EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000015624 (Gene tree)
Gene ID: 111234416
Gene Symbol: smfn
Alias: zgc:73191
Full Name: RNA exonuclease 2
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 11554 bases
Position: chrBDQW01000449.1:8315631-8327184
Accession: 111234416
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000021473	RNase_T	PF00929.24	1.2e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000021866	-	3137	XM_022762498	ENSSDUP00000021473	285 (aa)	XP_022618219	UPI000BBE3A25

Gene Model

Click here to download ENSSDUG00000015624's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000015624's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000015624	smfn	71	78.607	ENSG00000076043	REXO2	99	79.570	Homo_sapiens
ENSSDUG00000015624	smfn	71	79.104	ENSAMEG00000013263	REXO2	85	79.104	Ailuropoda_melanoleuca
ENSSDUG00000015624	smfn	65	90.323	ENSACIG00000023553	smfn	100	90.323	Amphilophus_citrinellus
ENSSDUG00000015624	smfn	99	74.733	ENSAPEG00000012435	smfn	99	74.733	Amphiprion_percula
ENSSDUG00000015624	smfn	98	78.571	ENSATEG00000015385	smfn	98	78.571	Anabas_testudineus
ENSSDUG00000015624	smfn	66	79.144	ENSAPLG00000005045	REXO2	93	79.144	Anas_platyrhynchos
ENSSDUG00000015624	smfn	64	73.224	ENSACAG00000011631	REXO2	86	73.224	Anolis_carolinensis
ENSSDUG00000015624	smfn	77	75.000	ENSANAG00000020834	REXO2	93	75.000	Aotus_nancymaae
ENSSDUG00000015624	smfn	81	80.087	ENSACLG00000024566	smfn	100	86.387	Astatotilapia_calliptera
ENSSDUG00000015624	smfn	71	79.104	ENSBTAG00000005843	REXO2	85	79.104	Bos_taurus
ENSSDUG00000015624	smfn	64	47.514	WBGene00007429	C08B6.8	93	52.055	Caenorhabditis_elegans
ENSSDUG00000015624	smfn	77	74.091	ENSCJAG00000012434	REXO2	93	74.091	Callithrix_jacchus
ENSSDUG00000015624	smfn	71	78.109	ENSCAFG00000013511	REXO2	85	78.109	Canis_familiaris
ENSSDUG00000015624	smfn	71	79.104	ENSCAFG00020002513	REXO2	93	74.545	Canis_lupus_dingo
ENSSDUG00000015624	smfn	71	79.104	ENSCHIG00000009264	REXO2	85	79.104	Capra_hircus
ENSSDUG00000015624	smfn	71	79.104	ENSTSYG00000002237	REXO2	85	79.104	Carlito_syrichta
ENSSDUG00000015624	smfn	68	68.912	ENSTSYG00000027948	-	99	68.912	Carlito_syrichta
ENSSDUG00000015624	smfn	65	80.645	ENSCAPG00000006093	REXO2	99	80.645	Cavia_aperea
ENSSDUG00000015624	smfn	71	79.602	ENSCPOG00000010548	REXO2	85	79.602	Cavia_porcellus
ENSSDUG00000015624	smfn	77	75.000	ENSCCAG00000034979	REXO2	93	75.000	Cebus_capucinus
ENSSDUG00000015624	smfn	77	74.091	ENSCATG00000015278	REXO2	93	74.091	Cercocebus_atys
ENSSDUG00000015624	smfn	71	79.602	ENSCLAG00000011195	REXO2	85	79.602	Chinchilla_lanigera
ENSSDUG00000015624	smfn	77	74.091	ENSCSAG00000002754	REXO2	93	74.091	Chlorocebus_sabaeus
