EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000016283 (Gene tree)
Gene ID: -
Gene Symbol: snrpf
Alias: snrpfl
Full Name: small nuclear ribonucleoprotein polypeptide F
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 2447 bases
Position: chrBDQW01000138.1:2612396-2614842
Accession: 111224863
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000022358	LSM	PF01423.22	3.6e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000022768	-	903	XM_022749549	ENSSDUP00000022358	84 (aa)	XP_022605270	-

Gene Model

Click here to download ENSSDUG00000016283's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000016283's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000016283	snrpf	77	96.923	ENSG00000139343	SNRPF	76	96.923	Homo_sapiens
ENSSDUG00000016283	snrpf	76	100.000	ENSAPOG00000003377	snrpf	50	100.000	Acanthochromis_polyacanthus
ENSSDUG00000016283	snrpf	79	84.848	ENSAMEG00000018718	-	77	84.848	Ailuropoda_melanoleuca
ENSSDUG00000016283	snrpf	76	96.875	ENSAMEG00000002166	-	75	96.875	Ailuropoda_melanoleuca
ENSSDUG00000016283	snrpf	75	100.000	ENSACIG00000013216	snrpf	74	100.000	Amphilophus_citrinellus
ENSSDUG00000016283	snrpf	75	100.000	ENSAOCG00000015108	snrpf	74	100.000	Amphiprion_ocellaris
ENSSDUG00000016283	snrpf	75	100.000	ENSAPEG00000022022	snrpf	74	100.000	Amphiprion_percula
ENSSDUG00000016283	snrpf	75	100.000	ENSATEG00000022625	snrpf	68	100.000	Anabas_testudineus
ENSSDUG00000016283	snrpf	76	95.312	ENSACAG00000014073	SNRPF	74	95.312	Anolis_carolinensis
ENSSDUG00000016283	snrpf	77	96.923	ENSANAG00000032845	SNRPF	76	96.923	Aotus_nancymaae
ENSSDUG00000016283	snrpf	73	86.885	ENSANAG00000020297	-	56	86.885	Aotus_nancymaae
ENSSDUG00000016283	snrpf	77	67.692	ENSANAG00000025860	-	86	59.259	Aotus_nancymaae
ENSSDUG00000016283	snrpf	75	100.000	ENSACLG00000016066	snrpf	74	100.000	Astatotilapia_calliptera
ENSSDUG00000016283	snrpf	76	98.438	ENSAMXG00000007421	snrpf	75	98.438	Astyanax_mexicanus
ENSSDUG00000016283	snrpf	77	89.231	ENSBTAG00000050012	-	80	89.231	Bos_taurus
ENSSDUG00000016283	snrpf	77	96.923	ENSBTAG00000016271	SNRPF	76	96.923	Bos_taurus
ENSSDUG00000016283	snrpf	74	72.581	WBGene00004918	snr-5	73	72.581	Caenorhabditis_elegans
ENSSDUG00000016283	snrpf	77	96.923	ENSCJAG00000002705	-	76	96.923	Callithrix_jacchus
ENSSDUG00000016283	snrpf	75	90.476	ENSCAFG00000031151	-	73	90.476	Canis_familiaris
ENSSDUG00000016283	snrpf	77	96.923	ENSCAFG00000006395	-	59	96.923	Canis_familiaris
ENSSDUG00000016283	snrpf	71	95.000	ENSCAFG00020013161	-	64	95.000	Canis_lupus_dingo
ENSSDUG00000016283	snrpf	75	90.476	ENSCAFG00020010823	-	73	90.476	Canis_lupus_dingo
