EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000015540 (Gene tree)
Gene ID: 111217301
Gene Symbol: -
Alias: -
Full Name: poly(rC)-binding protein 4-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 22096 bases
Position: chrBDQW01000043.1:2792734-2814829
Accession: 111217301
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000021374	KH_1	PF00013.29	1e-40	1	2
ENSSDUP00000021374	KH_1	PF00013.29	1e-40	2	2
ENSSDUP00000021374	KH_2	PF07650.17	1e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000021766	-	1284	XM_022739098	ENSSDUP00000021374	427 (aa)	XP_022594819	-

Gene Model

Click here to download ENSSDUG00000015540's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000015540's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000015540	-	74	55.655	ENSSDUG00000018636	PCBP2	98	55.655
ENSSDUG00000015540	-	85	54.167	ENSSDUG00000021325	pcbp2	98	54.810
ENSSDUG00000015540	-	71	60.550	ENSSDUG00000011608	pcbp3	96	60.550
ENSSDUG00000015540	-	96	76.019	ENSSDUG00000017719	pcbp4	98	76.077
ENSSDUG00000015540	-	84	52.561	ENSSDUG00000019371	zgc:110045	99	52.846
ENSSDUG00000015540	-	71	58.075	ENSSDUG00000008502	-	97	55.763

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000015540	-	98	53.812	ENSG00000090097	PCBP4	97	63.804	Homo_sapiens
ENSSDUG00000015540	-	100	93.946	ENSAPOG00000009897	-	98	93.946	Acanthochromis_polyacanthus
ENSSDUG00000015540	-	51	87.500	ENSAPOG00000018462	-	67	87.500	Acanthochromis_polyacanthus
ENSSDUG00000015540	-	97	54.462	ENSAMEG00000009211	PCBP4	97	54.897	Ailuropoda_melanoleuca
ENSSDUG00000015540	-	95	97.291	ENSACIG00000020434	-	98	97.291	Amphilophus_citrinellus
ENSSDUG00000015540	-	94	74.645	ENSACIG00000015264	pcbp4	94	74.208	Amphilophus_citrinellus
ENSSDUG00000015540	-	90	64.194	ENSAOCG00000006924	-	100	65.217	Amphiprion_ocellaris
ENSSDUG00000015540	-	100	97.897	ENSAOCG00000021366	-	100	97.897	Amphiprion_ocellaris
ENSSDUG00000015540	-	94	76.513	ENSAPEG00000023157	pcbp4	99	76.998	Amphiprion_percula
ENSSDUG00000015540	-	94	68.305	ENSAPEG00000009555	-	78	93.684	Amphiprion_percula
ENSSDUG00000015540	-	94	70.316	ENSATEG00000008529	pcbp4	94	68.372	Anabas_testudineus
ENSSDUG00000015540	-	100	94.292	ENSATEG00000006511	-	100	94.292	Anabas_testudineus
ENSSDUG00000015540	-	97	58.676	ENSACAG00000011701	PCBP4	97	58.447	Anolis_carolinensis
ENSSDUG00000015540	-	98	54.649	ENSANAG00000023072	PCBP4	99	55.079	Aotus_nancymaae
ENSSDUG00000015540	-	100	69.710	ENSACLG00000013348	pcbp4	96	69.917	Astatotilapia_calliptera
ENSSDUG00000015540	-	100	96.037	ENSACLG00000025246	-	100	96.037	Astatotilapia_calliptera
