EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000015745 (Gene tree)
Gene ID: 111239214
Gene Symbol: polr1c
Alias: zgc:65973
Full Name: RNA polymerase I and III subunit C
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 11749 bases
Position: chrBDQW01002174.1:445705-457453
Accession: 111239214
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000021673	RNA_pol_A_bac	PF01000.26	4.7e-31	1	1
ENSSDUP00000021697	RNA_pol_A_bac	PF01000.26	5.6e-27	1	1
ENSSDUP00000021697	RNA_pol_L	PF01193.24	1.2e-23	1	1
ENSSDUP00000021673	RNA_pol_L	PF01193.24	2.4e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000022067	-	1158	XM_022769042	ENSSDUP00000021673	384 (aa)	XP_022624763	-
ENSSDUT00000022092	-	891	-	ENSSDUP00000021697	296 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000015745's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03020	RNA polymerase	KEGG
sdu04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000015745's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000015745	polr1c	100	72.391	ENSG00000171453	POLR1C	100	75.806	Homo_sapiens
ENSSDUG00000015745	polr1c	91	91.453	ENSAPOG00000024356	polr1c	100	91.453	Acanthochromis_polyacanthus
ENSSDUG00000015745	polr1c	92	73.864	ENSAMEG00000012205	POLR1C	99	73.295	Ailuropoda_melanoleuca
ENSSDUG00000015745	polr1c	86	80.967	ENSACIG00000016268	polr1c	91	80.967	Amphilophus_citrinellus
ENSSDUG00000015745	polr1c	94	88.950	ENSAOCG00000011687	polr1c	100	88.950	Amphiprion_ocellaris
ENSSDUG00000015745	polr1c	91	91.168	ENSAPEG00000002433	polr1c	100	91.168	Amphiprion_percula
ENSSDUG00000015745	polr1c	90	94.524	ENSATEG00000005985	polr1c	99	93.983	Anabas_testudineus
ENSSDUG00000015745	polr1c	79	72.039	ENSAPLG00000002908	POLR1C	100	71.382	Anas_platyrhynchos
ENSSDUG00000015745	polr1c	86	69.880	ENSACAG00000009764	POLR1C	93	69.578	Anolis_carolinensis
ENSSDUG00000015745	polr1c	100	72.727	ENSANAG00000025805	POLR1C	100	72.727	Aotus_nancymaae
ENSSDUG00000015745	polr1c	100	91.919	ENSACLG00000006573	polr1c	100	92.308	Astatotilapia_calliptera
ENSSDUG00000015745	polr1c	58	30.769	ENSACLG00000004854	polr2c	78	31.500	Astatotilapia_calliptera
ENSSDUG00000015745	polr1c	100	83.838	ENSAMXG00000012062	polr1c	100	83.838	Astyanax_mexicanus
ENSSDUG00000015745	polr1c	91	73.352	ENSBTAG00000018969	POLR1C	99	73.066	Bos_taurus
ENSSDUG00000015745	polr1c	91	46.006	WBGene00019275	rpac-40	98	45.455	Caenorhabditis_elegans
ENSSDUG00000015745	polr1c	100	72.391	ENSCJAG00000005594	POLR1C	100	72.391	Callithrix_jacchus
ENSSDUG00000015745	polr1c	91	73.066	ENSCAFG00000001872	POLR1C	99	72.493	Canis_familiaris