ENSSDUG00000015624	smfn	71	77.612	ENSCHOG00000000642	-	85	77.612	Choloepus_hoffmanni
ENSSDUG00000015624	smfn	50	72.727	ENSCPBG00000009359	REXO2	99	72.727	Chrysemys_picta_bellii
ENSSDUG00000015624	smfn	67	56.316	ENSCING00000009858	-	92	56.316	Ciona_intestinalis
ENSSDUG00000015624	smfn	77	74.091	ENSCANG00000034756	REXO2	93	74.091	Colobus_angolensis_palliatus
ENSSDUG00000015624	smfn	71	78.109	ENSCGRG00001013673	-	98	78.109	Cricetulus_griseus_chok1gshd
ENSSDUG00000015624	smfn	71	79.104	ENSCGRG00001019814	-	85	79.104	Cricetulus_griseus_chok1gshd
ENSSDUG00000015624	smfn	71	76.617	ENSCGRG00001010922	-	98	76.617	Cricetulus_griseus_chok1gshd
ENSSDUG00000015624	smfn	71	79.104	ENSCGRG00000006235	Rexo2	85	79.104	Cricetulus_griseus_crigri
ENSSDUG00000015624	smfn	97	70.758	ENSCSEG00000007214	smfn	97	70.758	Cynoglossus_semilaevis
ENSSDUG00000015624	smfn	63	85.000	ENSCVAG00000012008	smfn	97	85.000	Cyprinodon_variegatus
ENSSDUG00000015624	smfn	69	80.102	ENSDARG00000009806	smfn	75	80.102	Danio_rerio
ENSSDUG00000015624	smfn	61	82.286	ENSDNOG00000046533	REXO2	84	82.286	Dasypus_novemcinctus
ENSSDUG00000015624	smfn	68	63.212	ENSDORG00000025142	-	86	62.121	Dipodomys_ordii
ENSSDUG00000015624	smfn	71	79.602	ENSDORG00000011255	Rexo2	85	79.602	Dipodomys_ordii
ENSSDUG00000015624	smfn	69	49.268	FBgn0039115	CG10214	97	49.268	Drosophila_melanogaster
ENSSDUG00000015624	smfn	63	75.419	ENSEBUG00000013964	REXO2	61	75.419	Eptatretus_burgeri
ENSSDUG00000015624	smfn	71	79.104	ENSEASG00005006674	REXO2	85	79.104	Equus_asinus_asinus
ENSSDUG00000015624	smfn	71	79.104	ENSECAG00000005988	REXO2	85	79.104	Equus_caballus
ENSSDUG00000015624	smfn	70	81.500	ENSELUG00000020072	smfn	69	81.500	Esox_lucius
ENSSDUG00000015624	smfn	77	74.545	ENSFCAG00000018632	REXO2	93	74.545	Felis_catus
ENSSDUG00000015624	smfn	66	79.144	ENSFALG00000010044	REXO2	93	79.144	Ficedula_albicollis
ENSSDUG00000015624	smfn	71	79.602	ENSFDAG00000011764	REXO2	85	79.602	Fukomys_damarensis
ENSSDUG00000015624	smfn	66	81.915	ENSGMOG00000006370	smfn	97	81.915	Gadus_morhua
ENSSDUG00000015624	smfn	68	79.487	ENSGALG00000035980	REXO2	85	78.788	Gallus_gallus
ENSSDUG00000015624	smfn	99	66.078	ENSGAFG00000015349	smfn	99	66.078	Gambusia_affinis
ENSSDUG00000015624	smfn	68	86.154	ENSGACG00000020096	smfn	96	86.154	Gasterosteus_aculeatus
ENSSDUG00000015624	smfn	71	77.228	ENSGAGG00000021126	REXO2	88	77.228	Gopherus_agassizii
ENSSDUG00000015624	smfn	77	74.091	ENSGGOG00000023267	REXO2	93	74.091	Gorilla_gorilla
ENSSDUG00000015624	smfn	81	59.307	ENSHBUG00000020097	REXO2	84	59.307	Haplochromis_burtoni
ENSSDUG00000015624	smfn	79	72.889	ENSHGLG00000013556	REXO2	93	72.889	Heterocephalus_glaber_female
ENSSDUG00000015624	smfn	79	73.333	ENSHGLG00100005257	REXO2	93	73.333	Heterocephalus_glaber_male
