EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000016158 (Gene tree)
Gene ID: 111230306
Gene Symbol: alyref
Alias: tho4|thoc4|zgc:171753
Full Name: Aly/REF export factor
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 3698 bases
Position: chrBDQW01000260.1:1626086-1629783
Accession: 111230306
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000022212	RRM_1	PF00076.22	1.3e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000022619	-	1838	XM_022756996	ENSSDUP00000022212	272 (aa)	XP_022612717	UPI000BBE34B3

Gene Model

Click here to download ENSSDUG00000016158's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03013	RNA transport	KEGG
sdu03015	mRNA surveillance pathway	KEGG
sdu03040	Spliceosome	KEGG
sdu05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000016158's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000016158	alyref	100	52.465	ENSSDUG00000003992	-	100	54.255

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000016158	alyref	100	54.348	ENSAPOG00000000183	-	100	53.261	Acanthochromis_polyacanthus
ENSSDUG00000016158	alyref	100	52.113	ENSACIG00000020351	-	100	52.113	Amphilophus_citrinellus
ENSSDUG00000016158	alyref	99	82.657	ENSACIG00000006351	alyref	98	84.615	Amphilophus_citrinellus
ENSSDUG00000016158	alyref	100	53.261	ENSAOCG00000019305	-	100	52.174	Amphiprion_ocellaris
ENSSDUG00000016158	alyref	100	97.059	ENSAOCG00000014012	alyref	100	97.059	Amphiprion_ocellaris
ENSSDUG00000016158	alyref	100	53.986	ENSAPEG00000013527	-	100	52.174	Amphiprion_percula
ENSSDUG00000016158	alyref	100	97.059	ENSAPEG00000014603	alyref	100	97.059	Amphiprion_percula
ENSSDUG00000016158	alyref	100	80.216	ENSATEG00000004307	alyref	100	83.094	Anabas_testudineus
ENSSDUG00000016158	alyref	100	57.971	ENSATEG00000000382	-	100	55.435	Anabas_testudineus
ENSSDUG00000016158	alyref	50	70.345	ENSAPLG00000014745	-	100	69.286	Anas_platyrhynchos
ENSSDUG00000016158	alyref	100	56.429	ENSACLG00000010184	-	100	55.000	Astatotilapia_calliptera
ENSSDUG00000016158	alyref	100	87.546	ENSACLG00000008432	alyref	100	88.645	Astatotilapia_calliptera
ENSSDUG00000016158	alyref	100	73.571	ENSAMXG00000007359	alyref	100	73.929	Astyanax_mexicanus
ENSSDUG00000016158	alyref	99	48.175	ENSCING00000013568	-	99	45.583	Ciona_intestinalis
ENSSDUG00000016158	alyref	99	44.161	ENSCSAVG00000003324	-	99	42.857	Ciona_savignyi
ENSSDUG00000016158	alyref	100	86.081	ENSCSEG00000017800	alyref	100	81.319	Cynoglossus_semilaevis
ENSSDUG00000016158	alyref	100	83.088	ENSCVAG00000014869	alyref	100	81.250	Cyprinodon_variegatus
ENSSDUG00000016158	alyref	100	49.270	ENSCVAG00000007789	-	100	46.403	Cyprinodon_variegatus
ENSSDUG00000016158	alyref	100	81.206	ENSDARG00000077732	alyref	100	75.177	Danio_rerio
ENSSDUG00000016158	alyref	97	44.912	FBgn0010774	Ref1	73	46.305	Drosophila_melanogaster
ENSSDUG00000016158	alyref	99	51.301	ENSEBUG00000008253	alyref	95	48.327	Eptatretus_burgeri
ENSSDUG00000016158	alyref	72	47.030	ENSEBUG00000006305	alyref	100	39.716	Eptatretus_burgeri
ENSSDUG00000016158	alyref	100	74.275	ENSELUG00000017178	alyref	100	68.231	Esox_lucius
ENSSDUG00000016158	alyref	100	69.534	ENSELUG00000008849	-	100	63.799	Esox_lucius
ENSSDUG00000016158	alyref	59	79.141	ENSFALG00000011923	-	96	71.795	Ficedula_albicollis
ENSSDUG00000016158	alyref	100	50.000	ENSFHEG00000004698	-	100	47.101	Fundulus_heteroclitus
ENSSDUG00000016158	alyref	100	84.615	ENSFHEG00000019426	alyref	100	82.784	Fundulus_heteroclitus