ENSSDUG00000015745	polr1c	58	32.967	ENSCAFG00020007660	POLR2C	60	31.336	Canis_lupus_dingo
ENSSDUG00000015745	polr1c	91	73.066	ENSCAFG00020012018	POLR1C	99	72.493	Canis_lupus_dingo
ENSSDUG00000015745	polr1c	91	73.352	ENSCHIG00000004352	POLR1C	99	72.779	Capra_hircus
ENSSDUG00000015745	polr1c	99	72.542	ENSTSYG00000011921	POLR1C	99	72.727	Carlito_syrichta
ENSSDUG00000015745	polr1c	79	74.257	ENSCAPG00000015364	POLR1C	88	73.597	Cavia_aperea
ENSSDUG00000015745	polr1c	91	73.789	ENSCPOG00000038098	POLR1C	100	73.219	Cavia_porcellus
ENSSDUG00000015745	polr1c	99	72.203	ENSCCAG00000020169	POLR1C	99	72.206	Cebus_capucinus
ENSSDUG00000015745	polr1c	100	72.391	ENSCATG00000044045	POLR1C	100	72.650	Cercocebus_atys
ENSSDUG00000015745	polr1c	91	74.074	ENSCLAG00000009266	POLR1C	100	73.504	Chinchilla_lanigera
ENSSDUG00000015745	polr1c	58	33.516	ENSCLAG00000013676	POLR2C	52	31.797	Chinchilla_lanigera
ENSSDUG00000015745	polr1c	91	72.080	ENSCSAG00000011913	POLR1C	100	71.795	Chlorocebus_sabaeus
ENSSDUG00000015745	polr1c	55	69.340	ENSCHOG00000006601	POLR1C	100	69.340	Choloepus_hoffmanni
ENSSDUG00000015745	polr1c	91	75.072	ENSCPBG00000025203	POLR1C	99	74.499	Chrysemys_picta_bellii
ENSSDUG00000015745	polr1c	91	54.441	ENSCING00000003563	-	99	54.441	Ciona_intestinalis
ENSSDUG00000015745	polr1c	100	72.727	ENSCANG00000043167	POLR1C	100	72.727	Colobus_angolensis_palliatus
ENSSDUG00000015745	polr1c	91	72.206	ENSCGRG00001017533	Polr1c	99	71.633	Cricetulus_griseus_chok1gshd
ENSSDUG00000015745	polr1c	79	73.267	ENSCGRG00000013225	Polr1c	100	72.607	Cricetulus_griseus_crigri
ENSSDUG00000015745	polr1c	91	88.319	ENSCSEG00000018097	polr1c	100	87.464	Cynoglossus_semilaevis
ENSSDUG00000015745	polr1c	55	91.981	ENSCVAG00000005684	polr1c	85	91.981	Cyprinodon_variegatus
ENSSDUG00000015745	polr1c	93	82.022	ENSDARG00000039400	polr1c	97	81.180	Danio_rerio
ENSSDUG00000015745	polr1c	91	74.074	ENSDNOG00000042693	POLR1C	100	73.504	Dasypus_novemcinctus
ENSSDUG00000015745	polr1c	91	73.926	ENSDORG00000000429	Polr1c	99	73.352	Dipodomys_ordii
ENSSDUG00000015745	polr1c	83	54.259	FBgn0031657	CG3756	93	52.366	Drosophila_melanogaster
ENSSDUG00000015745	polr1c	91	69.914	ENSETEG00000010807	POLR1C	99	69.628	Echinops_telfairi
ENSSDUG00000015745	polr1c	91	67.622	ENSEBUG00000013725	polr1c	99	67.049	Eptatretus_burgeri
ENSSDUG00000015745	polr1c	91	72.779	ENSEASG00005003338	POLR1C	99	72.206	Equus_asinus_asinus
ENSSDUG00000015745	polr1c	99	72.542	ENSECAG00000023516	POLR1C	99	72.542	Equus_caballus
