EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000016097 (Gene tree)
Gene ID: 111220522
Gene Symbol: srsf6a
Alias: fa12h12|sfrs6a|wu:fa12h12|wu:fa13e06|zgc:63770
Full Name: serine/arginine-rich splicing factor 6-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 3621 bases
Position: chrBDQW01000070.1:441419-445039
Accession: 111220522
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000022127	RRM_1	PF00076.22	4.6e-32	1	2
ENSSDUP00000022127	RRM_1	PF00076.22	4.6e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000022534	-	1050	XM_022743600	ENSSDUP00000022127	349 (aa)	XP_022599321	-

Gene Model

Click here to download ENSSDUG00000016097's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03040	Spliceosome	KEGG
sdu05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000016097's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000016097	srsf6a	52	63.536	ENSSDUG00000006103	srsf5a	62	64.641
ENSSDUG00000016097	srsf6a	52	63.889	ENSSDUG00000005766	srsf5b	63	63.889
ENSSDUG00000016097	srsf6a	53	74.595	ENSSDUG00000007387	srsf4	54	74.468
ENSSDUG00000016097	srsf6a	57	36.538	ENSSDUG00000003887	-	79	40.654
ENSSDUG00000016097	srsf6a	52	41.753	ENSSDUG00000018908	srsf9	73	40.933

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000016097	srsf6a	53	87.634	ENSG00000124193	SRSF6	98	61.151	Homo_sapiens
ENSSDUG00000016097	srsf6a	53	70.588	ENSAMEG00000003710	SRSF6	53	71.505	Ailuropoda_melanoleuca
ENSSDUG00000016097	srsf6a	71	76.800	ENSACIG00000020091	-	95	83.721	Amphilophus_citrinellus
ENSSDUG00000016097	srsf6a	93	80.805	ENSACIG00000023658	-	87	95.028	Amphilophus_citrinellus
ENSSDUG00000016097	srsf6a	79	70.036	ENSAOCG00000004309	-	57	87.027	Amphiprion_ocellaris
ENSSDUG00000016097	srsf6a	94	85.321	ENSAPEG00000013086	-	53	98.378	Amphiprion_percula
ENSSDUG00000016097	srsf6a	55	82.653	ENSAPEG00000020746	-	65	83.158	Amphiprion_percula
ENSSDUG00000016097	srsf6a	53	85.326	ENSATEG00000007255	-	71	82.065	Anabas_testudineus
ENSSDUG00000016097	srsf6a	53	88.108	ENSACAG00000002061	SRSF6	52	88.108	Anolis_carolinensis
ENSSDUG00000016097	srsf6a	53	87.634	ENSANAG00000024080	SRSF6	98	61.151	Aotus_nancymaae
ENSSDUG00000016097	srsf6a	53	90.323	ENSAMXG00000003101	-	91	68.786	Astyanax_mexicanus
ENSSDUG00000016097	srsf6a	53	86.022	ENSAMXG00000042692	-	96	88.889	Astyanax_mexicanus
ENSSDUG00000016097	srsf6a	53	87.634	ENSBTAG00000008527	SRSF6	98	61.871	Bos_taurus
ENSSDUG00000016097	srsf6a	53	87.634	ENSCJAG00000048403	SRSF6	98	61.151	Callithrix_jacchus
ENSSDUG00000016097	srsf6a	53	87.634	ENSCAFG00000009289	SRSF6	98	61.871	Canis_familiaris
ENSSDUG00000016097	srsf6a	53	87.634	ENSCAFG00020013559	SRSF6	98	61.871	Canis_lupus_dingo
ENSSDUG00000016097	srsf6a	53	87.634	ENSCHIG00000015890	-	98	61.871	Capra_hircus
ENSSDUG00000016097	srsf6a	53	86.559	ENSCHIG00000009148	-	53	87.027	Capra_hircus
