EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000015801 (Gene tree)
Gene ID: 111237065
Gene Symbol: -
Alias: rbfox3
Full Name: RNA binding protein fox-1 homolog 3-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 199149 bases
Position: chrBDQW01000807.1:842330-1041478
Accession: 111237065
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000021872	Fox-1_C	PF12414.8	8.1e-33	1	1
ENSSDUP00000021903	Fox-1_C	PF12414.8	9.6e-32	1	1
ENSSDUP00000021964	Fox-1_C	PF12414.8	6e-23	1	2
ENSSDUP00000021964	Fox-1_C	PF12414.8	6e-23	2	2
ENSSDUP00000021974	Fox-1_C	PF12414.8	1.1e-22	1	2
ENSSDUP00000021974	Fox-1_C	PF12414.8	1.1e-22	2	2
ENSSDUP00000021964	RRM_1	PF00076.22	8e-19	1	1
ENSSDUP00000021974	RRM_1	PF00076.22	8.6e-19	1	1
ENSSDUP00000021872	RRM_1	PF00076.22	1.1e-18	1	1
ENSSDUP00000021903	RRM_1	PF00076.22	1.2e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000022309	-	1062	XM_022766019	ENSSDUP00000021903	353 (aa)	XP_022621740	-
ENSSDUT00000022371	-	1047	-	ENSSDUP00000021964	348 (aa)	-	-
ENSSDUT00000022381	-	1050	-	ENSSDUP00000021974	349 (aa)	-	-
ENSSDUT00000022278	-	1089	-	ENSSDUP00000021872	362 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000015801's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000015801's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000015801	-	68	61.798	ENSSDUG00000004292	rbfox2	67	56.329
ENSSDUG00000015801	-	86	71.246	ENSSDUG00000023183	rbfox3b	95	70.805
ENSSDUG00000015801	-	99	61.082	ENSSDUG00000016413	rbfox1	99	61.856
ENSSDUG00000015801	-	69	62.182	ENSSDUG00000009511	-	62	60.473
ENSSDUG00000015801	-	78	54.785	ENSSDUG00000008705	rbfox1l	89	50.142

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000015801	-	76	93.103	ENSG00000167281	RBFOX3	99	73.381	Homo_sapiens
ENSSDUG00000015801	-	99	77.358	ENSAPOG00000021630	rbfox3b	100	76.839	Acanthochromis_polyacanthus
ENSSDUG00000015801	-	99	77.031	ENSAPOG00000015658	-	92	75.698	Acanthochromis_polyacanthus
ENSSDUG00000015801	-	96	69.565	ENSAMEG00000014170	RBFOX3	98	69.565	Ailuropoda_melanoleuca
ENSSDUG00000015801	-	84	81.518	ENSACIG00000010817	rbfox3b	95	80.208	Amphilophus_citrinellus
ENSSDUG00000015801	-	82	77.019	ENSACIG00000003768	-	90	77.019	Amphilophus_citrinellus
ENSSDUG00000015801	-	98	77.657	ENSAOCG00000012358	rbfox3b	100	76.839	Amphiprion_ocellaris
ENSSDUG00000015801	-	100	90.000	ENSAOCG00000010786	-	99	90.278	Amphiprion_ocellaris
ENSSDUG00000015801	-	99	81.268	ENSAPEG00000019081	rbfox3b	100	80.870	Amphiprion_percula
ENSSDUG00000015801	-	90	82.081	ENSAPEG00000015891	-	89	82.370	Amphiprion_percula