ENSSDUG00000015624	smfn	63	82.778	ENSHCOG00000007122	smfn	98	82.778	Hippocampus_comes
ENSSDUG00000015624	smfn	70	83.500	ENSIPUG00000020440	rexo2	73	84.848	Ictalurus_punctatus
ENSSDUG00000015624	smfn	77	75.000	ENSSTOG00000012465	REXO2	93	75.000	Ictidomys_tridecemlineatus
ENSSDUG00000015624	smfn	77	75.000	ENSJJAG00000013710	-	93	75.000	Jaculus_jaculus
ENSSDUG00000015624	smfn	71	56.436	ENSJJAG00000022605	-	81	56.436	Jaculus_jaculus
ENSSDUG00000015624	smfn	80	77.922	ENSKMAG00000016795	smfn	82	79.654	Kryptolebias_marmoratus
ENSSDUG00000015624	smfn	66	84.656	ENSLBEG00000006021	smfn	100	84.656	Labrus_bergylta
ENSSDUG00000015624	smfn	78	64.732	ENSLACG00000018623	REXO2	90	64.732	Latimeria_chalumnae
ENSSDUG00000015624	smfn	70	84.000	ENSLOCG00000002389	smfn	95	84.000	Lepisosteus_oculatus
ENSSDUG00000015624	smfn	69	80.303	ENSLAFG00000012451	REXO2	94	73.543	Loxodonta_africana
ENSSDUG00000015624	smfn	77	74.091	ENSMFAG00000041155	REXO2	93	74.091	Macaca_fascicularis
ENSSDUG00000015624	smfn	77	74.091	ENSMMUG00000012269	REXO2	93	74.091	Macaca_mulatta
ENSSDUG00000015624	smfn	77	74.091	ENSMNEG00000033379	REXO2	93	74.091	Macaca_nemestrina
ENSSDUG00000015624	smfn	77	74.091	ENSMLEG00000036571	REXO2	93	74.091	Mandrillus_leucophaeus
ENSSDUG00000015624	smfn	99	79.078	ENSMAMG00000021209	smfn	99	79.078	Mastacembelus_armatus
ENSSDUG00000015624	smfn	81	80.087	ENSMZEG00005023224	-	83	80.087	Maylandia_zebra
ENSSDUG00000015624	smfn	81	80.087	ENSMZEG00005020730	REXO2	83	80.087	Maylandia_zebra
ENSSDUG00000015624	smfn	56	77.640	ENSMGAG00000003026	REXO2	99	77.640	Meleagris_gallopavo
ENSSDUG00000015624	smfn	71	79.104	ENSMAUG00000014576	Rexo2	85	79.104	Mesocricetus_auratus
ENSSDUG00000015624	smfn	71	79.602	ENSMICG00000010094	REXO2	85	79.602	Microcebus_murinus
ENSSDUG00000015624	smfn	71	79.104	ENSMOCG00000009016	Rexo2	85	79.104	Microtus_ochrogaster
ENSSDUG00000015624	smfn	96	70.545	ENSMMOG00000006430	smfn	96	70.545	Mola_mola
ENSSDUG00000015624	smfn	71	81.095	ENSMODG00000013913	REXO2	85	81.095	Monodelphis_domestica
ENSSDUG00000015624	smfn	97	76.449	ENSMALG00000018130	smfn	79	76.449	Monopterus_albus
ENSSDUG00000015624	smfn	70	80.000	MGP_CAROLIEiJ_G0032166	Rexo2	84	80.000	Mus_caroli
ENSSDUG00000015624	smfn	70	79.500	ENSMUSG00000032026	Rexo2	84	79.500	Mus_musculus
ENSSDUG00000015624	smfn	70	79.500	MGP_PahariEiJ_G0015034	Rexo2	84	79.500	Mus_pahari
ENSSDUG00000015624	smfn	70	79.500	MGP_SPRETEiJ_G0033305	Rexo2	84	79.500	Mus_spretus
ENSSDUG00000015624	smfn	71	79.104	ENSMPUG00000003947	REXO2	85	79.104	Mustela_putorius_furo
ENSSDUG00000015624	smfn	77	74.091	ENSMLUG00000009030	REXO2	93	74.091	Myotis_lucifugus
ENSSDUG00000015624	smfn	71	79.104	ENSNGAG00000008819	Rexo2	98	79.104	Nannospalax_galili
