EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000016140 (Gene tree)
Gene ID: 111224031
Gene Symbol: rpl29
Alias: zgc:92868
Full Name: ribosomal protein L29
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 3971 bases
Position: chrBDQW01000121.1:1413696-1417666
Accession: 111224031
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000022177	Ribosomal_L29e	PF01779.17	1.7e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000022583	-	958	XM_022748395	ENSSDUP00000022177	64 (aa)	XP_022604116	UPI000BBE50BE

Gene Model

Click here to download ENSSDUG00000016140's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03010	Ribosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000016140's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000016140	rpl29	72	65.957	ENSSDUG00000020458	-	76	65.957

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000016140	rpl29	72	95.652	ENSG00000162244	RPL29	97	88.889	Homo_sapiens
ENSSDUG00000016140	rpl29	83	92.453	ENSAPOG00000002586	rpl29	78	94.000	Acanthochromis_polyacanthus
ENSSDUG00000016140	rpl29	83	94.340	ENSACIG00000018340	rpl29	78	94.000	Amphilophus_citrinellus
ENSSDUG00000016140	rpl29	83	96.226	ENSAOCG00000016652	rpl29	78	98.000	Amphiprion_ocellaris
ENSSDUG00000016140	rpl29	83	96.226	ENSAPEG00000005754	rpl29	78	98.000	Amphiprion_percula
ENSSDUG00000016140	rpl29	72	93.478	ENSACAG00000006888	RPL29	77	94.000	Anolis_carolinensis
ENSSDUG00000016140	rpl29	72	95.652	ENSANAG00000024147	-	77	78.261	Aotus_nancymaae
ENSSDUG00000016140	rpl29	100	90.625	ENSACLG00000017820	rpl29	78	96.000	Astatotilapia_calliptera
ENSSDUG00000016140	rpl29	92	86.441	ENSAMXG00000038794	rpl29	78	92.000	Astyanax_mexicanus
ENSSDUG00000016140	rpl29	81	63.462	WBGene00004443	rpl-29	81	64.000	Caenorhabditis_elegans
ENSSDUG00000016140	rpl29	72	95.652	ENSCJAG00000042339	-	77	78.261	Callithrix_jacchus
ENSSDUG00000016140	rpl29	72	95.652	ENSCCAG00000027980	-	58	94.286	Cebus_capucinus
ENSSDUG00000016140	rpl29	81	75.000	ENSCING00000018496	-	86	76.000	Ciona_intestinalis
ENSSDUG00000016140	rpl29	81	76.923	ENSCSAVG00000005231	-	85	78.000	Ciona_savignyi
ENSSDUG00000016140	rpl29	72	95.652	ENSCGRG00001016452	-	74	96.000	Cricetulus_griseus_chok1gshd
ENSSDUG00000016140	rpl29	95	96.721	ENSCSEG00000010267	rpl29	92	96.721	Cynoglossus_semilaevis
ENSSDUG00000016140	rpl29	78	96.000	ENSCVAG00000023098	rpl29	78	96.000	Cyprinodon_variegatus
ENSSDUG00000016140	rpl29	88	92.857	ENSDARG00000077717	rpl29	78	96.000	Danio_rerio
ENSSDUG00000016140	rpl29	78	66.000	FBgn0016726	RpL29	66	66.000	Drosophila_melanogaster
ENSSDUG00000016140	rpl29	67	86.047	ENSEASG00005005507	-	66	86.047	Equus_asinus_asinus
ENSSDUG00000016140	rpl29	97	83.871	ENSELUG00000015592	RL29	71	88.000	Esox_lucius