ENSSDUG00000015801	-	85	79.751	ENSATEG00000023101	-	98	80.062	Anabas_testudineus
ENSSDUG00000015801	-	87	71.014	ENSATEG00000019945	rbfox3b	95	71.818	Anabas_testudineus
ENSSDUG00000015801	-	96	75.069	ENSACAG00000016093	RBFOX3	100	74.515	Anolis_carolinensis
ENSSDUG00000015801	-	74	93.333	ENSANAG00000023457	RBFOX3	95	75.168	Aotus_nancymaae
ENSSDUG00000015801	-	98	78.632	ENSACLG00000020011	rbfox3b	95	81.017	Astatotilapia_calliptera
ENSSDUG00000015801	-	98	85.014	ENSACLG00000025552	-	100	85.014	Astatotilapia_calliptera
ENSSDUG00000015801	-	95	72.472	ENSAMXG00000042841	rbfox3b	100	71.629	Astyanax_mexicanus
ENSSDUG00000015801	-	100	78.628	ENSAMXG00000037246	rbfox3a	100	79.301	Astyanax_mexicanus
ENSSDUG00000015801	-	73	93.103	ENSBTAG00000006280	RBFOX3	95	65.909	Bos_taurus
ENSSDUG00000015801	-	74	93.333	ENSCJAG00000009563	RBFOX3	88	75.694	Callithrix_jacchus
ENSSDUG00000015801	-	74	76.573	ENSCAFG00000005547	RBFOX3	100	76.573	Canis_familiaris
ENSSDUG00000015801	-	76	93.333	ENSCAFG00020008126	RBFOX3	96	64.578	Canis_lupus_dingo
ENSSDUG00000015801	-	76	93.333	ENSCHIG00000009124	RBFOX3	96	64.706	Capra_hircus
ENSSDUG00000015801	-	76	93.103	ENSTSYG00000029617	RBFOX3	96	65.429	Carlito_syrichta
ENSSDUG00000015801	-	81	78.571	ENSCPOG00000021703	RBFOX3	96	64.553	Cavia_porcellus
ENSSDUG00000015801	-	75	93.333	ENSCCAG00000028450	RBFOX3	95	75.168	Cebus_capucinus
ENSSDUG00000015801	-	83	75.329	ENSCATG00000018349	RBFOX3	95	76.000	Cercocebus_atys
ENSSDUG00000015801	-	81	81.481	ENSCLAG00000006449	RBFOX3	96	65.230	Chinchilla_lanigera
ENSSDUG00000015801	-	83	75.329	ENSCSAG00000002355	RBFOX3	95	76.000	Chlorocebus_sabaeus
ENSSDUG00000015801	-	96	76.945	ENSCPBG00000010904	RBFOX3	98	77.846	Chrysemys_picta_bellii
ENSSDUG00000015801	-	76	93.333	ENSCANG00000043120	RBFOX3	95	76.000	Colobus_angolensis_palliatus
ENSSDUG00000015801	-	73	86.207	ENSCGRG00001019476	Rbfox3	96	64.183	Cricetulus_griseus_chok1gshd
ENSSDUG00000015801	-	73	86.207	ENSCGRG00000003268	Rbfox3	96	64.183	Cricetulus_griseus_crigri
ENSSDUG00000015801	-	99	63.564	ENSCSEG00000020606	RBFOX3	100	63.342	Cynoglossus_semilaevis
ENSSDUG00000015801	-	99	94.708	ENSCSEG00000015567	RBFOX3	99	94.708	Cynoglossus_semilaevis
ENSSDUG00000015801	-	96	77.994	ENSCVAG00000006882	rbfox3b	97	77.159	Cyprinodon_variegatus
ENSSDUG00000015801	-	96	62.391	ENSDARG00000074310	rbfox3b	97	70.222	Danio_rerio
ENSSDUG00000015801	-	98	79.784	ENSDARG00000010083	rbfox3a	100	80.054	Danio_rerio
ENSSDUG00000015801	-	59	93.103	ENSDNOG00000039391	RBFOX3	60	88.095	Dasypus_novemcinctus
