EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000015632 (Gene tree)
Gene ID: 111218667
Gene Symbol: rif1
Alias: fc38c03|si:dkey-89p3.2|wu:fc38c03
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 19302 bases
Position: chrBDQW01000052.1:22019024-22038325
Accession: 111218667
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000021859	Rif1_N	PF12231.8	4.7e-81	1	1
ENSSDUP00000021734	Rif1_N	PF12231.8	4.5e-78	1	1
ENSSDUP00000021788	Rif1_N	PF12231.8	7.7e-74	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000022134	-	6780	-	ENSSDUP00000021734	2259 (aa)	-	-
ENSSDUT00000022265	-	6858	XM_022741076	ENSSDUP00000021859	2285 (aa)	XP_022596797	-
ENSSDUT00000022187	-	6660	-	ENSSDUP00000021788	2219 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000015632's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000015632's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000015632	rif1	72	49.394	ENSG00000080345	RIF1	92	56.274	Homo_sapiens
ENSSDUG00000015632	rif1	99	76.413	ENSAPOG00000011073	rif1	91	75.222	Acanthochromis_polyacanthus
ENSSDUG00000015632	rif1	82	50.355	ENSAMEG00000008461	RIF1	63	51.055	Ailuropoda_melanoleuca
ENSSDUG00000015632	rif1	99	69.207	ENSACIG00000017765	rif1	99	69.580	Amphilophus_citrinellus
ENSSDUG00000015632	rif1	99	76.343	ENSAOCG00000017231	rif1	91	75.086	Amphiprion_ocellaris
ENSSDUG00000015632	rif1	96	82.864	ENSAPEG00000013228	rif1	93	82.570	Amphiprion_percula
ENSSDUG00000015632	rif1	63	79.384	ENSATEG00000022887	rif1	99	78.659	Anabas_testudineus
ENSSDUG00000015632	rif1	54	50.627	ENSAPLG00000007092	RIF1	67	52.353	Anas_platyrhynchos
ENSSDUG00000015632	rif1	54	48.492	ENSACAG00000003714	RIF1	66	48.620	Anolis_carolinensis
ENSSDUG00000015632	rif1	78	48.693	ENSANAG00000024840	RIF1	74	49.394	Aotus_nancymaae
ENSSDUG00000015632	rif1	88	63.265	ENSAMXG00000010910	rif1	77	62.148	Astyanax_mexicanus
ENSSDUG00000015632	rif1	65	51.534	ENSBTAG00000021020	RIF1	61	52.311	Bos_taurus
ENSSDUG00000015632	rif1	69	49.697	ENSCJAG00000003138	RIF1	63	50.909	Callithrix_jacchus
ENSSDUG00000015632	rif1	89	49.882	ENSCAFG00000005670	RIF1	72	50.441	Canis_familiaris
ENSSDUG00000015632	rif1	70	49.844	ENSCAFG00020016401	RIF1	64	50.485	Canis_lupus_dingo
ENSSDUG00000015632	rif1	69	49.500	ENSCHIG00000020327	RIF1	62	51.174	Capra_hircus
ENSSDUG00000015632	rif1	71	47.896	ENSTSYG00000008861	RIF1	62	49.269	Carlito_syrichta
ENSSDUG00000015632	rif1	58	42.522	ENSCAPG00000008957	RIF1	68	43.072	Cavia_aperea
ENSSDUG00000015632	rif1	67	47.805	ENSCPOG00000037898	RIF1	63	48.279	Cavia_porcellus
ENSSDUG00000015632	rif1	71	48.688	ENSCCAG00000024760	RIF1	63	48.688	Cebus_capucinus
ENSSDUG00000015632	rif1	77	49.355	ENSCATG00000033353	RIF1	63	50.803	Cercocebus_atys
ENSSDUG00000015632	rif1	71	48.031	ENSCLAG00000001517	RIF1	63	51.049	Chinchilla_lanigera
ENSSDUG00000015632	rif1	72	49.697	ENSCSAG00000016089	RIF1	63	50.883	Chlorocebus_sabaeus
ENSSDUG00000015632	rif1	68	50.000	ENSCHOG00000007187	RIF1	59	50.000	Choloepus_hoffmanni
ENSSDUG00000015632	rif1	71	52.649	ENSCPBG00000025885	RIF1	69	53.184	Chrysemys_picta_bellii