ENSSDUG00000016097	srsf6a	53	82.258	ENSCPOG00000011761	SRSF6	98	61.151	Cavia_porcellus
ENSSDUG00000016097	srsf6a	53	87.634	ENSCCAG00000026018	-	98	61.151	Cebus_capucinus
ENSSDUG00000016097	srsf6a	53	76.471	ENSCCAG00000018540	-	60	76.344	Cebus_capucinus
ENSSDUG00000016097	srsf6a	53	87.634	ENSCATG00000030794	SRSF6	98	61.151	Cercocebus_atys
ENSSDUG00000016097	srsf6a	53	87.634	ENSCLAG00000010247	SRSF6	98	61.151	Chinchilla_lanigera
ENSSDUG00000016097	srsf6a	53	87.634	ENSCSAG00000014022	SRSF6	53	88.108	Chlorocebus_sabaeus
ENSSDUG00000016097	srsf6a	53	86.559	ENSCANG00000037774	-	53	87.027	Colobus_angolensis_palliatus
ENSSDUG00000016097	srsf6a	53	87.634	ENSCGRG00001022339	Srsf6	98	61.151	Cricetulus_griseus_chok1gshd
ENSSDUG00000016097	srsf6a	53	89.305	ENSDARG00000016783	srsf6b	82	96.154	Danio_rerio
ENSSDUG00000016097	srsf6a	53	87.634	ENSDNOG00000008410	SRSF6	53	88.108	Dasypus_novemcinctus
ENSSDUG00000016097	srsf6a	53	87.634	ENSDORG00000028378	Srsf6	98	61.151	Dipodomys_ordii
ENSSDUG00000016097	srsf6a	53	83.871	ENSETEG00000006221	SRSF6	87	66.561	Echinops_telfairi
ENSSDUG00000016097	srsf6a	53	87.634	ENSEASG00005023429	SRSF6	53	88.108	Equus_asinus_asinus
ENSSDUG00000016097	srsf6a	53	87.634	ENSECAG00000023932	SRSF6	56	88.108	Equus_caballus
ENSSDUG00000016097	srsf6a	94	67.477	ENSELUG00000024182	SRSF6	90	87.805	Esox_lucius
ENSSDUG00000016097	srsf6a	100	74.785	ENSELUG00000013506	SRSF6	89	89.674	Esox_lucius
ENSSDUG00000016097	srsf6a	53	87.634	ENSFCAG00000032814	SRSF6	53	88.108	Felis_catus
ENSSDUG00000016097	srsf6a	94	80.909	ENSFHEG00000023065	srsf6a	54	95.135	Fundulus_heteroclitus
ENSSDUG00000016097	srsf6a	52	74.586	ENSGMOG00000006105	srsf6a	62	73.481	Gadus_morhua
ENSSDUG00000016097	srsf6a	52	85.792	ENSGMOG00000014458	srsf6a	51	84.211	Gadus_morhua
ENSSDUG00000016097	srsf6a	53	87.701	ENSGALG00000000990	SRSF6	98	59.441	Gallus_gallus
ENSSDUG00000016097	srsf6a	93	76.149	ENSGACG00000006084	srsf6a	63	88.649	Gasterosteus_aculeatus
ENSSDUG00000016097	srsf6a	53	87.634	ENSGGOG00000009808	SRSF6	98	61.151	Gorilla_gorilla
ENSSDUG00000016097	srsf6a	100	63.636	ENSHBUG00000006386	-	57	86.486	Haplochromis_burtoni
ENSSDUG00000016097	srsf6a	55	68.718	ENSHGLG00000007701	-	57	67.568	Heterocephalus_glaber_female
ENSSDUG00000016097	srsf6a	53	87.634	ENSHGLG00000007348	SRSF6	98	61.151	Heterocephalus_glaber_female
ENSSDUG00000016097	srsf6a	91	68.025	ENSHCOG00000002740	srsf6a	57	87.027	Hippocampus_comes
ENSSDUG00000016097	srsf6a	53	87.634	ENSSTOG00000010866	SRSF6	98	61.151	Ictidomys_tridecemlineatus
ENSSDUG00000016097	srsf6a	94	69.419	ENSKMAG00000011934	srsf6a	59	89.189	Kryptolebias_marmoratus
ENSSDUG00000016097	srsf6a	92	80.896	ENSLBEG00000007356	srsf6a	95	77.126	Labrus_bergylta
ENSSDUG00000016097	srsf6a	91	72.100	ENSLACG00000005466	SRSF6	54	88.108	Latimeria_chalumnae