ENSSDUG00000015801	-	80	80.702	ENSDORG00000005352	Rbfox3	96	58.696	Dipodomys_ordii
ENSSDUG00000015801	-	77	58.966	ENSEBUG00000013559	RBFOX3	72	61.450	Eptatretus_burgeri
ENSSDUG00000015801	-	97	63.115	ENSEBUG00000002129	RBFOX3	100	63.115	Eptatretus_burgeri
ENSSDUG00000015801	-	83	75.329	ENSEASG00005005059	RBFOX3	95	75.585	Equus_asinus_asinus
ENSSDUG00000015801	-	83	75.082	ENSECAG00000023811	RBFOX3	95	75.251	Equus_caballus
ENSSDUG00000015801	-	79	74.479	ENSEEUG00000013974	RBFOX3	72	74.479	Erinaceus_europaeus
ENSSDUG00000015801	-	99	77.628	ENSELUG00000017963	rbfox3b	97	78.830	Esox_lucius
ENSSDUG00000015801	-	96	73.684	ENSFCAG00000002555	RBFOX3	100	74.586	Felis_catus
ENSSDUG00000015801	-	99	59.069	ENSFALG00000012288	RBFOX3	100	59.314	Ficedula_albicollis
ENSSDUG00000015801	-	80	77.966	ENSFDAG00000007489	RBFOX3	96	59.714	Fukomys_damarensis
ENSSDUG00000015801	-	86	71.246	ENSFHEG00000008550	rbfox3b	95	70.805	Fundulus_heteroclitus
ENSSDUG00000015801	-	84	81.034	ENSGMOG00000019304	-	91	68.354	Gadus_morhua
ENSSDUG00000015801	-	96	75.556	ENSGALG00000032889	RBFOX3	100	76.389	Gallus_gallus
ENSSDUG00000015801	-	99	77.528	ENSGAFG00000005025	rbfox3b	100	76.685	Gambusia_affinis
ENSSDUG00000015801	-	80	88.596	ENSGACG00000002138	-	96	69.973	Gasterosteus_aculeatus
ENSSDUG00000015801	-	96	76.945	ENSGAGG00000020025	RBFOX3	98	76.437	Gopherus_agassizii
ENSSDUG00000015801	-	76	93.333	ENSGGOG00000012546	RBFOX3	95	76.000	Gorilla_gorilla
ENSSDUG00000015801	-	98	78.632	ENSHBUG00000018099	rbfox3b	97	76.880	Haplochromis_burtoni
ENSSDUG00000015801	-	98	81.408	ENSHBUG00000023098	-	99	81.180	Haplochromis_burtoni
ENSSDUG00000015801	-	80	78.947	ENSHGLG00000008679	RBFOX3	96	64.773	Heterocephalus_glaber_female
ENSSDUG00000015801	-	80	74.236	ENSHGLG00100014739	RBFOX3	96	61.436	Heterocephalus_glaber_male
ENSSDUG00000015801	-	84	86.780	ENSHCOG00000001863	RBFOX3	89	86.429	Hippocampus_comes
ENSSDUG00000015801	-	99	66.667	ENSHCOG00000007444	RBFOX3	95	66.486	Hippocampus_comes
ENSSDUG00000015801	-	98	78.841	ENSIPUG00000012010	rbfox3a	100	77.898	Ictalurus_punctatus
ENSSDUG00000015801	-	87	67.155	ENSIPUG00000021966	rbfox3b	98	77.907	Ictalurus_punctatus
ENSSDUG00000015801	-	89	58.006	ENSSTOG00000026817	RBFOX3	95	66.316	Ictidomys_tridecemlineatus
ENSSDUG00000015801	-	73	93.103	ENSJJAG00000014167	Rbfox3	96	65.706	Jaculus_jaculus
ENSSDUG00000015801	-	98	77.384	ENSKMAG00000006726	rbfox3b	100	76.567	Kryptolebias_marmoratus
ENSSDUG00000015801	-	99	77.628	ENSLBEG00000004030	rbfox3b	100	77.112	Labrus_bergylta
