EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSDUG00000016358 (Gene tree)
Gene ID
111217109
Gene Symbol
RPA1 (1 of many)
Alias
HSSB|REPA1|RF-A|RP-A|RPA70
Full Name
replication protein A 70 kDa DNA-binding subunit-like
Gene Type
protein_coding
Species
Seriola_dumerili
Status
putative
Strand
Plus strand
Length
36612 bases
Position
chrBDQW01000040.1:3434965-3471576
Accession
111217109
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSDUP00000022462tRNA_anti-codonPF01336.251.2e-1111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSDUT00000022873RPA1 (1 of many)-2012777XM_022738827ENSSDUP00000022462680 (aa)XP_022594548UPI000BBEBAC7
Gene Model
Click here to download ENSSDUG00000016358's gene model file
Pathways
Pathway IDPathway NameSource
sdu03030DNA replicationKEGG
sdu03420Nucleotide excision repairKEGG
sdu03430Mismatch repairKEGG
sdu03440Homologous recombinationKEGG
sdu03460Fanconi anemia pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000016358's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSDUG00000016358RPA19072.374ENSSDUG00000011949rpa19272.622
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSDUG00000016358RPA18270.814ENSAPOG00000011658rpa19371.528Acanthochromis_polyacanthus
ENSSDUG00000016358RPA110079.740ENSAPOG00000019409RPA110079.740Acanthochromis_polyacanthus
ENSSDUG00000016358RPA18464.932ENSAMEG00000007706RPA18665.668Ailuropoda_melanoleuca
ENSSDUG00000016358RPA19676.911ENSACIG00000012881RPA19976.758Amphilophus_citrinellus
ENSSDUG00000016358RPA17961.312ENSACIG00000007277rpa19261.468Amphilophus_citrinellus
ENSSDUG00000016358RPA19166.598ENSAOCG00000023376rpa19372.158Amphiprion_ocellaris
ENSSDUG00000016358RPA110078.824ENSAOCG00000009003RPA110078.088Amphiprion_ocellaris
ENSSDUG00000016358RPA110080.441ENSAPEG00000019132RPA110080.294Amphiprion_percula
ENSSDUG00000016358RPA19167.008ENSAPEG00000008634rpa19372.158Amphiprion_percula
ENSSDUG00000016358RPA110081.324ENSATEG00000006443RPA110081.176Anabas_testudineus
ENSSDUG00000016358RPA17871.167ENSATEG00000022024rpa19371.296Anabas_testudineus
ENSSDUG00000016358RPA18754.019ENSAPLG00000012442RPA110046.720Anas_platyrhynchos
ENSSDUG00000016358RPA18360.265ENSACAG00000014490RPA19261.521Anolis_carolinensis
ENSSDUG00000016358RPA19754.160ENSANAG00000023456RPA19465.820Aotus_nancymaae
ENSSDUG00000016358RPA19979.087ENSACLG00000005223RPA19978.940Astatotilapia_calliptera
ENSSDUG00000016358RPA17672.603ENSACLG00000006640rpa19272.917Astatotilapia_calliptera
ENSSDUG00000016358RPA18370.787ENSAMXG00000008418rpa19971.991Astyanax_mexicanus
ENSSDUG00000016358RPA18163.946ENSBTAG00000009711RPA18964.434Bos_taurus
ENSSDUG00000016358RPA18265.158ENSCJAG00000001848RPA19952.269Callithrix_jacchus
ENSSDUG00000016358RPA19952.423ENSCAFG00000019249RPA19952.423Canis_familiaris
ENSSDUG00000016358RPA19952.423ENSCAFG00020009847RPA19952.423Canis_lupus_dingo
ENSSDUG00000016358RPA18163.719ENSCHIG00000026308RPA18964.203Capra_hircus
ENSSDUG00000016358RPA18664.853ENSTSYG00000003482-8965.589Carlito_syrichta
ENSSDUG00000016358RPA19952.493ENSCPOG00000000035RPA19952.346Cavia_porcellus