ENSSDUG00000016283	snrpf	77	92.424	ENSTSYG00000036502	-	75	92.424	Carlito_syrichta
ENSSDUG00000016283	snrpf	77	81.538	ENSTSYG00000030635	-	75	81.538	Carlito_syrichta
ENSSDUG00000016283	snrpf	75	93.651	ENSTSYG00000031636	-	53	93.651	Carlito_syrichta
ENSSDUG00000016283	snrpf	76	96.875	ENSCAPG00000007242	SNRPF	75	96.875	Cavia_aperea
ENSSDUG00000016283	snrpf	77	96.923	ENSCPOG00000013898	SNRPF	76	96.923	Cavia_porcellus
ENSSDUG00000016283	snrpf	77	96.923	ENSCCAG00000037378	-	76	96.923	Cebus_capucinus
ENSSDUG00000016283	snrpf	77	96.923	ENSCCAG00000017356	-	76	96.923	Cebus_capucinus
ENSSDUG00000016283	snrpf	77	86.154	ENSCCAG00000033627	-	51	86.154	Cebus_capucinus
ENSSDUG00000016283	snrpf	77	96.923	ENSCLAG00000007200	SNRPF	76	96.923	Chinchilla_lanigera
ENSSDUG00000016283	snrpf	77	96.923	ENSCSAG00000003602	-	53	96.923	Chlorocebus_sabaeus
ENSSDUG00000016283	snrpf	76	96.875	ENSCHOG00000009392	SNRPF	100	96.875	Choloepus_hoffmanni
ENSSDUG00000016283	snrpf	76	89.062	ENSCPBG00000001985	-	76	89.062	Chrysemys_picta_bellii
ENSSDUG00000016283	snrpf	77	87.692	ENSCPBG00000026463	-	76	87.692	Chrysemys_picta_bellii
ENSSDUG00000016283	snrpf	77	89.231	ENSCPBG00000006227	-	76	89.231	Chrysemys_picta_bellii
ENSSDUG00000016283	snrpf	95	81.250	ENSCPBG00000024287	-	60	81.250	Chrysemys_picta_bellii
ENSSDUG00000016283	snrpf	76	90.625	ENSCSAVG00000007498	-	73	90.625	Ciona_savignyi
ENSSDUG00000016283	snrpf	77	96.923	ENSCGRG00001017100	-	76	96.923	Cricetulus_griseus_chok1gshd
ENSSDUG00000016283	snrpf	77	87.692	ENSCGRG00001008965	-	50	87.692	Cricetulus_griseus_chok1gshd
ENSSDUG00000016283	snrpf	77	87.692	ENSCGRG00000018878	-	81	87.692	Cricetulus_griseus_crigri
ENSSDUG00000016283	snrpf	77	96.923	ENSCGRG00000000336	-	76	96.923	Cricetulus_griseus_crigri
ENSSDUG00000016283	snrpf	77	98.462	ENSCSEG00000004748	snrpf	76	98.462	Cynoglossus_semilaevis
ENSSDUG00000016283	snrpf	76	100.000	ENSCVAG00000000397	snrpf	51	100.000	Cyprinodon_variegatus
ENSSDUG00000016283	snrpf	77	97.015	ENSDARG00000105037	snrpf	76	97.015	Danio_rerio
ENSSDUG00000016283	snrpf	77	95.385	ENSDNOG00000048989	-	58	95.385	Dasypus_novemcinctus
ENSSDUG00000016283	snrpf	77	84.615	ENSDNOG00000049373	-	68	71.605	Dasypus_novemcinctus
ENSSDUG00000016283	snrpf	58	93.878	ENSDORG00000029740	-	60	93.878	Dipodomys_ordii
ENSSDUG00000016283	snrpf	77	86.154	ENSDORG00000025351	-	90	86.154	Dipodomys_ordii
ENSSDUG00000016283	snrpf	75	80.952	FBgn0000426	SmF	72	80.952	Drosophila_melanogaster
ENSSDUG00000016283	snrpf	77	96.923	ENSETEG00000001558	-	76	96.923	Echinops_telfairi
ENSSDUG00000016283	snrpf	73	93.443	ENSEBUG00000001793	-	66	93.443	Eptatretus_burgeri
