EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000015671 (Gene tree)
Gene ID: 111216650
Gene Symbol: ptcd1
Alias: wu:fi36d06
Full Name: pentatricopeptide repeat-containing protein 1%2C mitochondrial-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 17890 bases
Position: chrBDQW01000035.1:1904906-1922795
Accession: 111216650
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000021631	PPR	PF01535.20	5e-17	1	2
ENSSDUP00000021631	PPR	PF01535.20	5e-17	2	2
ENSSDUP00000021609	PPR	PF01535.20	2.2e-15	1	2
ENSSDUP00000021609	PPR	PF01535.20	2.2e-15	2	2
ENSSDUP00000021667	PPR	PF01535.20	9.5e-15	1	2
ENSSDUP00000021667	PPR	PF01535.20	9.5e-15	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000022025	-	2058	XM_022738241	ENSSDUP00000021631	685 (aa)	XP_022593962	-
ENSSDUT00000022003	-	2064	-	ENSSDUP00000021609	687 (aa)	-	-
ENSSDUT00000022083	-	4865	XM_022738066	ENSSDUP00000021689	649 (aa)	XP_022593787	UPI000BBE5602
ENSSDUT00000022114	-	4857	-	ENSSDUP00000021718	629 (aa)	-	-
ENSSDUT00000022159	-	4784	-	ENSSDUP00000021758	622 (aa)	-	-
ENSSDUT00000022060	-	2025	-	ENSSDUP00000021667	674 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000015671's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000015671's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000015671	ptcd1	86	47.164	ENSG00000248919	ATP5MF-PTCD1	82	46.975	Homo_sapiens
ENSSDUG00000015671	ptcd1	86	47.164	ENSG00000106246	PTCD1	88	46.975	Homo_sapiens
ENSSDUG00000015671	ptcd1	93	67.963	ENSAPOG00000010679	ptcd1	96	67.963	Acanthochromis_polyacanthus
ENSSDUG00000015671	ptcd1	84	50.839	ENSAMEG00000006224	-	78	50.839	Ailuropoda_melanoleuca
ENSSDUG00000015671	ptcd1	96	75.610	ENSACIG00000017861	ptcd1	97	75.610	Amphilophus_citrinellus
ENSSDUG00000015671	ptcd1	93	68.896	ENSAOCG00000022617	ptcd1	94	68.896	Amphiprion_ocellaris
ENSSDUG00000015671	ptcd1	98	69.379	ENSAOCG00000020741	-	94	69.379	Amphiprion_ocellaris
ENSSDUG00000015671	ptcd1	98	69.527	ENSAPEG00000022632	ptcd1	94	69.527	Amphiprion_percula
ENSSDUG00000015671	ptcd1	98	76.383	ENSATEG00000007016	ptcd1	96	74.711	Anabas_testudineus
ENSSDUG00000015671	ptcd1	83	50.426	ENSAPLG00000006862	-	91	50.426	Anas_platyrhynchos
ENSSDUG00000015671	ptcd1	89	47.799	ENSACAG00000012871	-	83	47.799	Anolis_carolinensis
ENSSDUG00000015671	ptcd1	84	48.469	ENSANAG00000035790	-	88	47.682	Aotus_nancymaae
ENSSDUG00000015671	ptcd1	100	72.006	ENSACLG00000002824	ptcd1	96	72.006	Astatotilapia_calliptera
ENSSDUG00000015671	ptcd1	84	51.461	ENSAMXG00000037292	ptcd1	90	49.845	Astyanax_mexicanus