ENSSDUG00000016358RPA18252.715ENSCCAG00000010981RPA19944.217Cebus_capucinus
ENSSDUG00000016358RPA19950.073ENSCLAG00000015045-9949.486Chinchilla_lanigera
ENSSDUG00000016358RPA19953.372ENSCLAG00000005185-9952.933Chinchilla_lanigera
ENSSDUG00000016358RPA18352.489ENSCSAG00000013833RPA19944.217Chlorocebus_sabaeus
ENSSDUG00000016358RPA16465.826ENSCHOG00000009454-9966.051Choloepus_hoffmanni
ENSSDUG00000016358RPA18165.682ENSCHOG00000013540-8966.282Choloepus_hoffmanni
ENSSDUG00000016358RPA19953.598ENSCPBG00000020377RPA19954.003Chrysemys_picta_bellii
ENSSDUG00000016358RPA18849.213ENSCING00000023482-9049.885Ciona_intestinalis
ENSSDUG00000016358RPA18465.385ENSCANG00000030911RPA19365.899Colobus_angolensis_palliatus
ENSSDUG00000016358RPA19952.367ENSCGRG00001008197Rpa19952.367Cricetulus_griseus_chok1gshd
ENSSDUG00000016358RPA16464.679ENSCGRG00000000582Rpa18464.965Cricetulus_griseus_crigri
ENSSDUG00000016358RPA110066.765ENSCSEG00000012726RPA19966.509Cynoglossus_semilaevis
ENSSDUG00000016358RPA19965.010ENSCSEG00000013066rpa19269.444Cynoglossus_semilaevis
ENSSDUG00000016358RPA19674.848ENSCVAG00000013446-9674.695Cyprinodon_variegatus
ENSSDUG00000016358RPA18271.005ENSCVAG00000019431rpa19371.363Cyprinodon_variegatus
ENSSDUG00000016358RPA19569.281ENSDARG00000003938rpa19957.185Danio_rerio
ENSSDUG00000016358RPA18365.826ENSDNOG00000017218RPA18866.051Dasypus_novemcinctus
ENSSDUG00000016358RPA19362.083ENSDORG00000006199Rpa19952.199Dipodomys_ordii
ENSSDUG00000016358RPA18943.158FBgn0010173RpA-709145.814Drosophila_melanogaster
ENSSDUG00000016358RPA17364.948ENSETEG00000017608RPA18264.948Echinops_telfairi
ENSSDUG00000016358RPA18765.000ENSEASG00005009372RPA19865.509Equus_asinus_asinus
ENSSDUG00000016358RPA18565.000ENSECAG00000023886RPA18965.509Equus_caballus
ENSSDUG00000016358RPA16164.678ENSEEUG00000002186-6864.678Erinaceus_europaeus
ENSSDUG00000016358RPA16874.820ENSELUG00000006136RPA19274.820Esox_lucius
ENSSDUG00000016358RPA110057.269ENSELUG00000021071rpa19957.709Esox_lucius
ENSSDUG00000016358RPA19952.802ENSFCAG00000006306RPA19952.655Felis_catus
ENSSDUG00000016358RPA19952.123ENSFALG00000006575RPA19951.679Ficedula_albicollis
ENSSDUG00000016358RPA19952.786ENSFDAG00000007720RPA19953.372Fukomys_damarensis
ENSSDUG00000016358RPA18170.252ENSFHEG00000003580rpa19070.370Fundulus_heteroclitus
ENSSDUG00000016358RPA19166.247ENSGMOG00000010382rpa19966.596Gadus_morhua
ENSSDUG00000016358RPA19953.010ENSGALG00000003072RPA19951.982Gallus_gallus
ENSSDUG00000016358RPA19963.600ENSGAFG00000012916rpa19970.370Gambusia_affinis
ENSSDUG00000016358RPA19975.847ENSGAFG00000020953RPA19975.994Gambusia_affinis
ENSSDUG00000016358RPA18171.689ENSGACG00000010856rpa19768.113Gasterosteus_aculeatus
ENSSDUG00000016358RPA19953.304ENSGAGG00000013611RPA19952.778Gopherus_agassizii
ENSSDUG00000016358RPA18765.079ENSGGOG00000014186RPA19465.589Gorilla_gorilla
ENSSDUG00000016358RPA19172.374ENSHBUG00000017773rpa19272.685Haplochromis_burtoni
ENSSDUG00000016358RPA18276.697ENSHBUG00000009348RPA19877.419Haplochromis_burtoni