ENSSDUG00000015632	rif1	67	58.590	ENSCANG00000028962	RIF1	61	58.590	Colobus_angolensis_palliatus
ENSSDUG00000015632	rif1	56	46.309	ENSCGRG00001024589	Rif1	64	48.950	Cricetulus_griseus_chok1gshd
ENSSDUG00000015632	rif1	55	47.644	ENSCGRG00000010713	Rif1	64	50.289	Cricetulus_griseus_crigri
ENSSDUG00000015632	rif1	63	72.966	ENSCSEG00000003945	rif1	62	72.740	Cynoglossus_semilaevis
ENSSDUG00000015632	rif1	62	70.294	ENSCVAG00000022479	rif1	94	70.226	Cyprinodon_variegatus
ENSSDUG00000015632	rif1	73	52.381	ENSDARG00000062650	rif1	71	51.563	Danio_rerio
ENSSDUG00000015632	rif1	72	49.846	ENSDNOG00000011194	RIF1	69	49.846	Dasypus_novemcinctus
ENSSDUG00000015632	rif1	62	59.735	ENSETEG00000012421	RIF1	59	59.735	Echinops_telfairi
ENSSDUG00000015632	rif1	59	67.434	ENSEASG00005023434	RIF1	68	67.434	Equus_asinus_asinus
ENSSDUG00000015632	rif1	63	58.761	ENSECAG00000012679	RIF1	61	58.824	Equus_caballus
ENSSDUG00000015632	rif1	84	61.663	ENSELUG00000006826	rif1	70	64.646	Esox_lucius
ENSSDUG00000015632	rif1	68	49.763	ENSFCAG00000029742	RIF1	62	50.405	Felis_catus
ENSSDUG00000015632	rif1	73	48.889	ENSFALG00000013874	RIF1	50	54.095	Ficedula_albicollis
ENSSDUG00000015632	rif1	68	50.688	ENSFDAG00000006538	RIF1	63	50.966	Fukomys_damarensis
ENSSDUG00000015632	rif1	99	63.531	ENSFHEG00000013721	rif1	94	73.176	Fundulus_heteroclitus
ENSSDUG00000015632	rif1	69	70.229	ENSGMOG00000003517	rif1	97	70.229	Gadus_morhua
ENSSDUG00000015632	rif1	64	55.162	ENSGALG00000012484	RIF1	59	55.162	Gallus_gallus
ENSSDUG00000015632	rif1	99	67.538	ENSGAFG00000017196	rif1	95	67.568	Gambusia_affinis
ENSSDUG00000015632	rif1	73	80.851	ENSGACG00000008579	rif1	99	59.392	Gasterosteus_aculeatus
ENSSDUG00000015632	rif1	67	52.736	ENSGAGG00000012595	RIF1	67	52.479	Gopherus_agassizii
ENSSDUG00000015632	rif1	60	58.934	ENSGGOG00000040178	RIF1	56	58.952	Gorilla_gorilla
ENSSDUG00000015632	rif1	73	88.889	ENSHBUG00000007125	rif1	75	89.189	Haplochromis_burtoni
ENSSDUG00000015632	rif1	64	51.759	ENSHGLG00100009807	RIF1	61	51.759	Heterocephalus_glaber_male
ENSSDUG00000015632	rif1	99	66.958	ENSHCOG00000015943	rif1	86	67.093	Hippocampus_comes
ENSSDUG00000015632	rif1	88	63.733	ENSIPUG00000021703	rif1	77	62.500	Ictalurus_punctatus
ENSSDUG00000015632	rif1	68	50.472	ENSSTOG00000020712	RIF1	62	51.574	Ictidomys_tridecemlineatus
ENSSDUG00000015632	rif1	72	46.244	ENSJJAG00000023000	Rif1	64	48.826	Jaculus_jaculus
ENSSDUG00000015632	rif1	62	71.886	ENSKMAG00000002852	rif1	60	71.886	Kryptolebias_marmoratus
ENSSDUG00000015632	rif1	99	76.982	ENSLBEG00000023196	rif1	95	72.786	Labrus_bergylta
ENSSDUG00000015632	rif1	54	55.827	ENSLACG00000005425	RIF1	52	56.220	Latimeria_chalumnae
ENSSDUG00000015632	rif1	88	53.571	ENSLOCG00000002657	rif1	81	57.341	Lepisosteus_oculatus
ENSSDUG00000015632	rif1	71	50.668	ENSLAFG00000009796	RIF1	63	51.491	Loxodonta_africana
ENSSDUG00000015632	rif1	77	49.580	ENSMFAG00000032233	RIF1	63	51.048	Macaca_fascicularis
ENSSDUG00000015632	rif1	77	49.580	ENSMMUG00000008611	RIF1	63	51.048	Macaca_mulatta