ENSSDUG00000015671	ptcd1	95	45.833	ENSBTAG00000020440	-	85	45.911	Bos_taurus
ENSSDUG00000015671	ptcd1	86	47.249	ENSCJAG00000015815	-	87	47.267	Callithrix_jacchus
ENSSDUG00000015671	ptcd1	94	46.280	ENSCAFG00000015055	-	88	46.280	Canis_familiaris
ENSSDUG00000015671	ptcd1	94	46.280	ENSCAFG00020014480	-	88	46.280	Canis_lupus_dingo
ENSSDUG00000015671	ptcd1	95	45.977	ENSCHIG00000027000	-	96	46.055	Capra_hircus
ENSSDUG00000015671	ptcd1	95	44.255	ENSTSYG00000029495	-	98	44.915	Carlito_syrichta
ENSSDUG00000015671	ptcd1	84	48.814	ENSCAPG00000014660	-	92	47.869	Cavia_aperea
ENSSDUG00000015671	ptcd1	96	46.381	ENSCPOG00000001780	-	97	45.166	Cavia_porcellus
ENSSDUG00000015671	ptcd1	86	47.471	ENSCCAG00000034025	-	87	47.488	Cebus_capucinus
ENSSDUG00000015671	ptcd1	86	47.164	ENSCATG00000040859	-	88	46.825	Cercocebus_atys
ENSSDUG00000015671	ptcd1	97	45.376	ENSCLAG00000006354	-	99	45.148	Chinchilla_lanigera
ENSSDUG00000015671	ptcd1	79	47.257	ENSCSAG00000017794	-	83	47.276	Chlorocebus_sabaeus
ENSSDUG00000015671	ptcd1	91	45.894	ENSCPBG00000020866	-	90	46.041	Chrysemys_picta_bellii
ENSSDUG00000015671	ptcd1	83	30.449	ENSCING00000007717	-	99	30.449	Ciona_intestinalis
ENSSDUG00000015671	ptcd1	88	46.226	ENSCANG00000023441	-	90	45.807	Colobus_angolensis_palliatus
ENSSDUG00000015671	ptcd1	94	46.177	ENSCGRG00001023686	Ptcd1	95	45.753	Cricetulus_griseus_chok1gshd
ENSSDUG00000015671	ptcd1	94	46.165	ENSCGRG00000015031	Ptcd1	95	46.165	Cricetulus_griseus_crigri
ENSSDUG00000015671	ptcd1	98	62.593	ENSCSEG00000002378	ptcd1	93	62.891	Cynoglossus_semilaevis
ENSSDUG00000015671	ptcd1	98	66.667	ENSCVAG00000015826	ptcd1	95	65.552	Cyprinodon_variegatus
ENSSDUG00000015671	ptcd1	96	66.920	ENSCVAG00000003621	ptcd1	98	66.567	Cyprinodon_variegatus
ENSSDUG00000015671	ptcd1	87	53.724	ENSDARG00000076176	ptcd1	89	53.724	Danio_rerio
ENSSDUG00000015671	ptcd1	96	44.239	ENSDNOG00000009957	-	99	44.681	Dasypus_novemcinctus
ENSSDUG00000015671	ptcd1	96	45.643	ENSDORG00000000740	Ptcd1	96	45.643	Dipodomys_ordii
ENSSDUG00000015671	ptcd1	82	37.893	ENSEBUG00000014515	ptcd1	93	37.655	Eptatretus_burgeri
ENSSDUG00000015671	ptcd1	96	44.808	ENSEASG00005002480	-	98	44.979	Equus_asinus_asinus
ENSSDUG00000015671	ptcd1	96	44.666	ENSECAG00000016617	-	97	45.286	Equus_caballus
ENSSDUG00000015671	ptcd1	98	54.036	ENSELUG00000016517	ptcd1	97	54.036	Esox_lucius
ENSSDUG00000015671	ptcd1	95	45.376	ENSFCAG00000015069	-	97	45.376	Felis_catus
ENSSDUG00000015671	ptcd1	83	47.603	ENSFALG00000013803	-	83	47.769	Ficedula_albicollis