ENSSDUG00000016283	snrpf	77	96.923	ENSECAG00000019817	SNRPF	53	96.923	Equus_caballus
ENSSDUG00000016283	snrpf	76	96.875	ENSEEUG00000013509	SNRPF	75	96.875	Erinaceus_europaeus
ENSSDUG00000016283	snrpf	77	96.923	ENSELUG00000007737	RUXF	75	96.923	Esox_lucius
ENSSDUG00000016283	snrpf	77	96.923	ENSELUG00000003121	RUXF	76	96.923	Esox_lucius
ENSSDUG00000016283	snrpf	75	76.190	ENSFCAG00000021942	-	77	76.190	Felis_catus
ENSSDUG00000016283	snrpf	75	73.016	ENSFCAG00000031148	-	58	73.016	Felis_catus
ENSSDUG00000016283	snrpf	77	96.923	ENSFCAG00000029966	-	76	96.923	Felis_catus
ENSSDUG00000016283	snrpf	76	96.875	ENSFALG00000010799	SNRPF	74	96.875	Ficedula_albicollis
ENSSDUG00000016283	snrpf	77	96.923	ENSFDAG00000002831	-	76	96.923	Fukomys_damarensis
ENSSDUG00000016283	snrpf	76	100.000	ENSFHEG00000003240	snrpf	56	100.000	Fundulus_heteroclitus
ENSSDUG00000016283	snrpf	76	100.000	ENSGMOG00000007741	snrpf	75	100.000	Gadus_morhua
ENSSDUG00000016283	snrpf	77	96.923	ENSGALG00000011409	SNRPF	76	96.923	Gallus_gallus
ENSSDUG00000016283	snrpf	75	100.000	ENSGAFG00000016187	snrpf	72	100.000	Gambusia_affinis
ENSSDUG00000016283	snrpf	76	98.438	ENSGACG00000020055	snrpf	75	98.438	Gasterosteus_aculeatus
ENSSDUG00000016283	snrpf	69	89.655	ENSGAGG00000022991	-	68	89.655	Gopherus_agassizii
ENSSDUG00000016283	snrpf	77	86.154	ENSGAGG00000014132	-	78	86.154	Gopherus_agassizii
ENSSDUG00000016283	snrpf	63	94.340	ENSGAGG00000012945	-	60	92.308	Gopherus_agassizii
ENSSDUG00000016283	snrpf	76	90.625	ENSGAGG00000020974	-	54	90.625	Gopherus_agassizii
ENSSDUG00000016283	snrpf	77	72.308	ENSGGOG00000039936	-	71	72.308	Gorilla_gorilla
ENSSDUG00000016283	snrpf	77	96.923	ENSGGOG00000001127	-	76	96.923	Gorilla_gorilla
ENSSDUG00000016283	snrpf	77	69.231	ENSGGOG00000039564	-	77	69.231	Gorilla_gorilla
ENSSDUG00000016283	snrpf	77	96.923	ENSHGLG00000009108	SNRPF	76	96.923	Heterocephalus_glaber_female
ENSSDUG00000016283	snrpf	77	95.385	ENSHGLG00000021172	-	76	95.385	Heterocephalus_glaber_female
ENSSDUG00000016283	snrpf	77	95.385	ENSHGLG00100019596	-	76	95.385	Heterocephalus_glaber_male
ENSSDUG00000016283	snrpf	76	96.875	ENSHGLG00100008103	-	75	96.875	Heterocephalus_glaber_male
ENSSDUG00000016283	snrpf	82	84.211	ENSHCOG00000018663	snrpf	59	84.211	Hippocampus_comes
ENSSDUG00000016283	snrpf	77	100.000	ENSIPUG00000018994	snrpf	76	100.000	Ictalurus_punctatus
ENSSDUG00000016283	snrpf	77	96.923	ENSSTOG00000010434	-	76	96.923	Ictidomys_tridecemlineatus
ENSSDUG00000016283	snrpf	77	84.615	ENSJJAG00000010502	-	77	84.615	Jaculus_jaculus
ENSSDUG00000016283	snrpf	77	76.923	ENSJJAG00000004558	-	77	76.923	Jaculus_jaculus
ENSSDUG00000016283	snrpf	77	96.923	ENSJJAG00000011272	-	76	96.923	Jaculus_jaculus