ENSSDUG00000015540	-	100	79.341	ENSAMXG00000033125	pcbp4	98	79.560	Astyanax_mexicanus
ENSSDUG00000015540	-	97	54.233	ENSBTAG00000018622	PCBP4	97	54.897	Bos_taurus
ENSSDUG00000015540	-	98	54.036	ENSCJAG00000005783	PCBP4	99	54.688	Callithrix_jacchus
ENSSDUG00000015540	-	97	54.462	ENSCAFG00000010019	PCBP4	97	54.897	Canis_familiaris
ENSSDUG00000015540	-	97	54.462	ENSCAFG00020022361	PCBP4	97	54.897	Canis_lupus_dingo
ENSSDUG00000015540	-	97	54.608	ENSCHIG00000012918	PCBP4	97	55.275	Capra_hircus
ENSSDUG00000015540	-	97	55.324	ENSTSYG00000008765	PCBP4	97	55.760	Carlito_syrichta
ENSSDUG00000015540	-	97	54.233	ENSCAPG00000005895	PCBP4	97	54.670	Cavia_aperea
ENSSDUG00000015540	-	97	54.233	ENSCPOG00000014617	PCBP4	97	54.897	Cavia_porcellus
ENSSDUG00000015540	-	98	54.036	ENSCCAG00000033268	PCBP4	99	54.688	Cebus_capucinus
ENSSDUG00000015540	-	98	54.505	ENSCATG00000032034	PCBP4	99	54.933	Cercocebus_atys
ENSSDUG00000015540	-	97	54.483	ENSCLAG00000008356	PCBP4	97	55.149	Chinchilla_lanigera
ENSSDUG00000015540	-	98	54.036	ENSCSAG00000013913	PCBP4	99	54.688	Chlorocebus_sabaeus
ENSSDUG00000015540	-	97	57.763	ENSCPBG00000016554	PCBP4	95	57.763	Chrysemys_picta_bellii
ENSSDUG00000015540	-	98	54.505	ENSCANG00000038865	PCBP4	99	54.933	Colobus_angolensis_palliatus
ENSSDUG00000015540	-	97	55.478	ENSCGRG00001014953	Pcbp4	97	56.148	Cricetulus_griseus_chok1gshd
ENSSDUG00000015540	-	97	55.478	ENSCGRG00000008617	Pcbp4	97	56.148	Cricetulus_griseus_crigri
ENSSDUG00000015540	-	100	86.728	ENSCSEG00000021041	PCBP4	100	86.728	Cynoglossus_semilaevis
ENSSDUG00000015540	-	100	65.417	ENSCSEG00000014487	pcbp4	95	66.736	Cynoglossus_semilaevis
ENSSDUG00000015540	-	100	92.466	ENSCVAG00000013090	-	100	92.272	Cyprinodon_variegatus
ENSSDUG00000015540	-	94	69.065	ENSCVAG00000003674	pcbp4	95	68.246	Cyprinodon_variegatus
ENSSDUG00000015540	-	100	77.753	ENSDARG00000024276	pcbp4	100	77.652	Danio_rerio
ENSSDUG00000015540	-	94	54.167	ENSDNOG00000033951	PCBP4	87	50.602	Dasypus_novemcinctus
ENSSDUG00000015540	-	97	54.005	ENSDORG00000000573	Pcbp4	97	54.670	Dipodomys_ordii
ENSSDUG00000015540	-	67	56.731	ENSETEG00000001778	PCBP4	96	56.731	Echinops_telfairi
ENSSDUG00000015540	-	97	53.776	ENSEASG00005012889	PCBP4	97	54.442	Equus_asinus_asinus
ENSSDUG00000015540	-	97	53.776	ENSECAG00000024218	PCBP4	97	54.442	Equus_caballus
ENSSDUG00000015540	-	100	83.628	ENSELUG00000001870	-	98	82.522	Esox_lucius
ENSSDUG00000015540	-	100	71.949	ENSELUG00000018204	pcbp4	98	72.414	Esox_lucius
ENSSDUG00000015540	-	97	54.233	ENSFCAG00000009148	PCBP4	97	54.897	Felis_catus