ENSSDUG00000015671	ptcd1	86	48.148	ENSFDAG00000006393	-	87	48.309	Fukomys_damarensis
ENSSDUG00000015671	ptcd1	75	72.989	ENSFHEG00000012491	ptcd1	93	70.632	Fundulus_heteroclitus
ENSSDUG00000015671	ptcd1	85	64.874	ENSGMOG00000007639	ptcd1	94	64.874	Gadus_morhua
ENSSDUG00000015671	ptcd1	86	46.262	ENSGALG00000004711	-	88	47.123	Gallus_gallus
ENSSDUG00000015671	ptcd1	88	70.744	ENSGAFG00000013175	ptcd1	90	67.767	Gambusia_affinis
ENSSDUG00000015671	ptcd1	86	72.333	ENSGACG00000016607	ptcd1	96	70.418	Gasterosteus_aculeatus
ENSSDUG00000015671	ptcd1	86	45.854	ENSGAGG00000021832	-	91	46.504	Gopherus_agassizii
ENSSDUG00000015671	ptcd1	86	47.164	ENSGGOG00000015123	-	88	46.975	Gorilla_gorilla
ENSSDUG00000015671	ptcd1	100	72.439	ENSHBUG00000018275	ptcd1	96	72.439	Haplochromis_burtoni
ENSSDUG00000015671	ptcd1	94	45.217	ENSHGLG00000017621	-	97	45.507	Heterocephalus_glaber_female
ENSSDUG00000015671	ptcd1	94	45.217	ENSHGLG00100007218	-	97	45.507	Heterocephalus_glaber_male
ENSSDUG00000015671	ptcd1	98	60.030	ENSHCOG00000010784	ptcd1	95	60.534	Hippocampus_comes
ENSSDUG00000015671	ptcd1	87	48.485	ENSSTOG00000001682	-	88	48.485	Ictidomys_tridecemlineatus
ENSSDUG00000015671	ptcd1	88	47.096	ENSJJAG00000000319	Ptcd1	91	47.551	Jaculus_jaculus
ENSSDUG00000015671	ptcd1	100	66.092	ENSKMAG00000008708	ptcd1	96	66.092	Kryptolebias_marmoratus
ENSSDUG00000015671	ptcd1	98	69.310	ENSLBEG00000008061	ptcd1	96	68.195	Labrus_bergylta
ENSSDUG00000015671	ptcd1	84	49.408	ENSLACG00000011172	ptcd1	82	49.746	Latimeria_chalumnae
ENSSDUG00000015671	ptcd1	86	51.572	ENSLOCG00000004833	ptcd1	95	51.220	Lepisosteus_oculatus
ENSSDUG00000015671	ptcd1	96	43.820	ENSLAFG00000002588	-	99	44.382	Loxodonta_africana
ENSSDUG00000015671	ptcd1	86	47.326	ENSMFAG00000041324	-	88	46.984	Macaca_fascicularis
ENSSDUG00000015671	ptcd1	86	47.326	ENSMMUG00000030408	-	88	46.984	Macaca_mulatta
ENSSDUG00000015671	ptcd1	86	47.326	ENSMNEG00000043786	-	88	46.984	Macaca_nemestrina
ENSSDUG00000015671	ptcd1	86	35.796	ENSMLEG00000031179	-	86	37.459	Mandrillus_leucophaeus
ENSSDUG00000015671	ptcd1	98	75.559	ENSMAMG00000007623	ptcd1	95	73.654	Mastacembelus_armatus
ENSSDUG00000015671	ptcd1	100	71.861	ENSMZEG00005012722	ptcd1	96	71.861	Maylandia_zebra
ENSSDUG00000015671	ptcd1	90	46.390	ENSMGAG00000004211	-	84	46.248	Meleagris_gallopavo
ENSSDUG00000015671	ptcd1	96	43.670	ENSMICG00000017428	-	99	44.176	Microcebus_murinus
ENSSDUG00000015671	ptcd1	99	71.306	ENSMMOG00000020243	ptcd1	99	71.605	Mola_mola
ENSSDUG00000015671	ptcd1	95	42.356	ENSMODG00000001350	-	96	42.356	Monodelphis_domestica
