSSDUG00000015428	prpf18	100	93.548	ENSGACG00000012232	prpf18	100	93.548	Gasterosteus_aculeatus
ENSSDUG00000015428	prpf18	100	83.918	ENSGAGG00000016878	-	100	83.918	Gopherus_agassizii
ENSSDUG00000015428	prpf18	92	84.494	ENSGGOG00000025188	-	96	84.494	Gorilla_gorilla
ENSSDUG00000015428	prpf18	100	95.429	ENSHBUG00000010264	prpf18	100	95.429	Haplochromis_burtoni
ENSSDUG00000015428	prpf18	100	84.795	ENSHGLG00000018534	PRPF18	100	84.795	Heterocephalus_glaber_female
ENSSDUG00000015428	prpf18	93	88.776	ENSHGLG00100012161	-	98	86.875	Heterocephalus_glaber_male
ENSSDUG00000015428	prpf18	100	97.654	ENSHCOG00000015987	prpf18	100	97.654	Hippocampus_comes
ENSSDUG00000015428	prpf18	100	83.286	ENSIPUG00000007432	prpf18	100	83.853	Ictalurus_punctatus
ENSSDUG00000015428	prpf18	100	84.503	ENSSTOG00000008735	-	100	84.503	Ictidomys_tridecemlineatus
ENSSDUG00000015428	prpf18	100	85.380	ENSJJAG00000024041	-	100	85.380	Jaculus_jaculus
ENSSDUG00000015428	prpf18	100	63.265	ENSJJAG00000015191	-	100	63.265	Jaculus_jaculus
ENSSDUG00000015428	prpf18	100	93.548	ENSKMAG00000012124	prpf18	100	93.548	Kryptolebias_marmoratus
ENSSDUG00000015428	prpf18	97	93.072	ENSLBEG00000028466	prpf18	98	93.072	Labrus_bergylta
ENSSDUG00000015428	prpf18	100	83.918	ENSLACG00000009885	prpf18	100	84.795	Latimeria_chalumnae
ENSSDUG00000015428	prpf18	100	88.889	ENSLOCG00000016736	prpf18	100	88.889	Lepisosteus_oculatus
ENSSDUG00000015428	prpf18	100	85.380	ENSLAFG00000007753	-	100	85.380	Loxodonta_africana
ENSSDUG00000015428	prpf18	100	85.380	ENSMFAG00000000540	-	100	85.380	Macaca_fascicularis
ENSSDUG00000015428	prpf18	100	85.380	ENSMMUG00000015071	PRPF18	100	85.380	Macaca_mulatta
ENSSDUG00000015428	prpf18	100	85.380	ENSMNEG00000024679	-	100	85.380	Macaca_nemestrina
ENSSDUG00000015428	prpf18	100	70.175	ENSMLEG00000031715	-	100	70.175	Mandrillus_leucophaeus
ENSSDUG00000015428	prpf18	100	96.857	ENSMAMG00000006610	prpf18	100	96.857	Mastacembelus_armatus
ENSSDUG00000015428	prpf18	100	95.429	ENSMZEG00005019392	prpf18	100	95.429	Maylandia_zebra
ENSSDUG00000015428	prpf18	100	83.333	ENSMGAG00000005023	-	100	83.333	Meleagris_gallopavo
ENSSDUG00000015428	prpf18	100	85.673	ENSMICG00000006572	-	100	85.673	Microcebus_murinus
ENSSDUG00000015428	prpf18	100	85.380	ENSMOCG00000021468	Prpf18	100	85.380	Microtus_ochrogaster
ENSSDUG00000015428	prpf18	100	95.015	ENSMMOG00000013012	prpf18	100	95.015	Mola_mola
ENSSDUG00000015428	prpf18	100	77.485	ENSMODG00000024043	-	100	77.485	Monodelphis_domestica
ENSSDUG00000015428	prpf18	99	78.448	ENSMODG00000016902	-	95	78.448	Monodelphis_domestica
ENSSDUG00000015428	prpf18	50	84.076	ENSMODG00000024051	-	97	84.967	Monodelphis_domestica
ENSSDUG00000015428	prpf18	100	87.791	ENSMALG00000005486	prpf18	100	88.081	Monopterus_albus
ENSSDUG00000015428	prpf18	100	84.795	MGP_CAROLIEiJ_G0023143	Prpf18	100	95.890	Mus_caroli
ENSSDUG00000015428	prpf18	100	85.088	ENSMUSG00000039449	Prpf18	100	95.890	Mus_musculus
ENSSDUG00000015428	prpf18	100	85.088	MGP_PahariEiJ_G0019203	Prpf18	100	95.890	Mus_pahari