ENSSDUG00000016097	srsf6a	53	87.634	ENSMFAG00000036925	SRSF6	98	61.151	Macaca_fascicularis
ENSSDUG00000016097	srsf6a	53	87.634	ENSMMUG00000006742	SRSF6	98	61.151	Macaca_mulatta
ENSSDUG00000016097	srsf6a	53	87.097	ENSMNEG00000038270	-	53	87.568	Macaca_nemestrina
ENSSDUG00000016097	srsf6a	53	87.097	ENSMNEG00000027392	-	98	61.151	Macaca_nemestrina
ENSSDUG00000016097	srsf6a	100	96.562	ENSMAMG00000017161	srsf6a	100	96.562	Mastacembelus_armatus
ENSSDUG00000016097	srsf6a	62	76.744	ENSMZEG00005020658	-	60	86.885	Maylandia_zebra
ENSSDUG00000016097	srsf6a	100	64.756	ENSMZEG00005008032	-	57	86.486	Maylandia_zebra
ENSSDUG00000016097	srsf6a	53	87.097	ENSMICG00000008537	SRSF6	98	61.151	Microcebus_murinus
ENSSDUG00000016097	srsf6a	53	86.559	ENSMODG00000003107	SRSF6	54	88.108	Monodelphis_domestica
ENSSDUG00000016097	srsf6a	84	86.905	ENSMALG00000003702	srsf6a	100	73.485	Monopterus_albus
ENSSDUG00000016097	srsf6a	53	87.634	MGP_CAROLIEiJ_G0024606	Srsf6	98	61.151	Mus_caroli
ENSSDUG00000016097	srsf6a	53	87.634	ENSMUSG00000016921	Srsf6	98	61.151	Mus_musculus
ENSSDUG00000016097	srsf6a	53	87.634	MGP_PahariEiJ_G0026050	Srsf6	98	61.151	Mus_pahari
ENSSDUG00000016097	srsf6a	53	87.634	MGP_SPRETEiJ_G0025528	Srsf6	98	61.151	Mus_spretus
ENSSDUG00000016097	srsf6a	63	78.182	ENSMPUG00000017692	SRSF6	64	88.108	Mustela_putorius_furo
ENSSDUG00000016097	srsf6a	53	59.155	ENSMLUG00000016618	SRSF6	53	57.820	Myotis_lucifugus
ENSSDUG00000016097	srsf6a	53	87.634	ENSNGAG00000017560	Srsf6	98	61.151	Nannospalax_galili
ENSSDUG00000016097	srsf6a	52	98.907	ENSNBRG00000001846	-	91	85.627	Neolamprologus_brichardi
ENSSDUG00000016097	srsf6a	100	63.897	ENSNBRG00000014709	-	57	86.486	Neolamprologus_brichardi
ENSSDUG00000016097	srsf6a	53	87.634	ENSNLEG00000006524	SRSF6	98	61.151	Nomascus_leucogenys
ENSSDUG00000016097	srsf6a	53	85.946	ENSONIG00000020247	-	53	85.946	Oreochromis_niloticus
ENSSDUG00000016097	srsf6a	52	52.486	ENSOCUG00000023999	-	70	52.486	Oryctolagus_cuniculus
ENSSDUG00000016097	srsf6a	64	61.441	ENSOCUG00000009785	-	63	68.750	Oryctolagus_cuniculus
ENSSDUG00000016097	srsf6a	53	74.731	ENSOMEG00000006001	srsf6a	66	75.135	Oryzias_melastigma
ENSSDUG00000016097	srsf6a	53	87.097	ENSOGAG00000014468	SRSF6	53	87.568	Otolemur_garnettii
ENSSDUG00000016097	srsf6a	53	80.729	ENSOARG00000003117	SRSF6	53	84.324	Ovis_aries
ENSSDUG00000016097	srsf6a	68	62.869	ENSPPAG00000043131	-	57	72.487	Pan_paniscus
ENSSDUG00000016097	srsf6a	53	87.097	ENSPPAG00000034327	-	53	87.568	Pan_paniscus
ENSSDUG00000016097	srsf6a	53	87.634	ENSPPRG00000008917	SRSF6	53	88.108	Panthera_pardus
ENSSDUG00000016097	srsf6a	68	62.869	ENSPTRG00000046274	-	57	72.487	Pan_troglodytes
ENSSDUG00000016097	srsf6a	53	87.634	ENSPTRG00000044686	-	98	61.151	Pan_troglodytes
ENSSDUG00000016097	srsf6a	53	87.634	ENSPANG00000035224	SRSF6	98	61.151	Papio_anubis