ENSSDUG00000015624	smfn	53	53.333	ENSNBRG00000015319	-	92	53.333	Neolamprologus_brichardi
ENSSDUG00000015624	smfn	66	87.766	ENSNBRG00000006529	smfn	99	87.766	Neolamprologus_brichardi
ENSSDUG00000015624	smfn	77	74.091	ENSNLEG00000029745	REXO2	93	74.091	Nomascus_leucogenys
ENSSDUG00000015624	smfn	71	81.095	ENSMEUG00000011558	REXO2	92	81.095	Notamacropus_eugenii
ENSSDUG00000015624	smfn	71	55.224	ENSOPRG00000011076	REXO2	85	55.224	Ochotona_princeps
ENSSDUG00000015624	smfn	68	61.026	ENSODEG00000016046	-	98	61.026	Octodon_degus
ENSSDUG00000015624	smfn	65	80.645	ENSODEG00000009750	-	99	80.645	Octodon_degus
ENSSDUG00000015624	smfn	81	81.818	ENSONIG00000001954	smfn	94	81.818	Oreochromis_niloticus
ENSSDUG00000015624	smfn	71	78.607	ENSOANG00000001754	REXO2	94	71.806	Ornithorhynchus_anatinus
ENSSDUG00000015624	smfn	71	79.602	ENSOCUG00000004274	REXO2	80	79.602	Oryctolagus_cuniculus
ENSSDUG00000015624	smfn	90	72.656	ENSORLG00000005119	smfn	81	72.656	Oryzias_latipes
ENSSDUG00000015624	smfn	90	73.047	ENSORLG00020010121	smfn	81	73.047	Oryzias_latipes_hni
ENSSDUG00000015624	smfn	90	72.656	ENSORLG00015015699	smfn	81	72.656	Oryzias_latipes_hsok
ENSSDUG00000015624	smfn	50	78.873	ENSOMEG00000008940	-	99	78.873	Oryzias_melastigma
ENSSDUG00000015624	smfn	88	71.713	ENSOMEG00000016878	REXO2	89	71.713	Oryzias_melastigma
ENSSDUG00000015624	smfn	71	79.602	ENSOGAG00000016860	REXO2	85	79.602	Otolemur_garnettii
ENSSDUG00000015624	smfn	69	80.303	ENSOARG00000001040	REXO2	94	79.104	Ovis_aries
ENSSDUG00000015624	smfn	71	78.607	ENSPPAG00000039849	REXO2	85	78.607	Pan_paniscus
ENSSDUG00000015624	smfn	77	74.545	ENSPPRG00000007255	REXO2	93	74.545	Panthera_pardus
ENSSDUG00000015624	smfn	65	80.108	ENSPTIG00000015578	REXO2	99	80.108	Panthera_tigris_altaica
ENSSDUG00000015624	smfn	71	78.607	ENSPTRG00000004306	REXO2	85	78.607	Pan_troglodytes
ENSSDUG00000015624	smfn	77	74.091	ENSPANG00000010675	REXO2	93	74.091	Papio_anubis
ENSSDUG00000015624	smfn	70	81.068	ENSPKIG00000000911	smfn	77	86.486	Paramormyrops_kingsleyae
ENSSDUG00000015624	smfn	69	80.303	ENSPSIG00000005151	REXO2	74	78.818	Pelodiscus_sinensis
ENSSDUG00000015624	smfn	65	84.946	ENSPMGG00000007442	smfn	99	84.946	Periophthalmus_magnuspinnatus
ENSSDUG00000015624	smfn	71	64.179	ENSPEMG00000001421	Rexo2	84	64.179	Peromyscus_maniculatus_bairdii
ENSSDUG00000015624	smfn	71	81.095	ENSPCIG00000011227	REXO2	54	81.095	Phascolarctos_cinereus
ENSSDUG00000015624	smfn	99	67.958	ENSPFOG00000017861	smfn	99	86.070	Poecilia_formosa
ENSSDUG00000015624	smfn	84	66.805	ENSPLAG00000007327	REXO2	92	66.805	Poecilia_latipinna
ENSSDUG00000015624	smfn	99	67.958	ENSPMEG00000017343	smfn	100	67.958	Poecilia_mexicana