ENSSDUG00000015745	polr1c	91	74.212	ENSEEUG00000005471	POLR1C	99	73.639	Erinaceus_europaeus
ENSSDUG00000015745	polr1c	100	85.522	ENSELUG00000013027	polr1c	100	85.522	Esox_lucius
ENSSDUG00000015745	polr1c	99	73.220	ENSFCAG00000009735	POLR1C	99	73.220	Felis_catus
ENSSDUG00000015745	polr1c	85	71.865	ENSFALG00000012111	POLR1C	100	71.254	Ficedula_albicollis
ENSSDUG00000015745	polr1c	91	73.066	ENSFDAG00000008428	POLR1C	99	72.493	Fukomys_damarensis
ENSSDUG00000015745	polr1c	58	85.227	ENSFHEG00000013867	-	84	88.439	Fundulus_heteroclitus
ENSSDUG00000015745	polr1c	100	90.203	ENSFHEG00000000262	polr1c	100	90.203	Fundulus_heteroclitus
ENSSDUG00000015745	polr1c	85	82.012	ENSGMOG00000013878	polr1c	100	81.402	Gadus_morhua
ENSSDUG00000015745	polr1c	91	72.779	ENSGALG00000010349	POLR1C	99	72.206	Gallus_gallus
ENSSDUG00000015745	polr1c	91	90.598	ENSGAFG00000010153	polr1c	100	90.598	Gambusia_affinis
ENSSDUG00000015745	polr1c	93	88.038	ENSGACG00000002453	polr1c	100	89.459	Gasterosteus_aculeatus
ENSSDUG00000015745	polr1c	90	74.783	ENSGAGG00000010640	POLR1C	99	74.203	Gopherus_agassizii
ENSSDUG00000015745	polr1c	100	72.391	ENSGGOG00000010903	POLR1C	100	72.391	Gorilla_gorilla
ENSSDUG00000015745	polr1c	91	82.336	ENSHBUG00000017816	polr1c	100	81.481	Haplochromis_burtoni
ENSSDUG00000015745	polr1c	58	30.769	ENSHBUG00000023040	polr2c	78	31.500	Haplochromis_burtoni
ENSSDUG00000015745	polr1c	91	72.779	ENSHGLG00000019441	POLR1C	99	72.206	Heterocephalus_glaber_female
ENSSDUG00000015745	polr1c	91	73.066	ENSHGLG00100005970	POLR1C	99	72.493	Heterocephalus_glaber_male
ENSSDUG00000015745	polr1c	90	84.348	ENSHCOG00000002179	polr1c	99	83.668	Hippocampus_comes
ENSSDUG00000015745	polr1c	90	84.438	ENSIPUG00000024464	polr1c	99	83.862	Ictalurus_punctatus
ENSSDUG00000015745	polr1c	58	33.516	ENSSTOG00000015150	-	50	31.797	Ictidomys_tridecemlineatus
ENSSDUG00000015745	polr1c	91	73.066	ENSSTOG00000010631	POLR1C	99	72.493	Ictidomys_tridecemlineatus
ENSSDUG00000015745	polr1c	91	73.066	ENSJJAG00000023110	Polr1c	99	72.493	Jaculus_jaculus
ENSSDUG00000015745	polr1c	100	88.851	ENSKMAG00000014305	polr1c	100	88.851	Kryptolebias_marmoratus
ENSSDUG00000015745	polr1c	91	92.308	ENSLBEG00000014925	polr1c	100	92.308	Labrus_bergylta
ENSSDUG00000015745	polr1c	94	58.333	ENSLACG00000012567	POLR1C	98	59.524	Latimeria_chalumnae
ENSSDUG00000015745	polr1c	92	80.114	ENSLOCG00000016710	polr1c	96	79.545	Lepisosteus_oculatus
ENSSDUG00000015745	polr1c	58	32.203	ENSLAFG00000027230	POLR2C	74	30.660	Loxodonta_africana
ENSSDUG00000015745	polr1c	79	74.098	ENSLAFG00000026248	POLR1C	100	73.443	Loxodonta_africana