ENSSDUG00000016283	snrpf	55	91.304	ENSJJAG00000004828	-	71	91.304	Jaculus_jaculus
ENSSDUG00000016283	snrpf	77	98.462	ENSKMAG00000013566	snrpf	76	98.462	Kryptolebias_marmoratus
ENSSDUG00000016283	snrpf	77	98.462	ENSLBEG00000008800	snrpf	76	98.462	Labrus_bergylta
ENSSDUG00000016283	snrpf	77	95.385	ENSLACG00000002456	-	56	95.385	Latimeria_chalumnae
ENSSDUG00000016283	snrpf	77	96.923	ENSLOCG00000015744	snrpf	76	96.923	Lepisosteus_oculatus
ENSSDUG00000016283	snrpf	76	96.875	ENSLAFG00000017426	SNRPF	74	96.875	Loxodonta_africana
ENSSDUG00000016283	snrpf	75	98.413	ENSMAMG00000016593	snrpf	74	98.413	Mastacembelus_armatus
ENSSDUG00000016283	snrpf	75	100.000	ENSMZEG00005014701	snrpf	74	100.000	Maylandia_zebra
ENSSDUG00000016283	snrpf	75	96.825	ENSMGAG00000011453	-	57	96.825	Meleagris_gallopavo
ENSSDUG00000016283	snrpf	63	96.226	ENSMAUG00000019737	-	72	96.226	Mesocricetus_auratus
ENSSDUG00000016283	snrpf	77	92.308	ENSMAUG00000008799	-	76	92.308	Mesocricetus_auratus
ENSSDUG00000016283	snrpf	63	96.226	ENSMAUG00000016909	-	72	96.226	Mesocricetus_auratus
ENSSDUG00000016283	snrpf	74	67.742	ENSMAUG00000010289	-	72	67.742	Mesocricetus_auratus
ENSSDUG00000016283	snrpf	77	96.923	ENSMICG00000012153	-	76	96.923	Microcebus_murinus
ENSSDUG00000016283	snrpf	77	90.769	ENSMICG00000030494	-	52	90.769	Microcebus_murinus
ENSSDUG00000016283	snrpf	77	83.077	ENSMOCG00000022166	-	71	83.077	Microtus_ochrogaster
ENSSDUG00000016283	snrpf	77	96.923	ENSMOCG00000020437	Snrpf	76	96.923	Microtus_ochrogaster
ENSSDUG00000016283	snrpf	69	81.034	ENSMOCG00000020220	-	74	81.034	Microtus_ochrogaster
ENSSDUG00000016283	snrpf	75	100.000	ENSMMOG00000007127	snrpf	75	100.000	Mola_mola
ENSSDUG00000016283	snrpf	77	96.923	ENSMODG00000008091	SNRPF	57	96.923	Monodelphis_domestica
ENSSDUG00000016283	snrpf	75	100.000	ENSMALG00000012328	snrpf	74	100.000	Monopterus_albus
ENSSDUG00000016283	snrpf	77	96.923	MGP_CAROLIEiJ_G0015735	-	76	96.923	Mus_caroli
ENSSDUG00000016283	snrpf	77	96.923	ENSMUSG00000020018	Snrpf	76	96.923	Mus_musculus
ENSSDUG00000016283	snrpf	77	96.923	MGP_PahariEiJ_G0031350	Snrpf	76	96.923	Mus_pahari
ENSSDUG00000016283	snrpf	77	96.923	MGP_SPRETEiJ_G0016553	Snrpf	76	96.923	Mus_spretus
ENSSDUG00000016283	snrpf	77	96.923	ENSMPUG00000007176	-	58	96.923	Mustela_putorius_furo
ENSSDUG00000016283	snrpf	76	96.875	ENSMLUG00000013577	-	75	96.875	Myotis_lucifugus
ENSSDUG00000016283	snrpf	77	76.923	ENSMLUG00000026269	-	61	76.923	Myotis_lucifugus
ENSSDUG00000016283	snrpf	77	96.923	ENSMLUG00000029201	-	61	96.923	Myotis_lucifugus
ENSSDUG00000016283	snrpf	77	96.923	ENSMLUG00000027932	-	61	96.923	Myotis_lucifugus