ENSSDUG00000016158	alyref	69	60.000	ENSGMOG00000013122	-	100	58.333	Gadus_morhua
ENSSDUG00000016158	alyref	100	72.263	ENSGMOG00000009882	alyref	100	70.073	Gadus_morhua
ENSSDUG00000016158	alyref	100	83.696	ENSGAFG00000006014	alyref	100	79.348	Gambusia_affinis
ENSSDUG00000016158	alyref	100	48.913	ENSGAFG00000007573	-	100	45.652	Gambusia_affinis
ENSSDUG00000016158	alyref	100	87.546	ENSHBUG00000020196	alyref	100	88.645	Haplochromis_burtoni
ENSSDUG00000016158	alyref	100	56.028	ENSHBUG00000001454	-	100	54.643	Haplochromis_burtoni
ENSSDUG00000016158	alyref	98	49.630	ENSHCOG00000012825	-	94	47.955	Hippocampus_comes
ENSSDUG00000016158	alyref	100	75.180	ENSIPUG00000009469	alyref	100	71.942	Ictalurus_punctatus
ENSSDUG00000016158	alyref	74	65.025	ENSSTOG00000016570	-	92	62.500	Ictidomys_tridecemlineatus
ENSSDUG00000016158	alyref	100	84.672	ENSKMAG00000008912	alyref	100	84.307	Kryptolebias_marmoratus
ENSSDUG00000016158	alyref	100	53.091	ENSKMAG00000006462	-	100	52.000	Kryptolebias_marmoratus
ENSSDUG00000016158	alyref	99	48.375	ENSLBEG00000012930	-	99	47.426	Labrus_bergylta
ENSSDUG00000016158	alyref	100	50.853	ENSLBEG00000005387	-	100	50.000	Labrus_bergylta
ENSSDUG00000016158	alyref	100	88.087	ENSLBEG00000023118	alyref	90	83.032	Labrus_bergylta
ENSSDUG00000016158	alyref	78	72.222	ENSLOCG00000013879	alyref	89	72.685	Lepisosteus_oculatus
ENSSDUG00000016158	alyref	100	52.899	ENSMAMG00000005464	-	100	51.087	Mastacembelus_armatus
ENSSDUG00000016158	alyref	100	86.813	ENSMAMG00000003034	alyref	100	84.982	Mastacembelus_armatus
ENSSDUG00000016158	alyref	100	87.546	ENSMZEG00005008639	alyref	100	88.645	Maylandia_zebra
ENSSDUG00000016158	alyref	100	56.071	ENSMZEG00005012096	-	100	54.643	Maylandia_zebra
ENSSDUG00000016158	alyref	99	90.706	ENSMMOG00000012458	alyref	97	84.926	Mola_mola
ENSSDUG00000016158	alyref	99	46.863	ENSMMOG00000007032	-	98	44.211	Mola_mola
ENSSDUG00000016158	alyref	100	53.659	ENSMALG00000006054	-	100	50.178	Monopterus_albus
ENSSDUG00000016158	alyref	100	58.451	ENSMLUG00000006521	-	100	57.651	Myotis_lucifugus
ENSSDUG00000016158	alyref	98	56.458	ENSMLUG00000022178	-	98	55.351	Myotis_lucifugus
ENSSDUG00000016158	alyref	98	55.282	ENSMLUG00000022467	-	98	52.330	Myotis_lucifugus
ENSSDUG00000016158	alyref	98	57.971	ENSMLUG00000030671	-	99	53.214	Myotis_lucifugus
ENSSDUG00000016158	alyref	100	59.574	ENSMLUG00000004098	-	100	58.456	Myotis_lucifugus
ENSSDUG00000016158	alyref	98	54.244	ENSMLUG00000009247	-	98	52.399	Myotis_lucifugus
ENSSDUG00000016158	alyref	100	59.140	ENSMLUG00000014372	-	100	58.423	Myotis_lucifugus
ENSSDUG00000016158	alyref	98	54.480	ENSMLUG00000028605	-	98	54.317	Myotis_lucifugus
ENSSDUG00000016158	alyref	100	70.221	ENSNGAG00000022014	-	100	63.971	Nannospalax_galili
ENSSDUG00000016158	alyref	100	57.194	ENSNBRG00000017460	-	100	55.755	Neolamprologus_brichardi
ENSSDUG00000016158	alyref	100	84.364	ENSNBRG00000001747	alyref	100	88.000	Neolamprologus_brichardi
ENSSDUG00000016158	alyref	100	88.489	ENSONIG00000019434	alyref	100	90.288	Oreochromis_niloticus
ENSSDUG00000016158	alyref	100	57.971	ENSONIG00000003296	-	100	57.040	Oreochromis_niloticus
ENSSDUG00000016158	alyref	99	40.506	ENSORLG00000001620	-	58	47.642	Oryzias_latipes
ENSSDUG00000016158	alyref	100	87.591	ENSORLG00020011942	alyref	100	82.847	Oryzias_latipes_hni
ENSSDUG00000016158	alyref	99	49.455	ENSORLG00020015673	-	99	47.273	Oryzias_latipes_hni