ENSSDUG00000015745	polr1c	100	72.054	ENSMFAG00000046295	POLR1C	100	72.365	Macaca_fascicularis
ENSSDUG00000015745	polr1c	100	72.054	ENSMMUG00000015192	POLR1C	100	72.365	Macaca_mulatta
ENSSDUG00000015745	polr1c	100	72.054	ENSMNEG00000028073	POLR1C	100	72.365	Macaca_nemestrina
ENSSDUG00000015745	polr1c	100	72.054	ENSMLEG00000034818	POLR1C	100	72.365	Mandrillus_leucophaeus
ENSSDUG00000015745	polr1c	100	92.256	ENSMAMG00000008700	polr1c	100	92.593	Mastacembelus_armatus
ENSSDUG00000015745	polr1c	100	91.582	ENSMZEG00005018545	polr1c	100	92.023	Maylandia_zebra
ENSSDUG00000015745	polr1c	77	69.153	ENSMGAG00000011020	POLR1C	100	68.475	Meleagris_gallopavo
ENSSDUG00000015745	polr1c	91	72.493	ENSMAUG00000014329	Polr1c	99	71.920	Mesocricetus_auratus
ENSSDUG00000015745	polr1c	99	71.525	ENSMICG00000005027	POLR1C	99	71.525	Microcebus_murinus
ENSSDUG00000015745	polr1c	91	72.779	ENSMOCG00000017549	Polr1c	99	72.206	Microtus_ochrogaster
ENSSDUG00000015745	polr1c	100	87.838	ENSMMOG00000005380	polr1c	100	87.838	Mola_mola
ENSSDUG00000015745	polr1c	77	73.898	ENSMODG00000018964	POLR1C	100	73.559	Monodelphis_domestica
ENSSDUG00000015745	polr1c	100	92.256	ENSMALG00000011711	polr1c	100	92.256	Monopterus_albus
ENSSDUG00000015745	polr1c	91	63.897	MGP_CAROLIEiJ_G0021662	Polr1c	100	71.212	Mus_caroli
ENSSDUG00000015745	polr1c	91	72.779	ENSMUSG00000067148	Polr1c	98	74.257	Mus_musculus
ENSSDUG00000015745	polr1c	91	73.639	MGP_PahariEiJ_G0020654	Polr1c	98	75.248	Mus_pahari
ENSSDUG00000015745	polr1c	91	72.779	MGP_SPRETEiJ_G0022574	Polr1c	98	74.257	Mus_spretus
ENSSDUG00000015745	polr1c	92	73.295	ENSMPUG00000012916	POLR1C	91	72.727	Mustela_putorius_furo
ENSSDUG00000015745	polr1c	92	73.295	ENSMLUG00000017751	POLR1C	100	72.727	Myotis_lucifugus
ENSSDUG00000015745	polr1c	91	72.779	ENSNGAG00000023487	Polr1c	100	72.881	Nannospalax_galili
ENSSDUG00000015745	polr1c	100	92.230	ENSNBRG00000018742	polr1c	100	92.230	Neolamprologus_brichardi
ENSSDUG00000015745	polr1c	91	73.219	ENSNLEG00000004035	POLR1C	100	72.650	Nomascus_leucogenys
ENSSDUG00000015745	polr1c	100	62.824	ENSMEUG00000006778	POLR1C	100	62.824	Notamacropus_eugenii
ENSSDUG00000015745	polr1c	80	68.776	ENSOPRG00000000145	POLR1C	99	72.222	Ochotona_princeps
ENSSDUG00000015745	polr1c	57	70.642	ENSODEG00000017109	-	97	70.755	Octodon_degus
ENSSDUG00000015745	polr1c	91	73.789	ENSODEG00000015831	-	100	73.219	Octodon_degus
ENSSDUG00000015745	polr1c	92	92.898	ENSONIG00000013133	polr1c	99	92.898	Oreochromis_niloticus