ENSSDUG00000016283	snrpf	77	96.923	ENSMLUG00000026149	-	61	96.923	Myotis_lucifugus
ENSSDUG00000016283	snrpf	60	90.000	ENSNGAG00000005851	-	59	90.000	Nannospalax_galili
ENSSDUG00000016283	snrpf	77	96.923	ENSNGAG00000024292	-	76	96.923	Nannospalax_galili
ENSSDUG00000016283	snrpf	76	100.000	ENSNBRG00000011682	snrpf	65	100.000	Neolamprologus_brichardi
ENSSDUG00000016283	snrpf	77	96.923	ENSODEG00000010328	-	76	96.923	Octodon_degus
ENSSDUG00000016283	snrpf	77	95.385	ENSOCUG00000010925	SNRPF	58	95.385	Oryctolagus_cuniculus
ENSSDUG00000016283	snrpf	75	98.413	ENSORLG00020008216	snrpf	75	98.413	Oryzias_latipes_hni
ENSSDUG00000016283	snrpf	75	98.413	ENSORLG00015007418	snrpf	75	98.413	Oryzias_latipes_hsok
ENSSDUG00000016283	snrpf	75	98.413	ENSOMEG00000003018	snrpf	74	98.413	Oryzias_melastigma
ENSSDUG00000016283	snrpf	77	95.385	ENSOGAG00000030323	-	76	95.385	Otolemur_garnettii
ENSSDUG00000016283	snrpf	77	96.923	ENSOARG00000011853	-	57	96.923	Ovis_aries
ENSSDUG00000016283	snrpf	77	69.231	ENSPPAG00000037479	-	77	69.231	Pan_paniscus
ENSSDUG00000016283	snrpf	77	72.308	ENSPPAG00000037544	-	71	72.308	Pan_paniscus
ENSSDUG00000016283	snrpf	76	71.875	ENSPPRG00000007449	-	65	71.875	Panthera_pardus
ENSSDUG00000016283	snrpf	77	96.923	ENSPPRG00000005875	-	76	96.923	Panthera_pardus
ENSSDUG00000016283	snrpf	75	73.016	ENSPTIG00000005117	-	76	71.875	Panthera_tigris_altaica
ENSSDUG00000016283	snrpf	77	96.923	ENSPTIG00000007520	SNRPF	76	96.923	Panthera_tigris_altaica
ENSSDUG00000016283	snrpf	77	69.231	ENSPTRG00000047717	-	77	69.231	Pan_troglodytes
ENSSDUG00000016283	snrpf	77	72.308	ENSPTRG00000043814	-	71	72.308	Pan_troglodytes
ENSSDUG00000016283	snrpf	76	100.000	ENSPKIG00000014784	snrpf	70	100.000	Paramormyrops_kingsleyae
ENSSDUG00000016283	snrpf	76	96.875	ENSPSIG00000016462	SNRPF	74	96.875	Pelodiscus_sinensis
ENSSDUG00000016283	snrpf	75	100.000	ENSPMGG00000023548	snrpf	75	100.000	Periophthalmus_magnuspinnatus
ENSSDUG00000016283	snrpf	77	96.923	ENSPEMG00000023326	Snrpf	76	96.923	Peromyscus_maniculatus_bairdii
ENSSDUG00000016283	snrpf	75	100.000	ENSPLAG00000023932	snrpf	74	100.000	Poecilia_latipinna
ENSSDUG00000016283	snrpf	75	100.000	ENSPMEG00000003377	snrpf	74	100.000	Poecilia_mexicana
ENSSDUG00000016283	snrpf	75	100.000	ENSPREG00000022635	snrpf	72	100.000	Poecilia_reticulata
ENSSDUG00000016283	snrpf	77	96.923	ENSPPYG00000004847	-	76	96.923	Pongo_abelii
ENSSDUG00000016283	snrpf	77	96.923	ENSPCOG00000023833	-	76	96.923	Propithecus_coquereli
ENSSDUG00000016283	snrpf	77	96.923	ENSPVAG00000009036	SNRPF	76	96.923	Pteropus_vampyrus
ENSSDUG00000016283	snrpf	75	100.000	ENSPNYG00000021712	snrpf	74	100.000	Pundamilia_nyererei