ENSSDUG00000015801	-	98	89.101	ENSLBEG00000022508	-	100	89.373	Labrus_bergylta
ENSSDUG00000015801	-	52	58.065	ENSLACG00000000021	-	95	58.378	Latimeria_chalumnae
ENSSDUG00000015801	-	96	65.903	ENSLACG00000018409	-	100	65.578	Latimeria_chalumnae
ENSSDUG00000015801	-	90	83.129	ENSLOCG00000012267	rbfox3a	98	83.129	Lepisosteus_oculatus
ENSSDUG00000015801	-	96	68.112	ENSLAFG00000016623	RBFOX3	98	68.112	Loxodonta_africana
ENSSDUG00000015801	-	73	93.103	ENSMFAG00000002247	RBFOX3	96	65.429	Macaca_fascicularis
ENSSDUG00000015801	-	76	93.103	ENSMMUG00000023028	RBFOX3	95	76.000	Macaca_mulatta
ENSSDUG00000015801	-	83	75.000	ENSMNEG00000041147	RBFOX3	95	75.667	Macaca_nemestrina
ENSSDUG00000015801	-	83	75.329	ENSMLEG00000025686	RBFOX3	95	76.000	Mandrillus_leucophaeus
ENSSDUG00000015801	-	96	85.591	ENSMAMG00000020600	-	99	85.345	Mastacembelus_armatus
ENSSDUG00000015801	-	87	75.649	ENSMAMG00000019810	rbfox3b	95	76.736	Mastacembelus_armatus
ENSSDUG00000015801	-	81	76.603	ENSMZEG00005003055	-	81	76.603	Maylandia_zebra
ENSSDUG00000015801	-	98	78.632	ENSMZEG00005000781	rbfox3b	100	76.567	Maylandia_zebra
ENSSDUG00000015801	-	63	79.638	ENSMGAG00000005600	RBFOX3	83	80.090	Meleagris_gallopavo
ENSSDUG00000015801	-	80	78.070	ENSMAUG00000013543	Rbfox3	96	63.401	Mesocricetus_auratus
ENSSDUG00000015801	-	78	93.333	ENSMICG00000014898	RBFOX3	96	76.254	Microcebus_murinus
ENSSDUG00000015801	-	80	78.947	ENSMOCG00000015373	Rbfox3	96	64.387	Microtus_ochrogaster
ENSSDUG00000015801	-	99	75.676	ENSMMOG00000020193	rbfox3b	100	75.068	Mola_mola
ENSSDUG00000015801	-	96	73.889	ENSMODG00000002089	RBFOX3	100	74.515	Monodelphis_domestica
ENSSDUG00000015801	-	99	87.332	ENSMALG00000018270	-	100	88.011	Monopterus_albus
ENSSDUG00000015801	-	98	76.839	ENSMALG00000020407	rbfox3b	100	76.022	Monopterus_albus
ENSSDUG00000015801	-	89	72.840	MGP_CAROLIEiJ_G0017487	Rbfox3	96	90.647	Mus_caroli
ENSSDUG00000015801	-	89	72.840	ENSMUSG00000025576	Rbfox3	96	90.647	Mus_musculus
ENSSDUG00000015801	-	73	89.655	MGP_PahariEiJ_G0018614	Rbfox3	96	91.367	Mus_pahari
ENSSDUG00000015801	-	89	73.148	MGP_SPRETEiJ_G0018331	Rbfox3	96	90.647	Mus_spretus
ENSSDUG00000015801	-	96	68.229	ENSMPUG00000012319	RBFOX3	98	68.229	Mustela_putorius_furo
ENSSDUG00000015801	-	80	80.702	ENSNGAG00000018006	Rbfox3	96	65.230	Nannospalax_galili
ENSSDUG00000015801	-	99	79.539	ENSNBRG00000010102	rbfox3b	100	79.130	Neolamprologus_brichardi
ENSSDUG00000015801	-	89	84.494	ENSNBRG00000022885	-	92	84.277	Neolamprologus_brichardi