ENSSDUG00000016358RPA18365.982ENSHGLG00000008846RPA110053.226Heterocephalus_glaber_female
ENSSDUG00000016358RPA18256.293ENSHGLG00100002005-8956.481Heterocephalus_glaber_male
ENSSDUG00000016358RPA19949.853ENSHGLG00100000799-9949.267Heterocephalus_glaber_male
ENSSDUG00000016358RPA18365.982ENSHGLG00100017755-10053.226Heterocephalus_glaber_male
ENSSDUG00000016358RPA19263.946ENSHCOG00000001401rpa19953.116Hippocampus_comes
ENSSDUG00000016358RPA18954.967ENSHCOG00000000351RPA19557.547Hippocampus_comes
ENSSDUG00000016358RPA19866.598ENSIPUG00000004400rpa19966.598Ictalurus_punctatus
ENSSDUG00000016358RPA19252.215ENSSTOG00000022475RPA19451.582Ictidomys_tridecemlineatus
ENSSDUG00000016358RPA18264.692ENSJJAG00000000876Rpa19852.214Jaculus_jaculus
ENSSDUG00000016358RPA18170.091ENSKMAG00000005605rpa19070.670Kryptolebias_marmoratus
ENSSDUG00000016358RPA19979.555ENSKMAG00000000234RPA19971.176Kryptolebias_marmoratus
ENSSDUG00000016358RPA18868.559ENSLBEG00000021604rpa19470.208Labrus_bergylta
ENSSDUG00000016358RPA19976.190ENSLBEG00000002281RPA19975.210Labrus_bergylta
ENSSDUG00000016358RPA17156.592ENSLACG00000007210RPA18861.149Latimeria_chalumnae
ENSSDUG00000016358RPA19663.022ENSLOCG00000006397rpa19269.977Lepisosteus_oculatus
ENSSDUG00000016358RPA19160.833ENSLAFG00000015354RPA19951.765Loxodonta_africana
ENSSDUG00000016358RPA16665.407ENSMFAG00000036138-9850.977Macaca_fascicularis
ENSSDUG00000016358RPA19356.713ENSMMUG00000002442-9161.609Macaca_mulatta
ENSSDUG00000016358RPA18264.932ENSMMUG00000011604-9952.239Macaca_mulatta
ENSSDUG00000016358RPA18064.253ENSMNEG00000031632-9852.359Macaca_nemestrina
ENSSDUG00000016358RPA19260.586ENSMNEG00000029837-9961.009Macaca_nemestrina
ENSSDUG00000016358RPA18062.217ENSMLEG00000038768-9948.955Mandrillus_leucophaeus
ENSSDUG00000016358RPA19983.358ENSMAMG00000020097RPA19983.211Mastacembelus_armatus
ENSSDUG00000016358RPA19265.235ENSMAMG00000017993rpa19670.602Mastacembelus_armatus
ENSSDUG00000016358RPA19979.087ENSMZEG00005024731RPA19978.940Maylandia_zebra
ENSSDUG00000016358RPA19172.374ENSMZEG00005007551rpa19471.734Maylandia_zebra
ENSSDUG00000016358RPA19952.226ENSMGAG00000005315RPA19851.403Meleagris_gallopavo
ENSSDUG00000016358RPA18964.908ENSMAUG00000010474Rpa19852.656Mesocricetus_auratus
ENSSDUG00000016358RPA18565.581ENSMICG00000012867RPA18965.581Microcebus_murinus
ENSSDUG00000016358RPA19263.761ENSMOCG00000013019Rpa19064.037Microtus_ochrogaster
ENSSDUG00000016358RPA19970.597ENSMMOG00000010868RPA19884.382Mola_mola
ENSSDUG00000016358RPA19956.213ENSMMOG00000014292rpa19171.065Mola_mola
ENSSDUG00000016358RPA16665.111ENSMODG00000010549RPA19952.562Monodelphis_domestica
ENSSDUG00000016358RPA110075.694ENSMALG00000001208RPA110075.139Monopterus_albus
ENSSDUG00000016358RPA18271.494ENSMALG00000011453rpa19271.562Monopterus_albus
ENSSDUG00000016358RPA19952.733MGP_CAROLIEiJ_G0016734Rpa19952.663Mus_caroli
ENSSDUG00000016358RPA19952.515ENSMUSG00000000751Rpa19952.515Mus_musculus
ENSSDUG00000016358RPA19953.176MGP_PahariEiJ_G0017871Rpa19952.959Mus_pahari
ENSSDUG00000016358RPA19952.950MGP_SPRETEiJ_G0017577Rpa19952.811Mus_spretus
