EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSDUG00000016358 (Gene tree)
Gene ID
111217109
Gene Symbol
RPA1 (1 of many)
Alias
HSSB|REPA1|RF-A|RP-A|RPA70
Full Name
replication protein A 70 kDa DNA-binding subunit-like
Gene Type
protein_coding
Species
Seriola_dumerili
Status
putative
Strand
Plus strand
Length
36612 bases
Position
chrBDQW01000040.1:3434965-3471576
Accession
111217109
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSDUP00000022462tRNA_anti-codonPF01336.251.2e-1111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSDUT00000022873RPA1 (1 of many)-2012777XM_022738827ENSSDUP00000022462680 (aa)XP_022594548UPI000BBEBAC7
Gene Model
Click here to download ENSSDUG00000016358's gene model file
Pathways
Pathway IDPathway NameSource
sdu03030DNA replicationKEGG
sdu03420Nucleotide excision repairKEGG
sdu03430Mismatch repairKEGG
sdu03440Homologous recombinationKEGG
sdu03460Fanconi anemia pathwayKEGG
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSDUG00000016358RPA19072.374ENSSDUG00000011949rpa19272.622
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSDUG00000016358RPA18270.814ENSAPOG00000011658rpa19371.528Acanthochromis_polyacanthus
ENSSDUG00000016358RPA110079.740ENSAPOG00000019409RPA110079.740Acanthochromis_polyacanthus
ENSSDUG00000016358RPA18464.932ENSAMEG00000007706RPA18665.668Ailuropoda_melanoleuca
ENSSDUG00000016358RPA19676.911ENSACIG00000012881RPA19976.758Amphilophus_citrinellus
ENSSDUG00000016358RPA17961.312ENSACIG00000007277rpa19261.468Amphilophus_citrinellus
ENSSDUG00000016358RPA19166.598ENSAOCG00000023376rpa19372.158Amphiprion_ocellaris
ENSSDUG00000016358RPA110078.824ENSAOCG00000009003RPA110078.088Amphiprion_ocellaris
ENSSDUG00000016358RPA110080.441ENSAPEG00000019132RPA110080.294Amphiprion_percula
ENSSDUG00000016358RPA19167.008ENSAPEG00000008634rpa19372.158Amphiprion_percula
ENSSDUG00000016358RPA110081.324ENSATEG00000006443RPA110081.176Anabas_testudineus
ENSSDUG00000016358RPA17871.167ENSATEG00000022024rpa19371.296Anabas_testudineus
ENSSDUG00000016358RPA18754.019ENSAPLG00000012442RPA110046.720Anas_platyrhynchos
ENSSDUG00000016358RPA18360.265ENSACAG00000014490RPA19261.521Anolis_carolinensis
ENSSDUG00000016358RPA19754.160ENSANAG00000023456RPA19465.820Aotus_nancymaae
ENSSDUG00000016358RPA19979.087ENSACLG00000005223RPA19978.940Astatotilapia_calliptera
ENSSDUG00000016358RPA17672.603ENSACLG00000006640rpa19272.917Astatotilapia_calliptera
ENSSDUG00000016358RPA18370.787ENSAMXG00000008418rpa19971.991Astyanax_mexicanus
ENSSDUG00000016358RPA18163.946ENSBTAG00000009711RPA18964.434Bos_taurus
ENSSDUG00000016358RPA18265.158ENSCJAG00000001848RPA19952.269Callithrix_jacchus
ENSSDUG00000016358RPA19952.423ENSCAFG00000019249RPA19952.423Canis_familiaris
ENSSDUG00000016358RPA19952.423ENSCAFG00020009847RPA19952.423Canis_lupus_dingo
ENSSDUG00000016358RPA18163.719ENSCHIG00000026308RPA18964.203Capra_hircus
ENSSDUG00000016358RPA18664.853ENSTSYG00000003482-8965.589Carlito_syrichta
ENSSDUG00000016358RPA19952.493ENSCPOG00000000035RPA19952.346Cavia_porcellus
ENSSDUG00000016358RPA18252.715ENSCCAG00000010981RPA19944.217Cebus_capucinus