ENSSDUG00000015428	prpf18	100	84.795	MGP_SPRETEiJ_G0024061	Prpf18	100	95.890	Mus_spretus
ENSSDUG00000015428	prpf18	100	84.503	ENSMPUG00000000938	-	100	84.503	Mustela_putorius_furo
ENSSDUG00000015428	prpf18	100	84.503	ENSMLUG00000009200	-	100	84.503	Myotis_lucifugus
ENSSDUG00000015428	prpf18	100	85.380	ENSNGAG00000012500	-	100	85.380	Nannospalax_galili
ENSSDUG00000015428	prpf18	100	66.667	ENSNGAG00000023550	-	83	82.328	Nannospalax_galili
ENSSDUG00000015428	prpf18	100	95.601	ENSNBRG00000001778	prpf18	100	95.601	Neolamprologus_brichardi
ENSSDUG00000015428	prpf18	100	85.380	ENSNLEG00000012186	-	100	85.380	Nomascus_leucogenys
ENSSDUG00000015428	prpf18	82	73.359	ENSMEUG00000005032	-	75	71.815	Notamacropus_eugenii
ENSSDUG00000015428	prpf18	77	66.038	ENSOPRG00000002153	-	100	66.038	Ochotona_princeps
ENSSDUG00000015428	prpf18	100	84.503	ENSODEG00000003770	-	100	84.503	Octodon_degus
ENSSDUG00000015428	prpf18	98	95.210	ENSONIG00000014854	prpf18	96	95.210	Oreochromis_niloticus
ENSSDUG00000015428	prpf18	100	84.795	ENSOANG00000015404	-	100	84.795	Ornithorhynchus_anatinus
ENSSDUG00000015428	prpf18	100	85.088	ENSOCUG00000027756	-	96	85.933	Oryctolagus_cuniculus
ENSSDUG00000015428	prpf18	100	94.286	ENSORLG00000010293	prpf18	100	94.286	Oryzias_latipes
ENSSDUG00000015428	prpf18	100	94.428	ENSORLG00020001530	prpf18	100	94.428	Oryzias_latipes_hni
ENSSDUG00000015428	prpf18	100	94.135	ENSORLG00015013705	prpf18	100	94.135	Oryzias_latipes_hsok
ENSSDUG00000015428	prpf18	100	95.308	ENSOMEG00000009167	prpf18	100	95.308	Oryzias_melastigma
ENSSDUG00000015428	prpf18	100	84.503	ENSOGAG00000007294	-	100	84.503	Otolemur_garnettii
ENSSDUG00000015428	prpf18	100	82.906	ENSOARG00000006243	-	100	82.906	Ovis_aries
ENSSDUG00000015428	prpf18	100	85.380	ENSPPAG00000041959	-	100	85.380	Pan_paniscus
ENSSDUG00000015428	prpf18	100	84.503	ENSPPRG00000000107	-	100	84.503	Panthera_pardus
ENSSDUG00000015428	prpf18	100	84.503	ENSPTIG00000021094	-	100	84.503	Panthera_tigris_altaica
ENSSDUG00000015428	prpf18	100	85.380	ENSPTRG00000002306	PRPF18	100	85.380	Pan_troglodytes
ENSSDUG00000015428	prpf18	100	85.088	ENSPANG00000023346	-	100	85.088	Papio_anubis
ENSSDUG00000015428	prpf18	100	88.034	ENSPKIG00000014128	prpf18	96	88.034	Paramormyrops_kingsleyae
ENSSDUG00000015428	prpf18	100	83.918	ENSPSIG00000016064	-	100	83.918	Pelodiscus_sinensis
ENSSDUG00000015428	prpf18	100	86.842	ENSPMGG00000016486	prpf18	100	86.842	Periophthalmus_magnuspinnatus
ENSSDUG00000015428	prpf18	100	85.088	ENSPEMG00000013704	Prpf18	100	85.088	Peromyscus_maniculatus_bairdii
ENSSDUG00000015428	prpf18	100	74.063	ENSPMAG00000000204	prpf18	100	74.063	Petromyzon_marinus
ENSSDUG00000015428	prpf18	92	84.177	ENSPCIG00000012963	-	99	84.177	Phascolarctos_cinereus
ENSSDUG00000015428	prpf18	100	92.000	ENSPFOG00000017611	prpf18	100	92.000	Poecilia_formosa
ENSSDUG00000015428	prpf18	100	92.375	ENSPLAG00000000369	prpf18	100	92.375	Poecilia_latipinna
ENSSDUG00000015428	prpf18	100	92.669	ENSPMEG00000005183	prpf18	100	92.669	Poecilia_mexicana