ENSSDUG00000016097	srsf6a	52	73.370	ENSPKIG00000015703	-	95	60.927	Paramormyrops_kingsleyae
ENSSDUG00000016097	srsf6a	94	77.328	ENSPKIG00000018463	-	77	94.872	Paramormyrops_kingsleyae
ENSSDUG00000016097	srsf6a	94	78.899	ENSPMGG00000014963	srsf6a	92	72.934	Periophthalmus_magnuspinnatus
ENSSDUG00000016097	srsf6a	53	86.559	ENSPCIG00000003820	SRSF6	98	61.151	Phascolarctos_cinereus
ENSSDUG00000016097	srsf6a	92	94.828	ENSPFOG00000006437	srsf6a	90	82.051	Poecilia_formosa
ENSSDUG00000016097	srsf6a	94	82.440	ENSPLAG00000009243	srsf6a	79	96.032	Poecilia_latipinna
ENSSDUG00000016097	srsf6a	94	82.282	ENSPMEG00000006042	SRSF6	53	96.757	Poecilia_mexicana
ENSSDUG00000016097	srsf6a	53	87.634	ENSPPYG00000011019	SRSF6	53	88.108	Pongo_abelii
ENSSDUG00000016097	srsf6a	53	86.022	ENSPCAG00000010954	SRSF6	55	86.486	Procavia_capensis
ENSSDUG00000016097	srsf6a	53	87.097	ENSPCOG00000026364	SRSF6	98	61.151	Propithecus_coquereli
ENSSDUG00000016097	srsf6a	53	87.097	ENSPVAG00000015232	SRSF6	53	88.043	Pteropus_vampyrus
ENSSDUG00000016097	srsf6a	100	64.183	ENSPNYG00000004944	-	57	86.486	Pundamilia_nyererei
ENSSDUG00000016097	srsf6a	52	98.907	ENSPNYG00000011272	-	90	89.297	Pundamilia_nyererei
ENSSDUG00000016097	srsf6a	53	87.634	ENSRNOG00000006380	Srsf6	54	88.108	Rattus_norvegicus
ENSSDUG00000016097	srsf6a	53	86.559	ENSRBIG00000041414	SRSF6	98	60.432	Rhinopithecus_bieti
ENSSDUG00000016097	srsf6a	53	87.634	ENSRROG00000029989	SRSF6	98	61.151	Rhinopithecus_roxellana
ENSSDUG00000016097	srsf6a	53	87.634	ENSSBOG00000033708	-	98	61.151	Saimiri_boliviensis_boliviensis
ENSSDUG00000016097	srsf6a	52	71.739	ENSSBOG00000034078	-	54	69.945	Saimiri_boliviensis_boliviensis
ENSSDUG00000016097	srsf6a	53	86.559	ENSSHAG00000012805	SRSF6	54	88.108	Sarcophilus_harrisii
ENSSDUG00000016097	srsf6a	94	71.387	ENSSFOG00015019681	-	93	63.073	Scleropages_formosus
ENSSDUG00000016097	srsf6a	93	71.296	ENSSFOG00015015169	SRSF6	59	92.973	Scleropages_formosus
ENSSDUG00000016097	srsf6a	68	76.667	ENSSMAG00000017447	-	55	82.609	Scophthalmus_maximus
ENSSDUG00000016097	srsf6a	100	98.854	ENSSLDG00000022841	srsf6a	100	98.854	Seriola_lalandi_dorsalis
ENSSDUG00000016097	srsf6a	53	89.189	ENSSPUG00000004967	SRSF6	98	59.441	Sphenodon_punctatus
ENSSDUG00000016097	srsf6a	91	92.593	ENSSPAG00000002362	srsf6a	88	97.872	Stegastes_partitus
ENSSDUG00000016097	srsf6a	53	87.634	ENSSSCG00000007362	SRSF6	61	88.108	Sus_scrofa
ENSSDUG00000016097	srsf6a	53	88.108	ENSTGUG00000003455	SRSF6	53	88.649	Taeniopygia_guttata
ENSSDUG00000016097	srsf6a	93	76.780	ENSTNIG00000001692	srsf6a	56	94.595	Tetraodon_nigroviridis
ENSSDUG00000016097	srsf6a	53	87.634	ENSUAMG00000003559	SRSF6	98	61.871	Ursus_americanus
ENSSDUG00000016097	srsf6a	94	79.880	ENSXMAG00000021849	srsf6a	55	94.595	Xiphophorus_maculatus