ENSSDUG00000015540	-	96	54.651	ENSFALG00000008831	PCBP4	95	55.116	Ficedula_albicollis
ENSSDUG00000015540	-	97	54.358	ENSFDAG00000012692	PCBP4	99	54.359	Fukomys_damarensis
ENSSDUG00000015540	-	94	70.223	ENSFHEG00000002769	-	97	70.223	Fundulus_heteroclitus
ENSSDUG00000015540	-	100	85.045	ENSGMOG00000017799	-	100	85.045	Gadus_morhua
ENSSDUG00000015540	-	97	54.338	ENSGALG00000027695	PCBP4	97	55.479	Gallus_gallus
ENSSDUG00000015540	-	81	89.373	ENSGAFG00000021090	-	76	91.573	Gambusia_affinis
ENSSDUG00000015540	-	60	88.158	ENSGAFG00000018301	pcbp4	63	88.742	Gambusia_affinis
ENSSDUG00000015540	-	100	87.723	ENSGACG00000002664	-	100	88.393	Gasterosteus_aculeatus
ENSSDUG00000015540	-	97	58.219	ENSGAGG00000022116	PCBP4	95	58.219	Gopherus_agassizii
ENSSDUG00000015540	-	98	53.812	ENSGGOG00000012474	PCBP4	99	54.464	Gorilla_gorilla
ENSSDUG00000015540	-	100	95.804	ENSHBUG00000005329	-	100	95.804	Haplochromis_burtoni
ENSSDUG00000015540	-	100	69.502	ENSHBUG00000009472	pcbp4	96	69.710	Haplochromis_burtoni
ENSSDUG00000015540	-	97	54.566	ENSHGLG00000012018	PCBP4	97	55.125	Heterocephalus_glaber_female
ENSSDUG00000015540	-	97	54.318	ENSHGLG00100008748	PCBP4	97	54.751	Heterocephalus_glaber_male
ENSSDUG00000015540	-	100	84.564	ENSHCOG00000010838	-	92	98.026	Hippocampus_comes
ENSSDUG00000015540	-	100	79.733	ENSIPUG00000008212	pcbp4	98	79.733	Ictalurus_punctatus
ENSSDUG00000015540	-	97	55.478	ENSSTOG00000002573	PCBP4	97	56.148	Ictidomys_tridecemlineatus
ENSSDUG00000015540	-	97	55.478	ENSJJAG00000016235	Pcbp4	97	56.148	Jaculus_jaculus
ENSSDUG00000015540	-	100	72.009	ENSKMAG00000014252	pcbp4	96	72.222	Kryptolebias_marmoratus
ENSSDUG00000015540	-	100	91.928	ENSKMAG00000017554	-	98	91.928	Kryptolebias_marmoratus
ENSSDUG00000015540	-	100	95.183	ENSLBEG00000011345	-	100	95.183	Labrus_bergylta
ENSSDUG00000015540	-	99	62.613	ENSLACG00000015899	PCBP4	90	73.684	Latimeria_chalumnae
ENSSDUG00000015540	-	100	76.786	ENSLOCG00000013402	pcbp4	98	77.506	Lepisosteus_oculatus
ENSSDUG00000015540	-	94	56.049	ENSLAFG00000010732	PCBP4	100	56.511	Loxodonta_africana
ENSSDUG00000015540	-	98	54.505	ENSMFAG00000001431	PCBP4	99	54.933	Macaca_fascicularis
ENSSDUG00000015540	-	98	54.505	ENSMMUG00000022205	PCBP4	99	54.933	Macaca_mulatta
ENSSDUG00000015540	-	98	54.505	ENSMNEG00000028553	PCBP4	99	54.933	Macaca_nemestrina
ENSSDUG00000015540	-	98	54.505	ENSMLEG00000027083	PCBP4	99	54.933	Mandrillus_leucophaeus
ENSSDUG00000015540	-	100	95.900	ENSMAMG00000011364	-	100	95.900	Mastacembelus_armatus
