EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000015609 (Gene tree)
Gene ID: 111222399
Gene Symbol: npm1a
Alias: npm1|sb:cb487
Full Name: nucleophosmin-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 6358 bases
Position: chrBDQW01000091.1:1569921-1576278
Accession: 111222399
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000021441	Nucleoplasmin	PF03066.15	4.3e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000021834	-	1641	XM_022746114	ENSSDUP00000021441	298 (aa)	XP_022601835	UPI000BBE57A2

Gene Model

Click here to download ENSSDUG00000015609's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000015609's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000015609	npm1a	96	41.503	ENSSDUG00000007726	npm1b	95	42.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000015609	npm1a	100	79.470	ENSAPOG00000002813	npm1a	100	78.808	Acanthochromis_polyacanthus
ENSSDUG00000015609	npm1a	94	77.193	ENSACIG00000014201	npm1a	100	77.193	Amphilophus_citrinellus
ENSSDUG00000015609	npm1a	89	71.698	ENSAOCG00000004978	npm1a	100	70.189	Amphiprion_ocellaris
ENSSDUG00000015609	npm1a	100	80.602	ENSAPEG00000008594	npm1a	100	79.933	Amphiprion_percula
ENSSDUG00000015609	npm1a	100	82.958	ENSATEG00000008885	npm1a	100	82.637	Anabas_testudineus
ENSSDUG00000015609	npm1a	95	72.727	ENSACLG00000008376	npm1a	94	72.085	Astatotilapia_calliptera
ENSSDUG00000015609	npm1a	98	56.803	ENSAMXG00000010155	npm1a	99	58.844	Astyanax_mexicanus
ENSSDUG00000015609	npm1a	100	64.094	ENSCSEG00000011165	npm1a	100	64.430	Cynoglossus_semilaevis
ENSSDUG00000015609	npm1a	100	70.903	ENSCVAG00000008960	npm1a	100	70.903	Cyprinodon_variegatus
ENSSDUG00000015609	npm1a	98	62.116	ENSDARG00000014329	npm1a	94	69.231	Danio_rerio
ENSSDUG00000015609	npm1a	95	34.969	ENSEBUG00000012753	npm1a	91	35.385	Eptatretus_burgeri
ENSSDUG00000015609	npm1a	100	70.000	ENSELUG00000013705	npm1a	100	69.333	Esox_lucius
ENSSDUG00000015609	npm1a	100	74.342	ENSFHEG00000012496	npm1a	100	74.013	Fundulus_heteroclitus
ENSSDUG00000015609	npm1a	100	66.997	ENSGAFG00000013059	npm1a	100	66.997	Gambusia_affinis
ENSSDUG00000015609	npm1a	99	71.622	ENSGACG00000020319	npm1a	99	70.608	Gasterosteus_aculeatus
ENSSDUG00000015609	npm1a	99	73.502	ENSHBUG00000000776	npm1a	99	73.101	Haplochromis_burtoni
ENSSDUG00000015609	npm1a	100	56.393	ENSHCOG00000001059	npm1a	100	56.721	Hippocampus_comes
ENSSDUG00000015609	npm1a	98	60.201	ENSIPUG00000019452	npm1	99	60.201	Ictalurus_punctatus
ENSSDUG00000015609	npm1a	100	73.154	ENSKMAG00000010709	npm1a	100	70.134	Kryptolebias_marmoratus
ENSSDUG00000015609	npm1a	100	75.585	ENSLBEG00000008793	npm1a	100	75.920	Labrus_bergylta
ENSSDUG00000015609	npm1a	85	55.351	ENSLOCG00000009683	npm1a	100	55.351	Lepisosteus_oculatus
ENSSDUG00000015609	npm1a	100	79.530	ENSMAMG00000009344	npm1a	83	79.530	Mastacembelus_armatus
ENSSDUG00000015609	npm1a	99	73.734	ENSMZEG00005013717	npm1a	100	73.418	Maylandia_zebra
ENSSDUG00000015609	npm1a	95	78.169	ENSMMOG00000007980	npm1a	100	78.521	Mola_mola
ENSSDUG00000015609	npm1a	100	77.076	ENSMALG00000001146	npm1a	100	79.734	Monopterus_albus
ENSSDUG00000015609	npm1a	99	69.497	ENSNBRG00000013172	npm1a	100	69.182	Neolamprologus_brichardi
ENSSDUG00000015609	npm1a	99	71.333	ENSONIG00000001860	npm1a	98	73.026	Oreochromis_niloticus
ENSSDUG00000015609	npm1a	100	75.839	ENSORLG00000010179	npm1a	100	75.503	Oryzias_latipes
ENSSDUG00000015609	npm1a	100	75.503	ENSORLG00020020817	npm1a	100	74.832	Oryzias_latipes_hni
ENSSDUG00000015609	npm1a	100	75.839	ENSORLG00015003439	npm1a	100	75.503	Oryzias_latipes_hsok
ENSSDUG00000015609	npm1a	100	75.168	ENSOMEG00000007083	npm1a	100	75.168	Oryzias_melastigma
ENSSDUG00000015609	npm1a	100	53.947	ENSPKIG00000023943	npm1a	100	53.947	Paramormyrops_kingsleyae
ENSSDUG00000015609	npm1a	100	69.307	ENSPFOG00000019173	npm1a	100	68.977	Poecilia_formosa
ENSSDUG00000015609	npm1a	100	66.885	ENSPLAG00000001093	npm1a	100	66.557	Poecilia_latipinna
ENSSDUG00000015609	npm1a	100	69.307	ENSPMEG00000012523	npm1a	100	68.977	Poecilia_mexicana
ENSSDUG00000015609	npm1a	100	69.307	ENSPREG00000001647	npm1a	100	68.977	Poecilia_reticulata
ENSSDUG00000015609	npm1a	99	75.962	ENSPNYG00000019321	npm1a	100	75.321	Pundamilia_nyererei
ENSSDUG00000015609	npm1a	98	60.667	ENSPNAG00000026891	npm1a	99	61.000	Pygocentrus_nattereri
ENSSDUG00000015609	npm1a	100	61.258	ENSSFOG00015007074	npm1a	100	60.927	Scleropages_formosus
ENSSDUG00000015609	npm1a	100	79.402	ENSSMAG00000019090	npm1a	100	80.066	Scophthalmus_maximus
ENSSDUG00000015609	npm1a	100	98.658	ENSSLDG00000017849	npm1a	100	98.658	Seriola_lalandi_dorsalis
ENSSDUG00000015609	npm1a	100	61.409	ENSSPAG00000021660	npm1a	94	58.503	Stegastes_partitus
ENSSDUG00000015609	npm1a	100	76.568	ENSTRUG00000024003	npm1a	100	76.238	Takifugu_rubripes
ENSSDUG00000015609	npm1a	100	75.920	ENSTNIG00000010773	npm1a	100	75.920	Tetraodon_nigroviridis
ENSSDUG00000015609	npm1a	99	62.500	ENSXCOG00000005958	npm1a	100	65.157	Xiphophorus_couchianus
ENSSDUG00000015609	npm1a	100	69.180	ENSXMAG00000000396	npm1a	100	68.852	Xiphophorus_maculatus