EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000016142 (Gene tree)
Gene ID: 111217295
Gene Symbol: prpf6
Alias: c20orf14|fc12b02|wu:fa05f07|wu:fc12b02|zgc:65913
Full Name: pre-mRNA processing factor 6
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 11320 bases
Position: chrBDQW01000043.1:3463145-3474464
Accession: 111217295
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000022230	PRP1_N	PF06424.12	1.8e-57	1	1
ENSSDUP00000022277	PRP1_N	PF06424.12	1.9e-57	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000022636	-	3007	XM_022739085	ENSSDUP00000022230	969 (aa)	XP_022594806	UPI000BBE5012
ENSSDUT00000022685	-	2937	-	ENSSDUP00000022277	978 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000016142's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000016142's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000016142	prpf6	96	92.349	ENSG00000101161	PRPF6	100	91.923	Homo_sapiens
ENSSDUG00000016142	prpf6	100	98.865	ENSAPOG00000010395	prpf6	100	98.865	Acanthochromis_polyacanthus
ENSSDUG00000016142	prpf6	96	91.720	ENSAMEG00000001916	PRPF6	99	91.295	Ailuropoda_melanoleuca
ENSSDUG00000016142	prpf6	100	98.039	ENSACIG00000019862	prpf6	100	98.039	Amphilophus_citrinellus
ENSSDUG00000016142	prpf6	100	98.968	ENSAOCG00000012988	prpf6	100	98.968	Amphiprion_ocellaris
ENSSDUG00000016142	prpf6	96	92.366	ENSAPEG00000008301	prpf6	100	92.581	Amphiprion_percula
ENSSDUG00000016142	prpf6	100	98.246	ENSATEG00000005581	prpf6	100	98.246	Anabas_testudineus
ENSSDUG00000016142	prpf6	96	92.561	ENSACAG00000006464	PRPF6	95	92.136	Anolis_carolinensis
ENSSDUG00000016142	prpf6	96	92.561	ENSANAG00000012661	PRPF6	100	92.933	Aotus_nancymaae
ENSSDUG00000016142	prpf6	100	98.039	ENSACLG00000025875	prpf6	100	98.039	Astatotilapia_calliptera
ENSSDUG00000016142	prpf6	97	94.597	ENSAMXG00000001929	prpf6	100	92.725	Astyanax_mexicanus
ENSSDUG00000016142	prpf6	96	92.667	ENSBTAG00000011656	PRPF6	100	92.242	Bos_taurus
ENSSDUG00000016142	prpf6	96	92.561	ENSCJAG00000010616	PRPF6	100	92.136	Callithrix_jacchus
ENSSDUG00000016142	prpf6	96	92.774	ENSCAFG00000013165	PRPF6	100	92.349	Canis_familiaris
ENSSDUG00000016142	prpf6	96	92.774	ENSCAFG00020002050	PRPF6	100	92.349	Canis_lupus_dingo
ENSSDUG00000016142	prpf6	96	92.667	ENSCHIG00000018187	PRPF6	100	92.242	Capra_hircus
ENSSDUG00000016142	prpf6	96	92.774	ENSTSYG00000007814	PRPF6	100	92.349	Carlito_syrichta
ENSSDUG00000016142	prpf6	93	91.930	ENSCAPG00000015077	PRPF6	100	91.058	Cavia_aperea
ENSSDUG00000016142	prpf6	96	93.199	ENSCPOG00000007518	PRPF6	100	92.774	Cavia_porcellus
ENSSDUG00000016142	prpf6	96	89.479	ENSCCAG00000024564	PRPF6	100	89.054	Cebus_capucinus