ENSSDUG00000015745	polr1c	91	70.774	ENSOANG00000003043	POLR1C	99	70.201	Ornithorhynchus_anatinus
ENSSDUG00000015745	polr1c	92	71.875	ENSOCUG00000005504	POLR1C	100	71.307	Oryctolagus_cuniculus
ENSSDUG00000015745	polr1c	90	85.014	ENSORLG00000019743	polr1c	99	85.014	Oryzias_latipes
ENSSDUG00000015745	polr1c	90	85.879	ENSORLG00020006489	POLR1C	99	85.879	Oryzias_latipes_hni
ENSSDUG00000015745	polr1c	70	67.153	ENSORLG00020005555	polr1c	81	66.667	Oryzias_latipes_hni
ENSSDUG00000015745	polr1c	90	85.014	ENSORLG00015013322	polr1c	99	85.014	Oryzias_latipes_hsok
ENSSDUG00000015745	polr1c	90	86.377	ENSOMEG00000016527	polr1c	98	86.377	Oryzias_melastigma
ENSSDUG00000015745	polr1c	91	72.493	ENSOGAG00000016318	POLR1C	99	71.633	Otolemur_garnettii
ENSSDUG00000015745	polr1c	91	73.066	ENSOARG00000007503	POLR1C	99	72.779	Ovis_aries
ENSSDUG00000015745	polr1c	100	72.391	ENSPPAG00000043678	POLR1C	100	72.391	Pan_paniscus
ENSSDUG00000015745	polr1c	99	73.220	ENSPPRG00000009760	POLR1C	99	73.220	Panthera_pardus
ENSSDUG00000015745	polr1c	99	73.220	ENSPTIG00000014813	POLR1C	99	73.220	Panthera_tigris_altaica
ENSSDUG00000015745	polr1c	100	72.391	ENSPTRG00000018202	POLR1C	100	72.391	Pan_troglodytes
ENSSDUG00000015745	polr1c	100	72.391	ENSPANG00000009025	POLR1C	100	72.391	Papio_anubis
ENSSDUG00000015745	polr1c	100	82.155	ENSPKIG00000009858	polr1c	100	82.155	Paramormyrops_kingsleyae
ENSSDUG00000015745	polr1c	92	74.432	ENSPSIG00000012580	POLR1C	95	73.864	Pelodiscus_sinensis
ENSSDUG00000015745	polr1c	100	88.889	ENSPMGG00000012121	polr1c	100	88.889	Periophthalmus_magnuspinnatus
ENSSDUG00000015745	polr1c	58	30.769	ENSPMGG00000021249	polr2c	81	31.019	Periophthalmus_magnuspinnatus
ENSSDUG00000015745	polr1c	91	72.493	ENSPEMG00000006970	Polr1c	99	71.920	Peromyscus_maniculatus_bairdii
ENSSDUG00000015745	polr1c	58	34.066	ENSPMAG00000004827	polr2c	81	34.000	Petromyzon_marinus
ENSSDUG00000015745	polr1c	90	72.000	ENSPMAG00000005560	polr1c	99	71.429	Petromyzon_marinus
ENSSDUG00000015745	polr1c	100	73.401	ENSPCIG00000028137	POLR1C	100	73.401	Phascolarctos_cinereus
ENSSDUG00000015745	polr1c	91	90.313	ENSPFOG00000014342	POLR1C	100	90.313	Poecilia_formosa
ENSSDUG00000015745	polr1c	92	89.831	ENSPFOG00000014357	polr1c	99	89.831	Poecilia_formosa
ENSSDUG00000015745	polr1c	55	91.038	ENSPLAG00000004111	polr1c	99	81.915	Poecilia_latipinna
ENSSDUG00000015745	polr1c	100	88.552	ENSPMEG00000011877	-	100	90.313	Poecilia_mexicana
ENSSDUG00000015745	polr1c	100	88.552	ENSPMEG00000008420	polr1c	100	90.313	Poecilia_mexicana
ENSSDUG00000015745	polr1c	91	89.174	ENSPREG00000007985	polr1c	100	88.889	Poecilia_reticulata