ENSSDUG00000015632	rif1	80	49.356	ENSMNEG00000031616	RIF1	63	50.722	Macaca_nemestrina
ENSSDUG00000015632	rif1	70	49.697	ENSMLEG00000042945	RIF1	63	50.803	Mandrillus_leucophaeus
ENSSDUG00000015632	rif1	76	76.268	ENSMAMG00000001745	rif1	86	73.131	Mastacembelus_armatus
ENSSDUG00000015632	rif1	98	78.585	ENSMZEG00005020920	rif1	99	69.346	Maylandia_zebra
ENSSDUG00000015632	rif1	66	63.361	ENSMAUG00000013158	Rif1	62	63.812	Mesocricetus_auratus
ENSSDUG00000015632	rif1	71	48.788	ENSMICG00000046127	RIF1	62	51.294	Microcebus_murinus
ENSSDUG00000015632	rif1	73	46.199	ENSMOCG00000009381	Rif1	74	46.006	Microtus_ochrogaster
ENSSDUG00000015632	rif1	99	60.979	ENSMMOG00000006519	rif1	100	60.914	Mola_mola
ENSSDUG00000015632	rif1	69	50.633	ENSMODG00000003703	RIF1	64	50.949	Monodelphis_domestica
ENSSDUG00000015632	rif1	78	74.474	ENSMALG00000016759	rif1	85	74.474	Monopterus_albus
ENSSDUG00000015632	rif1	68	49.051	MGP_CAROLIEiJ_G0023555	Rif1	64	50.040	Mus_caroli
ENSSDUG00000015632	rif1	68	48.870	ENSMUSG00000036202	Rif1	63	50.280	Mus_musculus
ENSSDUG00000015632	rif1	71	46.118	MGP_PahariEiJ_G0025006	Rif1	66	47.411	Mus_pahari
ENSSDUG00000015632	rif1	68	49.645	MGP_SPRETEiJ_G0024476	Rif1	63	51.091	Mus_spretus
ENSSDUG00000015632	rif1	82	46.739	ENSMPUG00000000371	RIF1	83	45.412	Mustela_putorius_furo
ENSSDUG00000015632	rif1	61	45.954	ENSMLUG00000003376	RIF1	60	48.335	Myotis_lucifugus
ENSSDUG00000015632	rif1	70	47.914	ENSNGAG00000009268	Rif1	76	47.321	Nannospalax_galili
ENSSDUG00000015632	rif1	99	69.763	ENSNBRG00000014257	rif1	99	70.194	Neolamprologus_brichardi
ENSSDUG00000015632	rif1	71	47.842	ENSNLEG00000010955	RIF1	73	45.152	Nomascus_leucogenys
ENSSDUG00000015632	rif1	52	61.207	ENSMEUG00000007601	-	50	61.207	Notamacropus_eugenii
ENSSDUG00000015632	rif1	70	47.720	ENSODEG00000003950	RIF1	63	49.072	Octodon_degus
ENSSDUG00000015632	rif1	66	87.500	ENSONIG00000013657	rif1	68	79.070	Oreochromis_niloticus
ENSSDUG00000015632	rif1	58	55.514	ENSOANG00000006078	-	55	55.514	Ornithorhynchus_anatinus
ENSSDUG00000015632	rif1	73	48.344	ENSOCUG00000017435	RIF1	65	50.928	Oryctolagus_cuniculus
ENSSDUG00000015632	rif1	99	57.759	ENSORLG00020001302	rif1	99	57.539	Oryzias_latipes_hni
ENSSDUG00000015632	rif1	99	54.695	ENSORLG00015000009	rif1	99	54.587	Oryzias_latipes_hsok
ENSSDUG00000015632	rif1	62	67.483	ENSOMEG00000021513	rif1	60	68.275	Oryzias_melastigma
ENSSDUG00000015632	rif1	68	50.435	ENSOGAG00000006141	RIF1	62	50.728	Otolemur_garnettii
ENSSDUG00000015632	rif1	69	49.732	ENSOARG00000008930	RIF1	63	51.410	Ovis_aries
ENSSDUG00000015632	rif1	72	48.788	ENSPPAG00000023754	RIF1	62	50.603	Pan_paniscus
ENSSDUG00000015632	rif1	70	49.922	ENSPPRG00000003618	RIF1	64	50.725	Panthera_pardus
ENSSDUG00000015632	rif1	70	49.922	ENSPTIG00000020652	RIF1	64	50.725	Panthera_tigris_altaica
ENSSDUG00000015632	rif1	72	49.091	ENSPTRG00000012534	RIF1	62	50.684	Pan_troglodytes
ENSSDUG00000015632	rif1	77	49.431	ENSPANG00000008525	RIF1	63	50.883	Papio_anubis
ENSSDUG00000015632	rif1	99	50.252	ENSPKIG00000004267	rif1	62	58.580	Paramormyrops_kingsleyae