ENSSDUG00000015540	-	100	71.429	ENSMAMG00000010163	pcbp4	95	71.429	Mastacembelus_armatus
ENSSDUG00000015540	-	100	69.710	ENSMZEG00005008852	pcbp4	94	74.941	Maylandia_zebra
ENSSDUG00000015540	-	100	97.430	ENSMZEG00005023631	-	100	97.430	Maylandia_zebra
ENSSDUG00000015540	-	69	53.953	ENSMGAG00000003895	-	99	53.953	Meleagris_gallopavo
ENSSDUG00000015540	-	52	64.516	ENSMGAG00000005091	-	85	64.516	Meleagris_gallopavo
ENSSDUG00000015540	-	97	54.462	ENSMAUG00000021064	Pcbp4	97	55.125	Mesocricetus_auratus
ENSSDUG00000015540	-	97	54.691	ENSMICG00000002686	PCBP4	97	55.125	Microcebus_murinus
ENSSDUG00000015540	-	97	54.920	ENSMOCG00000013557	Pcbp4	97	55.581	Microtus_ochrogaster
ENSSDUG00000015540	-	70	62.903	ENSMMOG00000017756	pcbp4	92	62.903	Mola_mola
ENSSDUG00000015540	-	100	92.517	ENSMMOG00000020533	-	100	92.517	Mola_mola
ENSSDUG00000015540	-	97	54.462	ENSMODG00000011790	PCBP4	82	54.233	Monodelphis_domestica
ENSSDUG00000015540	-	92	97.716	ENSMALG00000022117	-	100	97.574	Monopterus_albus
ENSSDUG00000015540	-	91	73.671	ENSMALG00000020318	pcbp4	87	74.638	Monopterus_albus
ENSSDUG00000015540	-	97	54.462	MGP_CAROLIEiJ_G0032623	Pcbp4	93	65.761	Mus_caroli
ENSSDUG00000015540	-	97	54.462	ENSMUSG00000023495	Pcbp4	93	65.761	Mus_musculus
ENSSDUG00000015540	-	97	54.462	MGP_PahariEiJ_G0015491	Pcbp4	93	65.761	Mus_pahari
ENSSDUG00000015540	-	97	54.462	MGP_SPRETEiJ_G0033768	-	93	65.761	Mus_spretus
ENSSDUG00000015540	-	97	54.233	ENSMPUG00000011766	PCBP4	97	54.897	Mustela_putorius_furo
ENSSDUG00000015540	-	97	54.462	ENSNGAG00000013148	Pcbp4	99	54.813	Nannospalax_galili
ENSSDUG00000015540	-	97	63.946	ENSNBRG00000007475	pcbp4	99	63.946	Neolamprologus_brichardi
ENSSDUG00000015540	-	100	97.664	ENSNBRG00000015885	-	100	97.664	Neolamprologus_brichardi
ENSSDUG00000015540	-	98	54.505	ENSNLEG00000007064	PCBP4	99	54.933	Nomascus_leucogenys
ENSSDUG00000015540	-	96	48.684	ENSMEUG00000006917	PCBP4	97	48.899	Notamacropus_eugenii
ENSSDUG00000015540	-	95	50.780	ENSOPRG00000008763	PCBP4	99	51.225	Ochotona_princeps
ENSSDUG00000015540	-	97	54.233	ENSODEG00000018230	PCBP4	97	54.897	Octodon_degus
ENSSDUG00000015540	-	97	53.670	ENSOANG00000014110	PCBP4	94	53.725	Ornithorhynchus_anatinus
ENSSDUG00000015540	-	97	54.462	ENSOCUG00000025336	PCBP4	97	54.897	Oryctolagus_cuniculus
ENSSDUG00000015540	-	100	92.325	ENSORLG00000009899	-	100	92.325	Oryzias_latipes
ENSSDUG00000015540	-	100	69.263	ENSORLG00000003061	pcbp4	96	69.474	Oryzias_latipes
ENSSDUG00000015540	-	100	92.152	ENSORLG00020001183	-	100	90.315	Oryzias_latipes_hni
ENSSDUG00000015540	-	100	68.476	ENSORLG00015019262	pcbp4	96	68.476	Oryzias_latipes_hsok