ENSSDUG00000016142	prpf6	96	92.455	ENSCATG00000037473	PRPF6	100	92.030	Cercocebus_atys
ENSSDUG00000016142	prpf6	96	89.479	ENSCLAG00000003854	PRPF6	100	89.054	Chinchilla_lanigera
ENSSDUG00000016142	prpf6	96	87.645	ENSCSAG00000016742	PRPF6	100	87.223	Chlorocebus_sabaeus
ENSSDUG00000016142	prpf6	81	77.886	ENSCHOG00000003315	-	98	77.686	Choloepus_hoffmanni
ENSSDUG00000016142	prpf6	98	91.571	ENSCPBG00000013964	PRPF6	96	92.660	Chrysemys_picta_bellii
ENSSDUG00000016142	prpf6	96	72.727	ENSCING00000008817	-	99	72.304	Ciona_intestinalis
ENSSDUG00000016142	prpf6	96	92.242	ENSCANG00000038230	PRPF6	100	91.817	Colobus_angolensis_palliatus
ENSSDUG00000016142	prpf6	96	93.199	ENSCGRG00001022666	Prpf6	100	92.774	Cricetulus_griseus_chok1gshd
ENSSDUG00000016142	prpf6	96	92.688	ENSCSEG00000018561	prpf6	100	92.688	Cynoglossus_semilaevis
ENSSDUG00000016142	prpf6	100	96.801	ENSCVAG00000010550	prpf6	100	96.801	Cyprinodon_variegatus
ENSSDUG00000016142	prpf6	100	92.828	ENSDARG00000091367	prpf6	100	94.386	Danio_rerio
ENSSDUG00000016142	prpf6	96	92.349	ENSDNOG00000040544	PRPF6	100	92.030	Dasypus_novemcinctus
ENSSDUG00000016142	prpf6	87	92.640	ENSDORG00000005406	Prpf6	100	92.640	Dipodomys_ordii
ENSSDUG00000016142	prpf6	96	71.505	FBgn0036828	CG6841	99	71.613	Drosophila_melanogaster
ENSSDUG00000016142	prpf6	83	91.520	ENSETEG00000004447	PRPF6	85	91.520	Echinops_telfairi
ENSSDUG00000016142	prpf6	96	86.032	ENSEBUG00000008835	prpf6	100	85.608	Eptatretus_burgeri
ENSSDUG00000016142	prpf6	98	91.736	ENSEASG00005023115	PRPF6	100	92.455	Equus_asinus_asinus
ENSSDUG00000016142	prpf6	96	88.629	ENSECAG00000013983	PRPF6	100	88.204	Equus_caballus
ENSSDUG00000016142	prpf6	86	95.833	ENSEEUG00000000180	PRPF6	81	95.833	Erinaceus_europaeus
ENSSDUG00000016142	prpf6	97	95.334	ENSELUG00000001945	prpf6	94	95.334	Esox_lucius
ENSSDUG00000016142	prpf6	96	92.774	ENSFCAG00000001183	PRPF6	100	92.349	Felis_catus
ENSSDUG00000016142	prpf6	96	92.593	ENSFALG00000010326	-	98	92.275	Ficedula_albicollis
ENSSDUG00000016142	prpf6	96	86.383	ENSFALG00000006046	-	97	86.660	Ficedula_albicollis
ENSSDUG00000016142	prpf6	96	91.711	ENSFDAG00000006451	PRPF6	100	92.404	Fukomys_damarensis
ENSSDUG00000016142	prpf6	99	97.001	ENSFHEG00000000560	prpf6	99	97.001	Fundulus_heteroclitus
ENSSDUG00000016142	prpf6	97	94.380	ENSGMOG00000015622	prpf6	99	93.849	Gadus_morhua
ENSSDUG00000016142	prpf6	96	92.667	ENSGALG00000006001	PRPF6	100	92.349	Gallus_gallus
ENSSDUG00000016142	prpf6	100	92.673	ENSGAFG00000021109	prpf6	100	92.673	Gambusia_affinis
ENSSDUG00000016142	prpf6	97	96.292	ENSGACG00000002576	prpf6	100	96.292	Gasterosteus_aculeatus