ENSSDUG00000016283	snrpf	75	98.413	ENSPNAG00000019117	snrpf	74	98.413	Pygocentrus_nattereri
ENSSDUG00000016283	snrpf	77	96.923	ENSRNOG00000005556	Snrpf	76	96.923	Rattus_norvegicus
ENSSDUG00000016283	snrpf	77	93.846	ENSRBIG00000030414	-	76	93.846	Rhinopithecus_bieti
ENSSDUG00000016283	snrpf	77	93.846	ENSRROG00000021975	-	76	93.846	Rhinopithecus_roxellana
ENSSDUG00000016283	snrpf	74	55.556	YPR182W	SMX3	73	55.556	Saccharomyces_cerevisiae
ENSSDUG00000016283	snrpf	77	96.923	ENSSBOG00000036179	-	76	96.923	Saimiri_boliviensis_boliviensis
ENSSDUG00000016283	snrpf	77	81.538	ENSSBOG00000032297	-	73	81.538	Saimiri_boliviensis_boliviensis
ENSSDUG00000016283	snrpf	77	96.923	ENSSBOG00000012868	-	76	96.923	Saimiri_boliviensis_boliviensis
ENSSDUG00000016283	snrpf	79	76.812	ENSSBOG00000027638	-	78	76.812	Saimiri_boliviensis_boliviensis
ENSSDUG00000016283	snrpf	76	96.875	ENSSHAG00000012294	SNRPF	58	96.875	Sarcophilus_harrisii
ENSSDUG00000016283	snrpf	76	100.000	ENSSFOG00015021523	snrpf	96	100.000	Scleropages_formosus
ENSSDUG00000016283	snrpf	77	96.923	ENSSMAG00000005533	snrpf	75	96.923	Scophthalmus_maximus
ENSSDUG00000016283	snrpf	76	73.438	ENSSLDG00000003885	-	78	73.438	Seriola_lalandi_dorsalis
ENSSDUG00000016283	snrpf	77	98.462	ENSSLDG00000005119	snrpf	76	98.462	Seriola_lalandi_dorsalis
ENSSDUG00000016283	snrpf	75	96.825	ENSSPUG00000014590	-	74	96.825	Sphenodon_punctatus
ENSSDUG00000016283	snrpf	76	100.000	ENSSPAG00000003283	snrpf	73	100.000	Stegastes_partitus
ENSSDUG00000016283	snrpf	77	96.923	ENSSSCG00000000895	SNRPF	76	96.923	Sus_scrofa
ENSSDUG00000016283	snrpf	57	97.917	ENSTRUG00000014956	snrpf	70	97.917	Takifugu_rubripes
ENSSDUG00000016283	snrpf	77	98.462	ENSTNIG00000012672	snrpf	76	98.462	Tetraodon_nigroviridis
ENSSDUG00000016283	snrpf	51	100.000	ENSTTRG00000006070	SNRPF	50	100.000	Tursiops_truncatus
ENSSDUG00000016283	snrpf	77	96.923	ENSUAMG00000008176	-	83	96.923	Ursus_americanus
ENSSDUG00000016283	snrpf	79	86.364	ENSUAMG00000001101	-	78	86.364	Ursus_americanus
ENSSDUG00000016283	snrpf	79	86.364	ENSUMAG00000006177	-	78	86.364	Ursus_maritimus
ENSSDUG00000016283	snrpf	77	96.923	ENSUMAG00000003528	-	79	96.923	Ursus_maritimus
ENSSDUG00000016283	snrpf	77	96.923	ENSVPAG00000008712	-	76	96.923	Vicugna_pacos
ENSSDUG00000016283	snrpf	77	89.231	ENSVVUG00000023821	-	83	89.231	Vulpes_vulpes
ENSSDUG00000016283	snrpf	57	87.500	ENSXETG00000021630	snrpf	51	95.455	Xenopus_tropicalis
ENSSDUG00000016283	snrpf	75	100.000	ENSXCOG00000013860	snrpf	72	100.000	Xiphophorus_couchianus
ENSSDUG00000016283	snrpf	75	100.000	ENSXMAG00000015448	snrpf	74	100.000	Xiphophorus_maculatus