ENSSDUG00000016358RPA19953.097ENSMPUG00000013119RPA19952.507Mustela_putorius_furo
ENSSDUG00000016358RPA18664.172ENSMLUG00000006113RPA19064.434Myotis_lucifugus
ENSSDUG00000016358RPA19652.824ENSNGAG00000004522Rpa19452.896Nannospalax_galili
ENSSDUG00000016358RPA17672.146ENSNBRG00000020595rpa19172.454Neolamprologus_brichardi
ENSSDUG00000016358RPA19969.837ENSNBRG00000009672RPA19770.431Neolamprologus_brichardi
ENSSDUG00000016358RPA18365.306ENSNLEG00000017149RPA19953.372Nomascus_leucogenys
ENSSDUG00000016358RPA18862.245ENSMEUG00000006714RPA19846.606Notamacropus_eugenii
ENSSDUG00000016358RPA19653.354ENSODEG00000009038RPA19653.201Octodon_degus
ENSSDUG00000016358RPA19172.146ENSONIG00000013135rpa19072.454Oreochromis_niloticus
ENSSDUG00000016358RPA19852.459ENSOANG00000010880RPA19952.012Ornithorhynchus_anatinus
ENSSDUG00000016358RPA19951.425ENSOCUG00000001504RPA19951.143Oryctolagus_cuniculus
ENSSDUG00000016358RPA18272.082ENSORLG00000004856rpa19272.158Oryzias_latipes
ENSSDUG00000016358RPA19973.206ENSORLG00000003368RPA19972.926Oryzias_latipes
ENSSDUG00000016358RPA19973.295ENSORLG00020015284RPA19973.295Oryzias_latipes_hni
ENSSDUG00000016358RPA18272.311ENSORLG00020008980rpa19272.390Oryzias_latipes_hni
ENSSDUG00000016358RPA19972.459ENSORLG00015020383RPA19972.247Oryzias_latipes_hsok
ENSSDUG00000016358RPA16481.922ENSORLG00015005867-9879.556Oryzias_latipes_hsok
ENSSDUG00000016358RPA18272.311ENSORLG00015013982rpa19272.390Oryzias_latipes_hsok
ENSSDUG00000016358RPA18269.336ENSOMEG00000004704rpa19269.606Oryzias_melastigma
ENSSDUG00000016358RPA19968.101ENSOMEG00000011040RPA19868.865Oryzias_melastigma
ENSSDUG00000016358RPA16767.416ENSOGAG00000029379-8568.932Otolemur_garnettii
ENSSDUG00000016358RPA18964.773ENSOGAG00000005581-8965.509Otolemur_garnettii
ENSSDUG00000016358RPA18163.719ENSOARG00000014479RPA18964.203Ovis_aries
ENSSDUG00000016358RPA18365.306ENSPPAG00000039680RPA19165.820Pan_paniscus
ENSSDUG00000016358RPA19952.933ENSPPRG00000011807RPA19952.639Panthera_pardus
ENSSDUG00000016358RPA19953.097ENSPTIG00000007898RPA19952.802Panthera_tigris_altaica
ENSSDUG00000016358RPA18365.079ENSPTRG00000008539RPA19953.294Pan_troglodytes
ENSSDUG00000016358RPA18364.932ENSPANG00000024592RPA19952.269Papio_anubis
ENSSDUG00000016358RPA17774.201ENSPKIG00000008053rpa19457.781Paramormyrops_kingsleyae
ENSSDUG00000016358RPA19065.227ENSPSIG00000015617RPA18965.589Pelodiscus_sinensis
ENSSDUG00000016358RPA18572.603ENSPMGG00000011589rpa19372.917Periophthalmus_magnuspinnatus
ENSSDUG00000016358RPA19579.956ENSPMGG00000000543RPA19965.984Periophthalmus_magnuspinnatus
ENSSDUG00000016358RPA19952.733ENSPEMG00000021061Rpa18764.965Peromyscus_maniculatus_bairdii
ENSSDUG00000016358RPA18365.333ENSPCIG00000019049RPA19953.148Phascolarctos_cinereus
ENSSDUG00000016358RPA19263.600ENSPFOG00000003987rpa19270.370Poecilia_formosa
ENSSDUG00000016358RPA19576.043ENSPLAG00000008844-9775.734Poecilia_latipinna
ENSSDUG00000016358RPA19963.800ENSPLAG00000004984rpa19956.130Poecilia_latipinna
ENSSDUG00000016358RPA19576.198ENSPMEG00000003627-9775.889Poecilia_mexicana
