EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000015456 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 6007 bases
Position: chrBDQW01000169.1:5486855-5492861
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000021217	zf-C2H2	PF00096.26	2.5e-19	1	4
ENSSDUP00000021217	zf-C2H2	PF00096.26	2.5e-19	2	4
ENSSDUP00000021217	zf-C2H2	PF00096.26	2.5e-19	3	4
ENSSDUP00000021217	zf-C2H2	PF00096.26	2.5e-19	4	4
ENSSDUP00000021217	zf-met	PF12874.7	9.5e-08	1	3
ENSSDUP00000021217	zf-met	PF12874.7	9.5e-08	2	3
ENSSDUP00000021217	zf-met	PF12874.7	9.5e-08	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000021608	-	5137	-	ENSSDUP00000021217	479 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000015456's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000015456's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000015456	-	57	38.356	ENSSDUG00000007336	-	92	38.356
ENSSDUG00000015456	-	52	38.182	ENSSDUG00000005401	-	88	38.760
ENSSDUG00000015456	-	53	44.667	ENSSDUG00000004835	-	69	45.890
ENSSDUG00000015456	-	56	39.474	ENSSDUG00000009421	-	68	47.541
ENSSDUG00000015456	-	50	38.298	ENSSDUG00000000695	-	74	38.298
ENSSDUG00000015456	-	57	38.732	ENSSDUG00000009439	-	89	38.732

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000015456	-	100	76.701	ENSATEG00000023773	-	100	76.495	Anabas_testudineus
ENSSDUG00000015456	-	99	56.667	ENSCSEG00000011817	-	99	56.458	Cynoglossus_semilaevis
ENSSDUG00000015456	-	51	39.130	ENSDARG00000112103	si:dkey-16p19.1	77	44.643	Danio_rerio
ENSSDUG00000015456	-	50	32.661	ENSDARG00000103721	si:dkey-122c11.7	69	40.260	Danio_rerio
ENSSDUG00000015456	-	50	34.194	ENSDARG00000111550	CABZ01002702.1	72	41.667	Danio_rerio
ENSSDUG00000015456	-	96	60.521	ENSFHEG00000015400	-	95	60.087	Fundulus_heteroclitus
ENSSDUG00000015456	-	96	63.636	ENSGAFG00000013839	-	98	63.636	Gambusia_affinis
ENSSDUG00000015456	-	57	33.735	ENSKMAG00000011441	-	82	35.669	Kryptolebias_marmoratus
ENSSDUG00000015456	-	97	73.718	ENSMAMG00000020468	-	99	73.504	Mastacembelus_armatus
ENSSDUG00000015456	-	73	88.000	ENSNBRG00000019881	-	99	88.000	Neolamprologus_brichardi
ENSSDUG00000015456	-	64	51.456	ENSORLG00015013828	-	93	50.162	Oryzias_latipes_hsok
ENSSDUG00000015456	-	96	56.182	ENSOMEG00000005928	-	97	55.965	Oryzias_melastigma
ENSSDUG00000015456	-	60	72.826	ENSPFOG00000005998	-	94	61.564	Poecilia_formosa
ENSSDUG00000015456	-	56	42.857	ENSPFOG00000003366	-	70	42.857	Poecilia_formosa
ENSSDUG00000015456	-	96	62.987	ENSPLAG00000001674	-	96	62.987	Poecilia_latipinna
ENSSDUG00000015456	-	98	62.316	ENSPMEG00000013200	-	99	62.316	Poecilia_mexicana
ENSSDUG00000015456	-	97	74.678	ENSSMAG00000002598	-	99	74.464	Scophthalmus_maximus
ENSSDUG00000015456	-	100	76.091	ENSSPAG00000017203	-	100	75.884	Stegastes_partitus
ENSSDUG00000015456	-	96	64.668	ENSXMAG00000021195	-	96	64.454	Xiphophorus_maculatus