ENSSDUG00000015428	prpf18	100	92.375	ENSPREG00000015232	prpf18	100	92.375	Poecilia_reticulata
ENSSDUG00000015428	prpf18	100	85.088	ENSPPYG00000002101	PRPF18	100	85.088	Pongo_abelii
ENSSDUG00000015428	prpf18	100	67.544	ENSPCAG00000010833	-	100	67.544	Procavia_capensis
ENSSDUG00000015428	prpf18	100	87.025	ENSPCOG00000013057	-	100	87.025	Propithecus_coquereli
ENSSDUG00000015428	prpf18	100	51.754	ENSPVAG00000002947	-	100	51.754	Pteropus_vampyrus
ENSSDUG00000015428	prpf18	100	95.714	ENSPNYG00000003554	prpf18	100	95.714	Pundamilia_nyererei
ENSSDUG00000015428	prpf18	100	90.028	ENSPNAG00000023151	prpf18	100	90.028	Pygocentrus_nattereri
ENSSDUG00000015428	prpf18	100	84.795	ENSRNOG00000018396	Prpf18	100	84.795	Rattus_norvegicus
ENSSDUG00000015428	prpf18	100	85.673	ENSRBIG00000028028	-	100	85.673	Rhinopithecus_bieti
ENSSDUG00000015428	prpf18	100	85.380	ENSRROG00000040695	-	100	85.380	Rhinopithecus_roxellana
ENSSDUG00000015428	prpf18	100	85.088	ENSSBOG00000034482	-	100	85.088	Saimiri_boliviensis_boliviensis
ENSSDUG00000015428	prpf18	100	71.053	ENSSHAG00000009669	-	100	71.053	Sarcophilus_harrisii
ENSSDUG00000015428	prpf18	100	85.088	ENSSHAG00000016463	-	100	85.088	Sarcophilus_harrisii
ENSSDUG00000015428	prpf18	98	86.087	ENSSFOG00015022118	prpf18	100	80.980	Scleropages_formosus
ENSSDUG00000015428	prpf18	74	50.215	ENSSFOG00015021154	-	89	48.498	Scleropages_formosus
ENSSDUG00000015428	prpf18	100	94.286	ENSSMAG00000005308	prpf18	100	94.286	Scophthalmus_maximus
ENSSDUG00000015428	prpf18	100	99.714	ENSSLDG00000023989	prpf18	100	99.714	Seriola_lalandi_dorsalis
ENSSDUG00000015428	prpf18	100	56.433	ENSSARG00000005307	-	100	56.433	Sorex_araneus
ENSSDUG00000015428	prpf18	100	84.211	ENSSPUG00000002619	-	100	84.211	Sphenodon_punctatus
ENSSDUG00000015428	prpf18	100	98.571	ENSSPAG00000019502	prpf18	100	98.571	Stegastes_partitus
ENSSDUG00000015428	prpf18	100	84.795	ENSSSCG00000026354	-	100	84.795	Sus_scrofa
ENSSDUG00000015428	prpf18	100	83.041	ENSTGUG00000002286	-	100	83.041	Taeniopygia_guttata
ENSSDUG00000015428	prpf18	100	90.029	ENSTRUG00000011278	prpf18	100	90.029	Takifugu_rubripes
ENSSDUG00000015428	prpf18	100	91.202	ENSTNIG00000000911	prpf18	100	91.202	Tetraodon_nigroviridis
ENSSDUG00000015428	prpf18	80	98.718	ENSTBEG00000013011	-	79	98.718	Tupaia_belangeri
ENSSDUG00000015428	prpf18	100	85.673	ENSTTRG00000011117	PRPF18	100	85.673	Tursiops_truncatus
ENSSDUG00000015428	prpf18	93	88.776	ENSUAMG00000001815	-	93	87.781	Ursus_americanus
ENSSDUG00000015428	prpf18	100	80.117	ENSUMAG00000012329	-	100	80.117	Ursus_maritimus
ENSSDUG00000015428	prpf18	100	79.240	ENSVPAG00000011486	-	100	79.240	Vicugna_pacos
ENSSDUG00000015428	prpf18	100	84.795	ENSVVUG00000005453	-	100	84.795	Vulpes_vulpes
ENSSDUG00000015428	prpf18	100	75.942	ENSXETG00000024057	prpf18	100	75.652	Xenopus_tropicalis
ENSSDUG00000015428	prpf18	100	92.711	ENSXCOG00000020414	prpf18	100	92.711	Xiphophorus_couchianus
ENSSDUG00000015428	prpf18	100	93.255	ENSXMAG00000004713	prpf18	91	93.255	Xiphophorus_maculatus