ENSSDUG00000015671	ptcd1	100	76.040	ENSMALG00000018442	ptcd1	96	76.040	Monopterus_albus
ENSSDUG00000015671	ptcd1	94	45.630	MGP_CAROLIEiJ_G0028011	Ptcd1	95	45.926	Mus_caroli
ENSSDUG00000015671	ptcd1	94	45.037	ENSMUSG00000029624	Ptcd1	95	45.306	Mus_musculus
ENSSDUG00000015671	ptcd1	90	47.014	MGP_PahariEiJ_G0024580	Ptcd1	94	47.147	Mus_pahari
ENSSDUG00000015671	ptcd1	94	45.455	MGP_SPRETEiJ_G0029012	Ptcd1	95	45.455	Mus_spretus
ENSSDUG00000015671	ptcd1	96	47.198	ENSMPUG00000016518	-	95	47.345	Mustela_putorius_furo
ENSSDUG00000015671	ptcd1	95	46.088	ENSMLUG00000010994	-	92	46.790	Myotis_lucifugus
ENSSDUG00000015671	ptcd1	99	72.861	ENSNBRG00000010079	ptcd1	97	72.861	Neolamprologus_brichardi
ENSSDUG00000015671	ptcd1	80	44.464	ENSNLEG00000011060	-	96	44.123	Nomascus_leucogenys
ENSSDUG00000015671	ptcd1	86	45.760	ENSMEUG00000006930	-	87	45.833	Notamacropus_eugenii
ENSSDUG00000015671	ptcd1	79	53.901	ENSOPRG00000013647	-	77	59.504	Ochotona_princeps
ENSSDUG00000015671	ptcd1	87	72.047	ENSONIG00000003168	ptcd1	99	72.047	Oreochromis_niloticus
ENSSDUG00000015671	ptcd1	81	45.423	ENSOANG00000007728	-	75	45.611	Ornithorhynchus_anatinus
ENSSDUG00000015671	ptcd1	93	46.547	ENSOCUG00000010584	-	92	46.547	Oryctolagus_cuniculus
ENSSDUG00000015671	ptcd1	97	67.511	ENSORLG00000009275	ptcd1	96	67.511	Oryzias_latipes
ENSSDUG00000015671	ptcd1	97	67.761	ENSORLG00020000988	ptcd1	96	67.761	Oryzias_latipes_hni
ENSSDUG00000015671	ptcd1	97	67.113	ENSORLG00015010557	ptcd1	96	67.113	Oryzias_latipes_hsok
ENSSDUG00000015671	ptcd1	97	67.164	ENSOMEG00000020627	ptcd1	99	65.123	Oryzias_melastigma
ENSSDUG00000015671	ptcd1	88	45.687	ENSOGAG00000010877	-	89	45.687	Otolemur_garnettii
ENSSDUG00000015671	ptcd1	95	42.264	ENSOARG00000018676	-	97	42.346	Ovis_aries
ENSSDUG00000015671	ptcd1	86	47.164	ENSPPAG00000036024	-	88	46.975	Pan_paniscus
ENSSDUG00000015671	ptcd1	95	45.693	ENSPPRG00000003478	-	97	45.693	Panthera_pardus
ENSSDUG00000015671	ptcd1	86	47.488	ENSPTRG00000019452	-	88	47.293	Pan_troglodytes
ENSSDUG00000015671	ptcd1	86	47.488	ENSPANG00000016730	-	88	47.143	Papio_anubis
ENSSDUG00000015671	ptcd1	83	53.516	ENSPKIG00000014215	ptcd1	84	53.663	Paramormyrops_kingsleyae
ENSSDUG00000015671	ptcd1	84	48.571	ENSPSIG00000011184	-	98	48.908	Pelodiscus_sinensis
ENSSDUG00000015671	ptcd1	73	43.021	ENSPMAG00000009667	ptcd1	100	43.021	Petromyzon_marinus
ENSSDUG00000015671	ptcd1	87	45.597	ENSPCIG00000024778	-	87	45.176	Phascolarctos_cinereus
ENSSDUG00000015671	ptcd1	88	70.016	ENSPFOG00000004458	ptcd1	89	67.244	Poecilia_formosa