ENSSDUG00000015801	-	83	58.983	ENSNLEG00000000153	-	81	87.097	Nomascus_leucogenys
ENSSDUG00000015801	-	75	88.889	ENSMEUG00000004218	-	76	89.583	Notamacropus_eugenii
ENSSDUG00000015801	-	76	74.093	ENSOPRG00000016279	-	79	74.093	Ochotona_princeps
ENSSDUG00000015801	-	81	81.481	ENSODEG00000009433	RBFOX3	95	75.415	Octodon_degus
ENSSDUG00000015801	-	96	78.273	ENSONIG00000009549	rbfox3b	97	77.437	Oreochromis_niloticus
ENSSDUG00000015801	-	93	80.588	ENSONIG00000007282	-	98	82.090	Oreochromis_niloticus
ENSSDUG00000015801	-	54	86.207	ENSOCUG00000014217	RBFOX3	58	76.875	Oryctolagus_cuniculus
ENSSDUG00000015801	-	98	78.090	ENSORLG00000000905	rbfox3b	79	76.087	Oryzias_latipes
ENSSDUG00000015801	-	98	78.090	ENSORLG00020018030	rbfox3b	99	76.087	Oryzias_latipes_hni
ENSSDUG00000015801	-	98	77.174	ENSORLG00015009200	rbfox3b	99	76.359	Oryzias_latipes_hsok
ENSSDUG00000015801	-	84	78.317	ENSOMEG00000014677	rbfox3b	82	78.317	Oryzias_melastigma
ENSSDUG00000015801	-	96	72.099	ENSOGAG00000029595	RBFOX3	98	71.311	Otolemur_garnettii
ENSSDUG00000015801	-	96	56.784	ENSOARG00000002908	RBFOX3	100	53.415	Ovis_aries
ENSSDUG00000015801	-	69	80.237	ENSPPAG00000025383	RBFOX3	87	80.237	Pan_paniscus
ENSSDUG00000015801	-	73	86.207	ENSPPRG00000007819	RBFOX3	96	66.372	Panthera_pardus
ENSSDUG00000015801	-	76	93.333	ENSPTRG00000009727	RBFOX3	95	76.000	Pan_troglodytes
ENSSDUG00000015801	-	83	75.329	ENSPANG00000019837	RBFOX3	95	76.000	Papio_anubis
ENSSDUG00000015801	-	98	79.891	ENSPKIG00000010299	rbfox3a	97	78.932	Paramormyrops_kingsleyae
ENSSDUG00000015801	-	97	64.162	ENSPKIG00000022633	-	97	60.870	Paramormyrops_kingsleyae
ENSSDUG00000015801	-	84	79.054	ENSPMGG00000008000	rbfox3b	92	80.068	Periophthalmus_magnuspinnatus
ENSSDUG00000015801	-	80	79.386	ENSPEMG00000010500	Rbfox3	96	64.672	Peromyscus_maniculatus_bairdii
ENSSDUG00000015801	-	56	67.606	ENSPMAG00000008689	rbfox3b	99	68.075	Petromyzon_marinus
ENSSDUG00000015801	-	96	80.208	ENSPCIG00000005766	RBFOX3	84	81.481	Phascolarctos_cinereus
ENSSDUG00000015801	-	98	77.966	ENSPFOG00000018294	rbfox3b	95	76.860	Poecilia_formosa
ENSSDUG00000015801	-	74	80.000	ENSPLAG00000000481	rbfox3b	76	82.979	Poecilia_latipinna
ENSSDUG00000015801	-	86	70.927	ENSPMEG00000022997	rbfox3b	95	70.470	Poecilia_mexicana
ENSSDUG00000015801	-	99	76.819	ENSPREG00000012886	rbfox3b	100	77.089	Poecilia_reticulata
ENSSDUG00000015801	-	96	64.928	ENSPPYG00000008704	RBFOX3	99	65.517	Pongo_abelii
ENSSDUG00000015801	-	79	79.630	ENSPCAG00000001401	RBFOX3	96	64.183	Procavia_capensis