ENSSDUG00000016140	rpl29	67	69.767	ENSFCAG00000035470	-	58	68.182	Felis_catus
ENSSDUG00000016140	rpl29	91	67.241	ENSFCAG00000043006	-	62	70.000	Felis_catus
ENSSDUG00000016140	rpl29	72	91.304	ENSFALG00000008925	RPL29	74	92.000	Ficedula_albicollis
ENSSDUG00000016140	rpl29	100	90.625	ENSFHEG00000015425	rpl29	78	96.000	Fundulus_heteroclitus
ENSSDUG00000016140	rpl29	83	88.679	ENSGMOG00000003626	rpl29	66	88.000	Gadus_morhua
ENSSDUG00000016140	rpl29	72	93.478	ENSGALG00000026978	RPL29	70	94.000	Gallus_gallus
ENSSDUG00000016140	rpl29	100	89.062	ENSGAFG00000012868	rpl29	78	94.000	Gambusia_affinis
ENSSDUG00000016140	rpl29	97	87.097	ENSGACG00000007041	rpl29	65	94.000	Gasterosteus_aculeatus
ENSSDUG00000016140	rpl29	72	75.000	ENSGAGG00000024203	-	89	75.000	Gopherus_agassizii
ENSSDUG00000016140	rpl29	72	95.652	ENSGGOG00000024691	RPL29	62	89.189	Gorilla_gorilla
ENSSDUG00000016140	rpl29	100	90.625	ENSHBUG00000010519	rpl29	78	96.000	Haplochromis_burtoni
ENSSDUG00000016140	rpl29	78	96.000	ENSHCOG00000000478	rpl29	64	96.000	Hippocampus_comes
ENSSDUG00000016140	rpl29	97	84.375	ENSIPUG00000001196	rpl29	78	94.000	Ictalurus_punctatus
ENSSDUG00000016140	rpl29	83	96.226	ENSKMAG00000011291	rpl29	78	96.000	Kryptolebias_marmoratus
ENSSDUG00000016140	rpl29	83	98.113	ENSLBEG00000016213	rpl29	74	98.000	Labrus_bergylta
ENSSDUG00000016140	rpl29	97	83.871	ENSLACG00000018622	rpl29	78	90.000	Latimeria_chalumnae
ENSSDUG00000016140	rpl29	88	89.286	ENSLACG00000018031	-	74	90.000	Latimeria_chalumnae
ENSSDUG00000016140	rpl29	97	85.484	ENSLOCG00000013798	rpl29	77	92.000	Lepisosteus_oculatus
ENSSDUG00000016140	rpl29	83	96.226	ENSMAMG00000014274	rpl29	53	96.000	Mastacembelus_armatus
ENSSDUG00000016140	rpl29	100	90.625	ENSMZEG00005013519	rpl29	78	96.000	Maylandia_zebra
ENSSDUG00000016140	rpl29	72	93.478	ENSMGAG00000001213	RPL29	70	94.000	Meleagris_gallopavo
ENSSDUG00000016140	rpl29	77	81.633	ENSMICG00000049466	-	74	81.633	Microcebus_murinus
ENSSDUG00000016140	rpl29	100	90.625	ENSMMOG00000010430	rpl29	78	94.000	Mola_mola
ENSSDUG00000016140	rpl29	84	96.296	ENSMALG00000009023	rpl29	64	98.000	Monopterus_albus
ENSSDUG00000016140	rpl29	72	95.652	ENSMUSG00000048758	Rpl29	74	96.000	Mus_musculus
ENSSDUG00000016140	rpl29	100	90.625	ENSNBRG00000022109	rpl29	78	96.000	Neolamprologus_brichardi
ENSSDUG00000016140	rpl29	98	90.476	ENSONIG00000014377	rpl29	79	96.000	Oreochromis_niloticus
ENSSDUG00000016140	rpl29	100	95.312	ENSORLG00000023610	rpl29	53	98.000	Oryzias_latipes
ENSSDUG00000016140	rpl29	100	95.312	ENSORLG00020018665	rpl29	53	98.000	Oryzias_latipes_hni
ENSSDUG00000016140	rpl29	100	95.312	ENSORLG00015014455	rpl29	53	98.000	Oryzias_latipes_hsok
ENSSDUG00000016140	rpl29	100	95.312	ENSOMEG00000019919	rpl29	78	98.000	Oryzias_melastigma