ENSSDUG00000015671	ptcd1	96	66.212	ENSPLAG00000011051	ptcd1	96	63.610	Poecilia_latipinna
ENSSDUG00000015671	ptcd1	88	70.328	ENSPMEG00000020547	ptcd1	89	67.555	Poecilia_mexicana
ENSSDUG00000015671	ptcd1	90	66.403	ENSPREG00000000059	ptcd1	88	68.058	Poecilia_reticulata
ENSSDUG00000015671	ptcd1	87	46.019	ENSPPYG00000017377	-	93	46.019	Pongo_abelii
ENSSDUG00000015671	ptcd1	78	58.779	ENSPCAG00000001852	-	85	58.779	Procavia_capensis
ENSSDUG00000015671	ptcd1	84	48.305	ENSPCOG00000018596	-	96	45.361	Propithecus_coquereli
ENSSDUG00000015671	ptcd1	66	50.137	ENSPVAG00000007529	-	69	50.137	Pteropus_vampyrus
ENSSDUG00000015671	ptcd1	100	72.150	ENSPNYG00000019993	ptcd1	96	72.150	Pundamilia_nyererei
ENSSDUG00000015671	ptcd1	85	54.077	ENSPNAG00000014931	ptcd1	89	53.045	Pygocentrus_nattereri
ENSSDUG00000015671	ptcd1	95	44.942	ENSRNOG00000000987	Ptcd1	98	45.231	Rattus_norvegicus
ENSSDUG00000015671	ptcd1	87	46.508	ENSRBIG00000043393	-	88	46.508	Rhinopithecus_bieti
ENSSDUG00000015671	ptcd1	87	46.795	ENSRROG00000036420	-	88	46.795	Rhinopithecus_roxellana
ENSSDUG00000015671	ptcd1	86	47.954	ENSSBOG00000024114	-	87	47.967	Saimiri_boliviensis_boliviensis
ENSSDUG00000015671	ptcd1	84	47.483	ENSSHAG00000011376	-	89	47.483	Sarcophilus_harrisii
ENSSDUG00000015671	ptcd1	87	53.016	ENSSFOG00015007909	ptcd1	83	53.016	Scleropages_formosus
ENSSDUG00000015671	ptcd1	86	75.342	ENSSMAG00000000218	ptcd1	94	75.597	Scophthalmus_maximus
ENSSDUG00000015671	ptcd1	100	96.889	ENSSLDG00000014261	ptcd1	100	96.889	Seriola_lalandi_dorsalis
ENSSDUG00000015671	ptcd1	86	45.166	ENSSPUG00000003540	-	84	45.483	Sphenodon_punctatus
ENSSDUG00000015671	ptcd1	100	71.143	ENSSPAG00000011049	ptcd1	96	71.143	Stegastes_partitus
ENSSDUG00000015671	ptcd1	86	47.642	ENSSSCG00000007622	-	98	46.224	Sus_scrofa
ENSSDUG00000015671	ptcd1	83	47.603	ENSTGUG00000007563	-	95	48.288	Taeniopygia_guttata
ENSSDUG00000015671	ptcd1	98	66.176	ENSTRUG00000013471	ptcd1	96	64.723	Takifugu_rubripes
ENSSDUG00000015671	ptcd1	99	63.808	ENSTNIG00000008271	ptcd1	99	63.808	Tetraodon_nigroviridis
ENSSDUG00000015671	ptcd1	95	44.763	ENSTBEG00000011021	-	97	44.763	Tupaia_belangeri
ENSSDUG00000015671	ptcd1	95	44.913	ENSTTRG00000003006	-	97	44.913	Tursiops_truncatus
ENSSDUG00000015671	ptcd1	87	48.293	ENSUAMG00000008049	-	86	48.293	Ursus_americanus
ENSSDUG00000015671	ptcd1	94	46.577	ENSVVUG00000008836	-	95	46.577	Vulpes_vulpes
ENSSDUG00000015671	ptcd1	84	47.804	ENSXETG00000009891	ptcd1	88	45.765	Xenopus_tropicalis
ENSSDUG00000015671	ptcd1	88	72.259	ENSXMAG00000015540	ptcd1	89	68.829	Xiphophorus_maculatus