ENSSDUG00000015624	smfn	99	66.197	ENSPREG00000016438	smfn	100	66.197	Poecilia_reticulata
ENSSDUG00000015624	smfn	77	74.091	ENSPPYG00000003895	REXO2	93	74.091	Pongo_abelii
ENSSDUG00000015624	smfn	69	79.798	ENSPCAG00000005237	REXO2	85	78.607	Procavia_capensis
ENSSDUG00000015624	smfn	56	81.988	ENSPCOG00000027639	REXO2	83	81.988	Propithecus_coquereli
ENSSDUG00000015624	smfn	77	63.514	ENSPVAG00000005295	REXO2	93	63.514	Pteropus_vampyrus
ENSSDUG00000015624	smfn	81	79.654	ENSPNYG00000018401	smfn	83	79.654	Pundamilia_nyererei
ENSSDUG00000015624	smfn	88	68.702	ENSPNAG00000005290	smfn	96	69.231	Pygocentrus_nattereri
ENSSDUG00000015624	smfn	70	79.500	ENSRNOG00000018939	Rexo2	84	79.500	Rattus_norvegicus
ENSSDUG00000015624	smfn	77	74.091	ENSRBIG00000037809	REXO2	93	74.091	Rhinopithecus_bieti
ENSSDUG00000015624	smfn	77	74.091	ENSRROG00000038928	REXO2	93	74.091	Rhinopithecus_roxellana
ENSSDUG00000015624	smfn	63	43.617	YLR059C	REX2	76	41.346	Saccharomyces_cerevisiae
ENSSDUG00000015624	smfn	77	75.000	ENSSBOG00000028651	REXO2	93	75.000	Saimiri_boliviensis_boliviensis
ENSSDUG00000015624	smfn	71	81.095	ENSSHAG00000008008	REXO2	86	81.095	Sarcophilus_harrisii
ENSSDUG00000015624	smfn	65	83.784	ENSSFOG00015022414	smfn	98	83.784	Scleropages_formosus
ENSSDUG00000015624	smfn	99	75.801	ENSSMAG00000003168	smfn	99	75.801	Scophthalmus_maximus
ENSSDUG00000015624	smfn	100	95.789	ENSSLDG00000014005	smfn	100	95.789	Seriola_lalandi_dorsalis
ENSSDUG00000015624	smfn	56	73.750	ENSSPUG00000006005	REXO2	86	73.750	Sphenodon_punctatus
ENSSDUG00000015624	smfn	65	93.514	ENSSPAG00000001530	smfn	99	93.514	Stegastes_partitus
ENSSDUG00000015624	smfn	71	79.104	ENSSSCG00000015056	REXO2	85	79.104	Sus_scrofa
ENSSDUG00000015624	smfn	69	78.283	ENSTGUG00000000121	REXO2	88	76.214	Taeniopygia_guttata
ENSSDUG00000015624	smfn	91	68.519	ENSTRUG00000021529	smfn	99	69.259	Takifugu_rubripes
ENSSDUG00000015624	smfn	80	75.877	ENSTNIG00000008588	smfn	100	76.316	Tetraodon_nigroviridis
ENSSDUG00000015624	smfn	71	79.602	ENSTBEG00000017040	REXO2	85	79.602	Tupaia_belangeri
ENSSDUG00000015624	smfn	69	79.798	ENSTTRG00000014928	REXO2	84	79.798	Tursiops_truncatus
ENSSDUG00000015624	smfn	77	68.778	ENSUAMG00000019096	REXO2	92	75.556	Ursus_americanus
ENSSDUG00000015624	smfn	77	74.545	ENSUMAG00000003770	REXO2	93	74.545	Ursus_maritimus
ENSSDUG00000015624	smfn	65	62.366	ENSVPAG00000006301	REXO2	99	62.366	Vicugna_pacos
ENSSDUG00000015624	smfn	71	79.104	ENSVVUG00000025223	REXO2	85	79.104	Vulpes_vulpes
ENSSDUG00000015624	smfn	75	76.056	ENSXETG00000012648	rexo2	87	75.701	Xenopus_tropicalis
ENSSDUG00000015624	smfn	67	82.199	ENSXCOG00000018838	smfn	95	83.871	Xiphophorus_couchianus
ENSSDUG00000015624	smfn	99	64.085	ENSXMAG00000021125	smfn	88	64.085	Xiphophorus_maculatus