ENSSDUG00000015745	polr1c	91	72.650	ENSPPYG00000016645	POLR1C	100	72.080	Pongo_abelii
ENSSDUG00000015745	polr1c	99	72.203	ENSPCOG00000024628	POLR1C	99	72.203	Propithecus_coquereli
ENSSDUG00000015745	polr1c	91	67.335	ENSPVAG00000005689	POLR1C	99	67.335	Pteropus_vampyrus
ENSSDUG00000015745	polr1c	91	92.023	ENSPNYG00000003620	polr1c	100	92.023	Pundamilia_nyererei
ENSSDUG00000015745	polr1c	91	84.046	ENSPNAG00000008443	polr1c	100	83.476	Pygocentrus_nattereri
ENSSDUG00000015745	polr1c	91	72.779	ENSRNOG00000019079	Polr1c	99	72.206	Rattus_norvegicus
ENSSDUG00000015745	polr1c	100	72.727	ENSRBIG00000007155	POLR1C	100	72.727	Rhinopithecus_bieti
ENSSDUG00000015745	polr1c	100	72.727	ENSRROG00000000257	POLR1C	100	72.727	Rhinopithecus_roxellana
ENSSDUG00000015745	polr1c	50	31.000	YIL021W	RPB3	55	31.000	Saccharomyces_cerevisiae
ENSSDUG00000015745	polr1c	83	48.428	YPR110C	RPC40	94	48.428	Saccharomyces_cerevisiae
ENSSDUG00000015745	polr1c	99	72.203	ENSSBOG00000025735	POLR1C	99	72.258	Saimiri_boliviensis_boliviensis
ENSSDUG00000015745	polr1c	91	65.812	ENSSHAG00000014456	POLR1C	100	65.527	Sarcophilus_harrisii
ENSSDUG00000015745	polr1c	91	83.476	ENSSFOG00015019860	polr1c	100	82.906	Scleropages_formosus
ENSSDUG00000015745	polr1c	91	92.023	ENSSMAG00000018865	polr1c	100	90.883	Scophthalmus_maximus
ENSSDUG00000015745	polr1c	100	99.324	ENSSLDG00000018285	polr1c	100	99.324	Seriola_lalandi_dorsalis
ENSSDUG00000015745	polr1c	90	71.884	ENSSPUG00000011822	POLR1C	99	71.304	Sphenodon_punctatus
ENSSDUG00000015745	polr1c	91	91.738	ENSSPAG00000022369	polr1c	100	91.738	Stegastes_partitus
ENSSDUG00000015745	polr1c	92	73.011	ENSSSCG00000028007	POLR1C	99	72.443	Sus_scrofa
ENSSDUG00000015745	polr1c	88	72.619	ENSTGUG00000009159	POLR1C	99	72.024	Taeniopygia_guttata
ENSSDUG00000015745	polr1c	100	86.242	ENSTRUG00000006264	polr1c	100	86.895	Takifugu_rubripes
ENSSDUG00000015745	polr1c	70	71.161	ENSTTRG00000006344	POLR1C	76	70.412	Tursiops_truncatus
ENSSDUG00000015745	polr1c	91	73.639	ENSUAMG00000025602	POLR1C	99	73.066	Ursus_americanus
ENSSDUG00000015745	polr1c	91	73.639	ENSUMAG00000005938	POLR1C	99	73.066	Ursus_maritimus
ENSSDUG00000015745	polr1c	99	72.881	ENSVVUG00000028922	POLR1C	99	72.881	Vulpes_vulpes
ENSSDUG00000015745	polr1c	91	68.571	ENSXETG00000010882	polr1c	99	68.000	Xenopus_tropicalis
ENSSDUG00000015745	polr1c	91	89.459	ENSXCOG00000014185	polr1c	100	88.604	Xiphophorus_couchianus
ENSSDUG00000015745	polr1c	91	90.028	ENSXMAG00000015076	polr1c	100	90.028	Xiphophorus_maculatus