ENSSDUG00000016142	prpf6	98	91.667	ENSGAGG00000008653	PRPF6	96	92.766	Gopherus_agassizii
ENSSDUG00000016142	prpf6	96	92.349	ENSGGOG00000016876	PRPF6	100	91.923	Gorilla_gorilla
ENSSDUG00000016142	prpf6	100	98.039	ENSHBUG00000004496	prpf6	100	98.039	Haplochromis_burtoni
ENSSDUG00000016142	prpf6	96	93.092	ENSHGLG00000009222	PRPF6	100	92.667	Heterocephalus_glaber_female
ENSSDUG00000016142	prpf6	93	93.021	ENSHGLG00100016600	PRPF6	100	92.585	Heterocephalus_glaber_male
ENSSDUG00000016142	prpf6	100	96.388	ENSHCOG00000011513	prpf6	100	96.388	Hippocampus_comes
ENSSDUG00000016142	prpf6	100	93.224	ENSIPUG00000004912	prpf6	100	93.121	Ictalurus_punctatus
ENSSDUG00000016142	prpf6	96	90.658	ENSSTOG00000002922	PRPF6	100	89.809	Ictidomys_tridecemlineatus
ENSSDUG00000016142	prpf6	96	93.199	ENSJJAG00000000836	Prpf6	100	92.774	Jaculus_jaculus
ENSSDUG00000016142	prpf6	100	97.730	ENSKMAG00000017800	prpf6	100	97.730	Kryptolebias_marmoratus
ENSSDUG00000016142	prpf6	100	97.317	ENSLBEG00000012582	prpf6	100	97.317	Labrus_bergylta
ENSSDUG00000016142	prpf6	98	92.917	ENSLOCG00000004827	prpf6	96	92.553	Lepisosteus_oculatus
ENSSDUG00000016142	prpf6	96	92.455	ENSLAFG00000005272	PRPF6	100	92.030	Loxodonta_africana
ENSSDUG00000016142	prpf6	96	92.242	ENSMFAG00000037542	PRPF6	100	91.817	Macaca_fascicularis
ENSSDUG00000016142	prpf6	96	86.093	ENSMMUG00000015558	PRPF6	98	93.414	Macaca_mulatta
ENSSDUG00000016142	prpf6	96	79.661	ENSMNEG00000045555	PRPF6	100	79.237	Macaca_nemestrina
ENSSDUG00000016142	prpf6	100	98.142	ENSMAMG00000010718	prpf6	100	98.142	Mastacembelus_armatus
ENSSDUG00000016142	prpf6	97	98.081	ENSMZEG00005015261	-	100	98.081	Maylandia_zebra
ENSSDUG00000016142	prpf6	90	98.057	ENSMZEG00005026539	prpf6	100	98.057	Maylandia_zebra
ENSSDUG00000016142	prpf6	93	92.803	ENSMGAG00000006634	PRPF6	100	92.475	Meleagris_gallopavo
ENSSDUG00000016142	prpf6	96	93.199	ENSMAUG00000013969	Prpf6	100	92.774	Mesocricetus_auratus
ENSSDUG00000016142	prpf6	84	91.849	ENSMICG00000017793	PRPF6	98	91.862	Microcebus_murinus
ENSSDUG00000016142	prpf6	96	93.092	ENSMOCG00000001701	Prpf6	100	92.667	Microtus_ochrogaster
ENSSDUG00000016142	prpf6	96	97.957	ENSMMOG00000020419	prpf6	100	97.957	Mola_mola
ENSSDUG00000016142	prpf6	96	93.711	ENSMODG00000017051	PRPF6	99	93.218	Monodelphis_domestica
ENSSDUG00000016142	prpf6	95	98.587	ENSMALG00000000089	prpf6	100	98.587	Monopterus_albus
ENSSDUG00000016142	prpf6	96	86.823	MGP_CAROLIEiJ_G0024814	Prpf6	100	96.296	Mus_caroli
ENSSDUG00000016142	prpf6	96	93.199	ENSMUSG00000002455	Prpf6	100	96.296	Mus_musculus
ENSSDUG00000016142	prpf6	96	93.199	MGP_PahariEiJ_G0026262	Prpf6	100	96.296	Mus_pahari