ENSSDUG00000015540	-	100	92.601	ENSORLG00015017819	-	98	92.601	Oryzias_latipes_hsok
ENSSDUG00000015540	-	100	66.951	ENSOMEG00000003516	-	100	66.900	Oryzias_melastigma
ENSSDUG00000015540	-	100	93.274	ENSOMEG00000011545	-	98	93.274	Oryzias_melastigma
ENSSDUG00000015540	-	97	54.462	ENSOGAG00000032384	PCBP4	97	54.897	Otolemur_garnettii
ENSSDUG00000015540	-	94	56.049	ENSOARG00000006603	PCBP4	98	56.511	Ovis_aries
ENSSDUG00000015540	-	98	53.587	ENSPPAG00000038764	PCBP4	99	54.241	Pan_paniscus
ENSSDUG00000015540	-	97	54.233	ENSPPRG00000006165	PCBP4	97	54.897	Panthera_pardus
ENSSDUG00000015540	-	97	54.233	ENSPTIG00000005401	PCBP4	93	54.897	Panthera_tigris_altaica
ENSSDUG00000015540	-	98	53.812	ENSPTRG00000014983	PCBP4	99	54.464	Pan_troglodytes
ENSSDUG00000015540	-	98	54.505	ENSPANG00000026222	PCBP4	99	54.933	Papio_anubis
ENSSDUG00000015540	-	100	71.365	ENSPKIG00000005487	-	98	71.365	Paramormyrops_kingsleyae
ENSSDUG00000015540	-	100	79.195	ENSPKIG00000010244	pcbp4	100	80.607	Paramormyrops_kingsleyae
ENSSDUG00000015540	-	81	55.676	ENSPSIG00000011286	PCBP4	96	54.268	Pelodiscus_sinensis
ENSSDUG00000015540	-	94	73.105	ENSPMGG00000000063	pcbp4	96	73.105	Periophthalmus_magnuspinnatus
ENSSDUG00000015540	-	100	86.073	ENSPMGG00000022732	-	100	86.530	Periophthalmus_magnuspinnatus
ENSSDUG00000015540	-	97	54.566	ENSPEMG00000009276	Pcbp4	97	55.251	Peromyscus_maniculatus_bairdii
ENSSDUG00000015540	-	97	55.378	ENSPCIG00000018151	PCBP4	93	54.920	Phascolarctos_cinereus
ENSSDUG00000015540	-	97	66.518	ENSPFOG00000014474	pcbp4	96	81.818	Poecilia_formosa
ENSSDUG00000015540	-	100	91.928	ENSPFOG00000002989	-	98	91.928	Poecilia_formosa
ENSSDUG00000015540	-	85	70.235	ENSPLAG00000023316	pcbp4	89	71.540	Poecilia_latipinna
ENSSDUG00000015540	-	96	65.083	ENSPLAG00000011438	-	98	65.083	Poecilia_latipinna
ENSSDUG00000015540	-	64	61.775	ENSPMEG00000012990	pcbp4	100	63.087	Poecilia_mexicana
ENSSDUG00000015540	-	100	90.632	ENSPREG00000017370	-	100	90.632	Poecilia_reticulata
ENSSDUG00000015540	-	74	59.058	ENSPREG00000021498	-	75	59.058	Poecilia_reticulata
ENSSDUG00000015540	-	98	54.036	ENSPPYG00000013822	PCBP4	99	54.688	Pongo_abelii
ENSSDUG00000015540	-	96	52.144	ENSPCAG00000009515	PCBP4	99	52.596	Procavia_capensis
ENSSDUG00000015540	-	97	54.462	ENSPCOG00000027535	PCBP4	97	55.125	Propithecus_coquereli
ENSSDUG00000015540	-	96	49.028	ENSPVAG00000012474	PCBP4	99	49.460	Pteropus_vampyrus
ENSSDUG00000015540	-	94	74.704	ENSPNYG00000019234	pcbp4	95	74.941	Pundamilia_nyererei
ENSSDUG00000015540	-	100	97.196	ENSPNYG00000003098	-	100	97.196	Pundamilia_nyererei