ENSSDUG00000015632	rif1	79	65.842	ENSPMGG00000016141	rif1	92	65.479	Periophthalmus_magnuspinnatus
ENSSDUG00000015632	rif1	71	49.113	ENSPEMG00000000446	Rif1	66	51.242	Peromyscus_maniculatus_bairdii
ENSSDUG00000015632	rif1	72	48.817	ENSPCIG00000009185	RIF1	65	50.968	Phascolarctos_cinereus
ENSSDUG00000015632	rif1	92	60.782	ENSPFOG00000000554	-	93	72.013	Poecilia_formosa
ENSSDUG00000015632	rif1	62	73.886	ENSPFOG00000017804	rif1	94	73.109	Poecilia_formosa
ENSSDUG00000015632	rif1	99	68.961	ENSPLAG00000017945	rif1	94	71.348	Poecilia_latipinna
ENSSDUG00000015632	rif1	51	71.681	ENSPMEG00000006897	-	93	71.801	Poecilia_mexicana
ENSSDUG00000015632	rif1	99	69.979	ENSPREG00000018052	rif1	94	69.979	Poecilia_reticulata
ENSSDUG00000015632	rif1	71	49.394	ENSPPYG00000012846	RIF1	62	50.768	Pongo_abelii
ENSSDUG00000015632	rif1	70	49.697	ENSPCOG00000027888	RIF1	62	51.102	Propithecus_coquereli
ENSSDUG00000015632	rif1	59	59.592	ENSPVAG00000014276	RIF1	56	59.592	Pteropus_vampyrus
ENSSDUG00000015632	rif1	98	79.330	ENSPNYG00000012940	rif1	99	79.330	Pundamilia_nyererei
ENSSDUG00000015632	rif1	71	55.168	ENSPNAG00000016685	rif1	75	65.041	Pygocentrus_nattereri
ENSSDUG00000015632	rif1	67	48.878	ENSRNOG00000054901	Rif1	63	49.194	Rattus_norvegicus
ENSSDUG00000015632	rif1	78	47.890	ENSRBIG00000003704	RIF1	62	50.162	Rhinopithecus_bieti
ENSSDUG00000015632	rif1	78	48.268	ENSRROG00000028206	RIF1	62	50.850	Rhinopithecus_roxellana
ENSSDUG00000015632	rif1	67	52.326	ENSSBOG00000029530	RIF1	61	52.326	Saimiri_boliviensis_boliviensis
ENSSDUG00000015632	rif1	68	50.281	ENSSHAG00000018552	RIF1	64	50.572	Sarcophilus_harrisii
ENSSDUG00000015632	rif1	86	65.350	ENSSFOG00015021539	rif1	83	65.350	Scleropages_formosus
ENSSDUG00000015632	rif1	85	76.471	ENSSMAG00000011704	rif1	70	80.914	Scophthalmus_maximus
ENSSDUG00000015632	rif1	99	89.177	ENSSLDG00000019531	rif1	100	87.556	Seriola_lalandi_dorsalis
ENSSDUG00000015632	rif1	65	52.682	ENSSPUG00000003062	RIF1	51	52.885	Sphenodon_punctatus
ENSSDUG00000015632	rif1	69	78.641	ENSSPAG00000018359	rif1	89	78.906	Stegastes_partitus
ENSSDUG00000015632	rif1	68	50.629	ENSSSCG00000016395	RIF1	62	51.584	Sus_scrofa
ENSSDUG00000015632	rif1	99	60.292	ENSTRUG00000015808	rif1	92	65.135	Takifugu_rubripes
ENSSDUG00000015632	rif1	62	69.580	ENSTNIG00000011538	rif1	63	68.878	Tetraodon_nigroviridis
ENSSDUG00000015632	rif1	66	54.175	ENSTBEG00000016082	RIF1	58	54.175	Tupaia_belangeri
ENSSDUG00000015632	rif1	69	49.961	ENSTTRG00000011190	RIF1	63	51.221	Tursiops_truncatus
ENSSDUG00000015632	rif1	71	48.058	ENSUAMG00000026385	RIF1	70	48.751	Ursus_americanus
ENSSDUG00000015632	rif1	82	50.000	ENSUMAG00000000337	RIF1	73	50.605	Ursus_maritimus
ENSSDUG00000015632	rif1	74	47.029	ENSVPAG00000002162	RIF1	64	49.597	Vicugna_pacos
ENSSDUG00000015632	rif1	76	50.351	ENSVVUG00000011293	RIF1	64	51.001	Vulpes_vulpes
ENSSDUG00000015632	rif1	99	38.325	ENSXETG00000004530	rif1	51	49.671	Xenopus_tropicalis
ENSSDUG00000015632	rif1	97	70.213	ENSXMAG00000000506	rif1	94	70.213	Xiphophorus_maculatus