ENSSDUG00000016142	prpf6	96	93.199	MGP_SPRETEiJ_G0025741	Prpf6	100	96.296	Mus_spretus
ENSSDUG00000016142	prpf6	86	92.831	ENSMPUG00000008673	PRPF6	98	92.831	Mustela_putorius_furo
ENSSDUG00000016142	prpf6	96	93.305	ENSNGAG00000003365	Prpf6	100	92.880	Nannospalax_galili
ENSSDUG00000016142	prpf6	100	98.142	ENSNBRG00000015025	prpf6	100	98.142	Neolamprologus_brichardi
ENSSDUG00000016142	prpf6	96	92.242	ENSNLEG00000010208	PRPF6	100	91.817	Nomascus_leucogenys
ENSSDUG00000016142	prpf6	96	83.534	ENSMEUG00000009824	-	90	83.794	Notamacropus_eugenii
ENSSDUG00000016142	prpf6	96	87.248	ENSODEG00000004841	PRPF6	100	86.823	Octodon_degus
ENSSDUG00000016142	prpf6	100	98.246	ENSONIG00000017406	prpf6	100	98.246	Oreochromis_niloticus
ENSSDUG00000016142	prpf6	96	93.092	ENSOANG00000004920	PRPF6	100	92.667	Ornithorhynchus_anatinus
ENSSDUG00000016142	prpf6	95	90.880	ENSOCUG00000014151	PRPF6	100	90.451	Oryctolagus_cuniculus
ENSSDUG00000016142	prpf6	100	95.562	ENSORLG00000009592	prpf6	100	95.562	Oryzias_latipes
ENSSDUG00000016142	prpf6	100	95.666	ENSORLG00020001458	prpf6	100	95.666	Oryzias_latipes_hni
ENSSDUG00000016142	prpf6	100	95.666	ENSORLG00015018762	prpf6	100	95.666	Oryzias_latipes_hsok
ENSSDUG00000016142	prpf6	100	96.182	ENSOMEG00000012174	prpf6	100	96.182	Oryzias_melastigma
ENSSDUG00000016142	prpf6	96	85.775	ENSOGAG00000007573	PRPF6	100	85.350	Otolemur_garnettii
ENSSDUG00000016142	prpf6	98	91.127	ENSOARG00000008776	PRPF6	99	91.817	Ovis_aries
ENSSDUG00000016142	prpf6	96	92.349	ENSPPAG00000008686	PRPF6	100	91.923	Pan_paniscus
ENSSDUG00000016142	prpf6	96	92.774	ENSPPRG00000008497	PRPF6	100	92.349	Panthera_pardus
ENSSDUG00000016142	prpf6	93	92.694	ENSPTIG00000011184	PRPF6	97	92.257	Panthera_tigris_altaica
ENSSDUG00000016142	prpf6	96	92.349	ENSPTRG00000013765	PRPF6	100	91.923	Pan_troglodytes
ENSSDUG00000016142	prpf6	96	92.030	ENSPANG00000024135	PRPF6	100	91.605	Papio_anubis
ENSSDUG00000016142	prpf6	98	93.451	ENSPKIG00000005627	prpf6	99	94.574	Paramormyrops_kingsleyae
ENSSDUG00000016142	prpf6	90	92.744	ENSPSIG00000007717	PRPF6	100	92.290	Pelodiscus_sinensis
ENSSDUG00000016142	prpf6	100	95.361	ENSPMGG00000008925	prpf6	100	94.639	Periophthalmus_magnuspinnatus
ENSSDUG00000016142	prpf6	96	93.199	ENSPEMG00000016036	Prpf6	100	92.774	Peromyscus_maniculatus_bairdii
ENSSDUG00000016142	prpf6	98	86.938	ENSPMAG00000006144	prpf6	100	87.566	Petromyzon_marinus
ENSSDUG00000016142	prpf6	96	93.199	ENSPCIG00000017909	PRPF6	100	92.774	Phascolarctos_cinereus
ENSSDUG00000016142	prpf6	100	96.115	ENSPFOG00000006431	prpf6	99	96.115	Poecilia_formosa
ENSSDUG00000016142	prpf6	100	96.904	ENSPLAG00000005974	prpf6	100	96.904	Poecilia_latipinna