ENSSDUG00000015540	-	100	79.736	ENSPNAG00000025434	pcbp4	98	80.176	Pygocentrus_nattereri
ENSSDUG00000015540	-	97	54.462	ENSRNOG00000012406	Pcbp4	97	55.125	Rattus_norvegicus
ENSSDUG00000015540	-	98	54.505	ENSRBIG00000043793	PCBP4	99	54.933	Rhinopithecus_bieti
ENSSDUG00000015540	-	98	54.505	ENSRROG00000034589	PCBP4	99	54.933	Rhinopithecus_roxellana
ENSSDUG00000015540	-	98	54.036	ENSSBOG00000027029	PCBP4	99	54.688	Saimiri_boliviensis_boliviensis
ENSSDUG00000015540	-	69	55.230	ENSSHAG00000007362	PCBP4	91	55.230	Sarcophilus_harrisii
ENSSDUG00000015540	-	100	71.492	ENSSFOG00015012075	PCBP4	98	71.492	Scleropages_formosus
ENSSDUG00000015540	-	75	82.468	ENSSFOG00015008221	pcbp4	60	82.468	Scleropages_formosus
ENSSDUG00000015540	-	100	94.884	ENSSMAG00000009392	-	100	94.884	Scophthalmus_maximus
ENSSDUG00000015540	-	100	70.105	ENSSMAG00000005827	pcbp4	94	71.519	Scophthalmus_maximus
ENSSDUG00000015540	-	57	81.325	ENSSLDG00000024847	-	72	81.325	Seriola_lalandi_dorsalis
ENSSDUG00000015540	-	100	100.000	ENSSLDG00000007851	-	100	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000015540	-	97	53.333	ENSSPUG00000000194	PCBP4	97	53.563	Sphenodon_punctatus
ENSSDUG00000015540	-	100	93.946	ENSSPAG00000003033	-	100	93.692	Stegastes_partitus
ENSSDUG00000015540	-	86	64.508	ENSSPAG00000019058	-	92	64.508	Stegastes_partitus
ENSSDUG00000015540	-	97	54.233	ENSSSCG00000028446	PCBP4	97	54.897	Sus_scrofa
ENSSDUG00000015540	-	70	52.632	ENSTGUG00000006393	PCBP4	96	52.632	Taeniopygia_guttata
ENSSDUG00000015540	-	100	94.172	ENSTRUG00000007426	-	100	94.172	Takifugu_rubripes
ENSSDUG00000015540	-	100	83.184	ENSTNIG00000017887	-	99	83.184	Tetraodon_nigroviridis
ENSSDUG00000015540	-	85	39.216	ENSTBEG00000015770	PCBP4	100	39.951	Tupaia_belangeri
ENSSDUG00000015540	-	75	54.497	ENSTTRG00000001443	PCBP4	84	54.450	Tursiops_truncatus
ENSSDUG00000015540	-	98	50.113	ENSUAMG00000020871	PCBP4	100	55.200	Ursus_americanus
ENSSDUG00000015540	-	88	55.473	ENSUMAG00000021609	PCBP4	92	55.231	Ursus_maritimus
ENSSDUG00000015540	-	97	54.462	ENSVVUG00000026857	PCBP4	97	54.897	Vulpes_vulpes
ENSSDUG00000015540	-	59	88.000	ENSXCOG00000017325	pcbp4	63	88.000	Xiphophorus_couchianus
ENSSDUG00000015540	-	87	85.175	ENSXCOG00000000111	-	100	85.175	Xiphophorus_couchianus
ENSSDUG00000015540	-	90	67.980	ENSXMAG00000022188	-	90	69.212	Xiphophorus_maculatus
ENSSDUG00000015540	-	100	91.480	ENSXMAG00000024530	-	98	91.480	Xiphophorus_maculatus
ENSSDUG00000015540	-	79	76.602	ENSXMAG00000015709	pcbp4	75	76.602	Xiphophorus_maculatus