ENSSDUG00000015801	-	78	93.333	ENSPCOG00000012689	RBFOX3	97	65.429	Propithecus_coquereli
ENSSDUG00000015801	-	73	86.207	ENSPVAG00000015243	RBFOX3	78	76.364	Pteropus_vampyrus
ENSSDUG00000015801	-	99	79.539	ENSPNYG00000010414	rbfox3b	100	79.130	Pundamilia_nyererei
ENSSDUG00000015801	-	100	87.288	ENSPNYG00000009079	-	98	87.571	Pundamilia_nyererei
ENSSDUG00000015801	-	99	78.989	ENSPNAG00000002889	rbfox3a	100	79.570	Pygocentrus_nattereri
ENSSDUG00000015801	-	88	62.821	ENSPNAG00000018173	rbfox3b	88	63.636	Pygocentrus_nattereri
ENSSDUG00000015801	-	74	87.500	ENSRNOG00000003386	Rbfox3	95	74.834	Rattus_norvegicus
ENSSDUG00000015801	-	96	73.684	ENSRBIG00000040449	RBFOX3	100	74.586	Rhinopithecus_bieti
ENSSDUG00000015801	-	83	75.329	ENSRROG00000000766	RBFOX3	95	76.000	Rhinopithecus_roxellana
ENSSDUG00000015801	-	73	93.103	ENSSBOG00000031591	RBFOX3	95	75.168	Saimiri_boliviensis_boliviensis
ENSSDUG00000015801	-	96	65.920	ENSSHAG00000016076	RBFOX3	100	65.672	Sarcophilus_harrisii
ENSSDUG00000015801	-	98	80.435	ENSSFOG00015023260	rbfox3a	97	81.044	Scleropages_formosus
ENSSDUG00000015801	-	96	63.158	ENSSFOG00015004716	RBFOX3	100	64.187	Scleropages_formosus
ENSSDUG00000015801	-	98	73.333	ENSSMAG00000012618	rbfox3b	85	73.936	Scophthalmus_maximus
ENSSDUG00000015801	-	98	87.466	ENSSMAG00000019052	-	100	87.738	Scophthalmus_maximus
ENSSDUG00000015801	-	100	96.667	ENSSLDG00000016098	-	100	96.667	Seriola_lalandi_dorsalis
ENSSDUG00000015801	-	98	77.929	ENSSLDG00000000149	rbfox3b	100	77.112	Seriola_lalandi_dorsalis
ENSSDUG00000015801	-	96	66.201	ENSSPUG00000011733	RBFOX3	95	78.333	Sphenodon_punctatus
ENSSDUG00000015801	-	99	76.404	ENSSPAG00000017571	rbfox3b	100	75.562	Stegastes_partitus
ENSSDUG00000015801	-	69	83.133	ENSSPAG00000004898	-	84	75.801	Stegastes_partitus
ENSSDUG00000015801	-	66	90.625	ENSSSCG00000039498	RBFOX3	100	65.192	Sus_scrofa
ENSSDUG00000015801	-	96	77.101	ENSTRUG00000004894	rbfox3b	98	74.722	Takifugu_rubripes
ENSSDUG00000015801	-	97	68.250	ENSTNIG00000011278	rbfox3b	99	68.500	Tetraodon_nigroviridis
ENSSDUG00000015801	-	73	93.103	ENSTTRG00000003676	RBFOX3	77	81.481	Tursiops_truncatus
ENSSDUG00000015801	-	83	75.987	ENSUAMG00000004668	RBFOX3	95	76.094	Ursus_americanus
ENSSDUG00000015801	-	90	93.103	ENSVVUG00000017864	RBFOX3	95	75.758	Vulpes_vulpes
ENSSDUG00000015801	-	96	58.929	ENSXETG00000020236	rbfox3	98	59.184	Xenopus_tropicalis
ENSSDUG00000015801	-	96	77.716	ENSXCOG00000018262	rbfox3b	99	76.880	Xiphophorus_couchianus
ENSSDUG00000015801	-	99	77.898	ENSXMAG00000012939	rbfox3b	97	77.437	Xiphophorus_maculatus