ENSSDUG00000016142	prpf6	100	97.110	ENSPMEG00000009977	prpf6	100	97.110	Poecilia_mexicana
ENSSDUG00000016142	prpf6	100	97.007	ENSPREG00000017993	prpf6	95	97.007	Poecilia_reticulata
ENSSDUG00000016142	prpf6	96	91.817	ENSPPYG00000011256	PRPF6	100	91.392	Pongo_abelii
ENSSDUG00000016142	prpf6	91	94.935	ENSPCAG00000006536	PRPF6	88	94.281	Procavia_capensis
ENSSDUG00000016142	prpf6	96	92.349	ENSPCOG00000016881	PRPF6	100	91.923	Propithecus_coquereli
ENSSDUG00000016142	prpf6	96	86.823	ENSPVAG00000014316	PRPF6	100	86.397	Pteropus_vampyrus
ENSSDUG00000016142	prpf6	100	84.394	ENSPNYG00000001939	prpf6	100	84.394	Pundamilia_nyererei
ENSSDUG00000016142	prpf6	100	93.545	ENSPNAG00000015606	prpf6	100	93.545	Pygocentrus_nattereri
ENSSDUG00000016142	prpf6	96	93.092	ENSRNOG00000051498	Prpf6	100	92.667	Rattus_norvegicus
ENSSDUG00000016142	prpf6	96	92.242	ENSRBIG00000043613	PRPF6	100	91.817	Rhinopithecus_bieti
ENSSDUG00000016142	prpf6	96	89.206	ENSRROG00000040969	PRPF6	98	92.042	Rhinopithecus_roxellana
ENSSDUG00000016142	prpf6	87	89.558	ENSSBOG00000020632	PRPF6	93	87.370	Saimiri_boliviensis_boliviensis
ENSSDUG00000016142	prpf6	96	93.199	ENSSHAG00000016810	PRPF6	100	92.774	Sarcophilus_harrisii
ENSSDUG00000016142	prpf6	95	95.376	ENSSFOG00015020859	prpf6	100	95.376	Scleropages_formosus
ENSSDUG00000016142	prpf6	100	97.110	ENSSMAG00000008112	prpf6	100	97.110	Scophthalmus_maximus
ENSSDUG00000016142	prpf6	100	100.000	ENSSLDG00000025283	prpf6	99	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000016142	prpf6	90	91.373	ENSSPUG00000018260	PRPF6	100	90.919	Sphenodon_punctatus
ENSSDUG00000016142	prpf6	100	98.968	ENSSPAG00000015850	prpf6	100	98.968	Stegastes_partitus
ENSSDUG00000016142	prpf6	98	90.938	ENSSSCG00000029119	PRPF6	98	92.148	Sus_scrofa
ENSSDUG00000016142	prpf6	96	92.691	ENSTGUG00000007221	PRPF6	100	92.373	Taeniopygia_guttata
ENSSDUG00000016142	prpf6	100	97.110	ENSTRUG00000002920	prpf6	100	97.110	Takifugu_rubripes
ENSSDUG00000016142	prpf6	96	91.073	ENSTNIG00000017873	prpf6	100	91.073	Tetraodon_nigroviridis
ENSSDUG00000016142	prpf6	85	95.000	ENSTBEG00000005348	PRPF6	85	92.778	Tupaia_belangeri
ENSSDUG00000016142	prpf6	96	92.455	ENSTTRG00000013068	PRPF6	100	92.030	Tursiops_truncatus
ENSSDUG00000016142	prpf6	94	91.196	ENSUMAG00000021631	PRPF6	98	90.840	Ursus_maritimus
ENSSDUG00000016142	prpf6	96	92.774	ENSVVUG00000014948	PRPF6	100	92.349	Vulpes_vulpes
ENSSDUG00000016142	prpf6	98	91.137	ENSXETG00000012054	prpf6	97	92.128	Xenopus_tropicalis
ENSSDUG00000016142	prpf6	100	97.214	ENSXCOG00000008082	prpf6	100	97.214	Xiphophorus_couchianus
ENSSDUG00000016142	prpf6	100	97.214	ENSXMAG00000015581	prpf6	100	97.214	Xiphophorus_maculatus