ENSSDUG00000016358RPA19263.600ENSPMEG00000020602rpa19270.370Poecilia_mexicana
ENSSDUG00000016358RPA17863.861ENSPREG00000010174rpa18863.910Poecilia_reticulata
ENSSDUG00000016358RPA19977.160ENSPREG00000010119RPA110075.920Poecilia_reticulata
ENSSDUG00000016358RPA18664.920ENSPCOG00000001799RPA18965.349Propithecus_coquereli
ENSSDUG00000016358RPA19661.042ENSPVAG00000002149RPA18965.278Pteropus_vampyrus
ENSSDUG00000016358RPA19979.234ENSPNYG00000024165RPA19979.087Pundamilia_nyererei
ENSSDUG00000016358RPA19172.603ENSPNYG00000016316rpa19272.917Pundamilia_nyererei
ENSSDUG00000016358RPA18660.691ENSPNAG00000008599rpa19659.044Pygocentrus_nattereri
ENSSDUG00000016358RPA19165.207ENSRNOG00000003123Rpa18965.429Rattus_norvegicus
ENSSDUG00000016358RPA18564.932ENSRBIG00000036587RPA19952.123Rhinopithecus_bieti
ENSSDUG00000016358RPA18559.729ENSRROG00000043278RPA19948.609Rhinopithecus_roxellana
ENSSDUG00000016358RPA16735.065YAR007CRFA17036.009Saccharomyces_cerevisiae
ENSSDUG00000016358RPA17465.385ENSSBOG00000030233RPA19754.140Saimiri_boliviensis_boliviensis
ENSSDUG00000016358RPA18266.000ENSSHAG00000007969RPA19853.176Sarcophilus_harrisii
ENSSDUG00000016358RPA19171.711ENSSFOG00015005362rpa19273.441Scleropages_formosus
ENSSDUG00000016358RPA110079.118ENSSMAG00000019746RPA110078.971Scophthalmus_maximus
ENSSDUG00000016358RPA110097.664ENSSLDG00000020784RPA110097.664Seriola_lalandi_dorsalis
ENSSDUG00000016358RPA19171.918ENSSLDG00000011806rpa19972.222Seriola_lalandi_dorsalis
ENSSDUG00000016358RPA17363.636ENSSARG00000007506RPA17763.636Sorex_araneus
ENSSDUG00000016358RPA19851.343ENSSPUG00000007223RPA19951.271Sphenodon_punctatus
ENSSDUG00000016358RPA18571.461ENSSPAG00000009903rpa19271.759Stegastes_partitus
ENSSDUG00000016358RPA19972.131ENSSPAG00000011165RPA110070.294Stegastes_partitus
ENSSDUG00000016358RPA18565.533ENSSSCG00000017822RPA19466.051Sus_scrofa
ENSSDUG00000016358RPA19952.276ENSTGUG00000005775RPA19951.245Taeniopygia_guttata
ENSSDUG00000016358RPA19165.574ENSTRUG00000003616rpa19965.574Takifugu_rubripes
ENSSDUG00000016358RPA19971.429ENSTRUG00000000405RPA19970.868Takifugu_rubripes
ENSSDUG00000016358RPA19170.615ENSTNIG00000016199rpa19957.607Tetraodon_nigroviridis
ENSSDUG00000016358RPA16465.909ENSTBEG00000002709RPA17366.359Tupaia_belangeri
ENSSDUG00000016358RPA18164.027ENSTTRG00000001169RPA18964.896Tursiops_truncatus
ENSSDUG00000016358RPA17276.923ENSUAMG00000015676RPA19176.923Ursus_americanus
ENSSDUG00000016358RPA18364.626ENSUMAG00000009328RPA19565.509Ursus_maritimus
ENSSDUG00000016358RPA19159.138ENSVPAG00000009443RPA19950.963Vicugna_pacos
ENSSDUG00000016358RPA19952.507ENSVVUG00000021715RPA19952.507Vulpes_vulpes
ENSSDUG00000016358RPA18167.202ENSXETG00000013538rpa19961.431Xenopus_tropicalis
ENSSDUG00000016358RPA19668.664ENSXCOG00000009899-9968.510Xiphophorus_couchianus
ENSSDUG00000016358RPA18670.545ENSXCOG00000010068rpa19470.677Xiphophorus_couchianus
ENSSDUG00000016358RPA19973.766ENSXMAG00000010333RPA19973.343Xiphophorus_maculatus
ENSSDUG00000016358RPA19763.400ENSXMAG00000004102rpa19970.139Xiphophorus_maculatus

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