ENSSDUG00000016158	alyref	99	49.275	ENSORLG00015015143	-	99	45.548	Oryzias_latipes_hsok
ENSSDUG00000016158	alyref	100	89.706	ENSORLG00015022664	alyref	100	84.191	Oryzias_latipes_hsok
ENSSDUG00000016158	alyref	100	86.447	ENSOMEG00000019176	alyref	100	78.755	Oryzias_melastigma
ENSSDUG00000016158	alyref	99	49.632	ENSOMEG00000007158	-	97	45.756	Oryzias_melastigma
ENSSDUG00000016158	alyref	71	76.684	ENSPPAG00000036403	-	68	69.841	Pan_paniscus
ENSSDUG00000016158	alyref	100	74.909	ENSPKIG00000007070	alyref	100	71.636	Paramormyrops_kingsleyae
ENSSDUG00000016158	alyref	99	71.795	ENSPKIG00000006233	-	81	64.469	Paramormyrops_kingsleyae
ENSSDUG00000016158	alyref	72	48.205	ENSPMGG00000012994	-	97	45.641	Periophthalmus_magnuspinnatus
ENSSDUG00000016158	alyref	99	80.669	ENSPMGG00000016600	alyref	91	83.456	Periophthalmus_magnuspinnatus
ENSSDUG00000016158	alyref	100	64.706	ENSPEMG00000016628	-	100	59.926	Peromyscus_maniculatus_bairdii
ENSSDUG00000016158	alyref	100	47.687	ENSPFOG00000017094	-	100	45.290	Poecilia_formosa
ENSSDUG00000016158	alyref	100	79.422	ENSPFOG00000022825	alyref	99	79.061	Poecilia_formosa
ENSSDUG00000016158	alyref	100	47.687	ENSPLAG00000014380	-	100	45.290	Poecilia_latipinna
ENSSDUG00000016158	alyref	100	80.072	ENSPLAG00000006948	alyref	100	79.348	Poecilia_latipinna
ENSSDUG00000016158	alyref	100	47.687	ENSPMEG00000023039	-	100	45.290	Poecilia_mexicana
ENSSDUG00000016158	alyref	99	81.387	ENSPMEG00000003547	alyref	100	79.061	Poecilia_mexicana
ENSSDUG00000016158	alyref	100	48.399	ENSPREG00000003649	-	100	46.715	Poecilia_reticulata
ENSSDUG00000016158	alyref	100	80.435	ENSPREG00000015795	alyref	100	79.710	Poecilia_reticulata
ENSSDUG00000016158	alyref	100	87.546	ENSPNYG00000017498	alyref	100	88.645	Pundamilia_nyererei
ENSSDUG00000016158	alyref	99	54.545	ENSPNYG00000002879	-	98	52.174	Pundamilia_nyererei
ENSSDUG00000016158	alyref	100	77.978	ENSPNAG00000002531	alyref	100	73.551	Pygocentrus_nattereri
ENSSDUG00000016158	alyref	73	75.879	ENSSBOG00000030924	-	87	68.687	Saimiri_boliviensis_boliviensis
ENSSDUG00000016158	alyref	99	55.273	ENSSHAG00000012866	-	99	52.574	Sarcophilus_harrisii
ENSSDUG00000016158	alyref	99	56.071	ENSSHAG00000000609	-	99	54.015	Sarcophilus_harrisii
ENSSDUG00000016158	alyref	70	76.440	ENSSFOG00015003678	alyref	83	68.586	Scleropages_formosus
ENSSDUG00000016158	alyref	94	65.891	ENSSFOG00015003923	alyref	73	72.770	Scleropages_formosus
ENSSDUG00000016158	alyref	100	50.534	ENSSMAG00000011169	-	100	54.774	Scophthalmus_maximus
ENSSDUG00000016158	alyref	100	86.182	ENSSMAG00000009283	alyref	100	81.818	Scophthalmus_maximus
ENSSDUG00000016158	alyref	100	99.267	ENSSLDG00000017803	alyref	100	99.267	Seriola_lalandi_dorsalis
ENSSDUG00000016158	alyref	99	54.579	ENSSPAG00000017028	-	96	53.114	Stegastes_partitus
ENSSDUG00000016158	alyref	100	51.943	ENSTRUG00000003051	-	100	49.281	Takifugu_rubripes
ENSSDUG00000016158	alyref	100	76.087	ENSTNIG00000011595	alyref	100	71.898	Tetraodon_nigroviridis
ENSSDUG00000016158	alyref	100	50.909	ENSTNIG00000014136	-	100	45.818	Tetraodon_nigroviridis
ENSSDUG00000016158	alyref	86	68.670	ENSVVUG00000000272	-	82	71.354	Vulpes_vulpes
ENSSDUG00000016158	alyref	99	82.784	ENSXCOG00000018047	alyref	99	77.536	Xiphophorus_couchianus
ENSSDUG00000016158	alyref	100	48.746	ENSXMAG00000018086	-	100	46.377	Xiphophorus_maculatus
ENSSDUG00000016158	alyref	99	82.784	ENSXMAG00000012218	alyref	99	77.536	Xiphophorus_maculatus