ENSSDUG00000016140	rpl29	56	91.667	ENSPPAG00000037142	-	61	91.667	Pan_paniscus
ENSSDUG00000016140	rpl29	92	71.186	ENSPPRG00000011689	-	75	75.510	Panthera_pardus
ENSSDUG00000016140	rpl29	92	69.492	ENSPTIG00000011913	-	61	72.000	Panthera_tigris_altaica
ENSSDUG00000016140	rpl29	72	95.652	ENSPTRG00000043237	RPL29	63	89.189	Pan_troglodytes
ENSSDUG00000016140	rpl29	72	93.478	ENSPKIG00000025048	rpl29	76	94.000	Paramormyrops_kingsleyae
ENSSDUG00000016140	rpl29	72	95.652	ENSPSIG00000014699	RPL29	79	96.000	Pelodiscus_sinensis
ENSSDUG00000016140	rpl29	94	88.333	ENSPMGG00000005361	rpl29	74	92.000	Periophthalmus_magnuspinnatus
ENSSDUG00000016140	rpl29	95	91.803	ENSPFOG00000011385	rpl29	82	94.000	Poecilia_formosa
ENSSDUG00000016140	rpl29	78	92.000	ENSPLAG00000012042	rpl29	78	92.000	Poecilia_latipinna
ENSSDUG00000016140	rpl29	78	94.000	ENSPMEG00000018297	rpl29	78	94.000	Poecilia_mexicana
ENSSDUG00000016140	rpl29	78	94.000	ENSPREG00000007066	rpl29	78	94.000	Poecilia_reticulata
ENSSDUG00000016140	rpl29	100	90.625	ENSPNYG00000019481	rpl29	78	96.000	Pundamilia_nyererei
ENSSDUG00000016140	rpl29	92	89.831	ENSPNAG00000007550	rpl29	78	96.000	Pygocentrus_nattereri
ENSSDUG00000016140	rpl29	81	86.538	ENSRNOG00000025794	AABR07021239.1	67	86.000	Rattus_norvegicus
ENSSDUG00000016140	rpl29	72	76.087	YFR032C-A	RPL29	78	76.087	Saccharomyces_cerevisiae
ENSSDUG00000016140	rpl29	83	96.226	ENSSMAG00000013571	rpl29	78	98.000	Scophthalmus_maximus
ENSSDUG00000016140	rpl29	100	100.000	ENSSLDG00000003932	rpl29	100	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000016140	rpl29	72	93.478	ENSSPUG00000003760	RPL29	79	94.000	Sphenodon_punctatus
ENSSDUG00000016140	rpl29	83	90.566	ENSSPAG00000020292	rpl29	78	92.000	Stegastes_partitus
ENSSDUG00000016140	rpl29	84	68.519	ENSSSCG00000031314	-	75	70.833	Sus_scrofa
ENSSDUG00000016140	rpl29	61	89.744	ENSSSCG00000037047	-	86	90.476	Sus_scrofa
ENSSDUG00000016140	rpl29	72	91.304	ENSTGUG00000006027	RPL29	79	92.000	Taeniopygia_guttata
ENSSDUG00000016140	rpl29	98	87.302	ENSTRUG00000022273	rpl29	77	90.000	Takifugu_rubripes
ENSSDUG00000016140	rpl29	84	92.593	ENSTNIG00000014816	rpl29	74	92.000	Tetraodon_nigroviridis
ENSSDUG00000016140	rpl29	100	75.000	ENSTBEG00000000807	-	60	84.000	Tupaia_belangeri
ENSSDUG00000016140	rpl29	83	82.456	ENSUAMG00000002601	-	84	91.667	Ursus_americanus
ENSSDUG00000016140	rpl29	72	91.304	ENSVVUG00000012400	-	88	92.000	Vulpes_vulpes
ENSSDUG00000016140	rpl29	72	95.652	ENSXETG00000010811	rpl29	67	96.000	Xenopus_tropicalis
ENSSDUG00000016140	rpl29	100	87.500	ENSXCOG00000013543	rpl29	78	94.000	Xiphophorus_couchianus
ENSSDUG00000016140	rpl29	100	89.062	ENSXMAG00000020948	rpl29	78	94.000	Xiphophorus_maculatus