ENSSDUG00000016358RPA19950.073ENSCLAG00000015045-9949.486Chinchilla_lanigera
ENSSDUG00000016358RPA19953.372ENSCLAG00000005185-9952.933Chinchilla_lanigera
ENSSDUG00000016358RPA18352.489ENSCSAG00000013833RPA19944.217Chlorocebus_sabaeus
ENSSDUG00000016358RPA16465.826ENSCHOG00000009454-9966.051Choloepus_hoffmanni
ENSSDUG00000016358RPA18165.682ENSCHOG00000013540-8966.282Choloepus_hoffmanni
ENSSDUG00000016358RPA19953.598ENSCPBG00000020377RPA19954.003Chrysemys_picta_bellii
ENSSDUG00000016358RPA18849.213ENSCING00000023482-9049.885Ciona_intestinalis
ENSSDUG00000016358RPA18465.385ENSCANG00000030911RPA19365.899Colobus_angolensis_palliatus
ENSSDUG00000016358RPA19952.367ENSCGRG00001008197Rpa19952.367Cricetulus_griseus_chok1gshd
ENSSDUG00000016358RPA16464.679ENSCGRG00000000582Rpa18464.965Cricetulus_griseus_crigri
ENSSDUG00000016358RPA110066.765ENSCSEG00000012726RPA19966.509Cynoglossus_semilaevis
ENSSDUG00000016358RPA19965.010ENSCSEG00000013066rpa19269.444Cynoglossus_semilaevis
ENSSDUG00000016358RPA19674.848ENSCVAG00000013446-9674.695Cyprinodon_variegatus
ENSSDUG00000016358RPA18271.005ENSCVAG00000019431rpa19371.363Cyprinodon_variegatus
ENSSDUG00000016358RPA19569.281ENSDARG00000003938rpa19957.185Danio_rerio
ENSSDUG00000016358RPA18365.826ENSDNOG00000017218RPA18866.051Dasypus_novemcinctus
ENSSDUG00000016358RPA19362.083ENSDORG00000006199Rpa19952.199Dipodomys_ordii
ENSSDUG00000016358RPA18943.158FBgn0010173RpA-709145.814Drosophila_melanogaster
ENSSDUG00000016358RPA17364.948ENSETEG00000017608RPA18264.948Echinops_telfairi
ENSSDUG00000016358RPA18765.000ENSEASG00005009372RPA19865.509Equus_asinus_asinus
ENSSDUG00000016358RPA18565.000ENSECAG00000023886RPA18965.509Equus_caballus
ENSSDUG00000016358RPA16164.678ENSEEUG00000002186-6864.678Erinaceus_europaeus
ENSSDUG00000016358RPA16874.820ENSELUG00000006136RPA19274.820Esox_lucius
ENSSDUG00000016358RPA110057.269ENSELUG00000021071rpa19957.709Esox_lucius
ENSSDUG00000016358RPA19952.802ENSFCAG00000006306RPA19952.655Felis_catus
ENSSDUG00000016358RPA19952.123ENSFALG00000006575RPA19951.679Ficedula_albicollis
ENSSDUG00000016358RPA19952.786ENSFDAG00000007720RPA19953.372Fukomys_damarensis
ENSSDUG00000016358RPA18170.252ENSFHEG00000003580rpa19070.370Fundulus_heteroclitus
ENSSDUG00000016358RPA19166.247ENSGMOG00000010382rpa19966.596Gadus_morhua
ENSSDUG00000016358RPA19953.010ENSGALG00000003072RPA19951.982Gallus_gallus
ENSSDUG00000016358RPA19963.600ENSGAFG00000012916rpa19970.370Gambusia_affinis
ENSSDUG00000016358RPA19975.847ENSGAFG00000020953RPA19975.994Gambusia_affinis
ENSSDUG00000016358RPA18171.689ENSGACG00000010856rpa19768.113Gasterosteus_aculeatus
ENSSDUG00000016358RPA19953.304ENSGAGG00000013611RPA19952.778Gopherus_agassizii
ENSSDUG00000016358RPA18765.079ENSGGOG00000014186RPA19465.589Gorilla_gorilla
ENSSDUG00000016358RPA19172.374ENSHBUG00000017773rpa19272.685Haplochromis_burtoni
ENSSDUG00000016358RPA18276.697ENSHBUG00000009348RPA19877.419Haplochromis_burtoni
ENSSDUG00000016358RPA18365.982ENSHGLG00000008846RPA110053.226Heterocephalus_glaber_female
ENSSDUG00000016358RPA18256.293ENSHGLG00100002005-8956.481Heterocephalus_glaber_male
ENSSDUG00000016358RPA19949.853ENSHGLG00100000799-9949.267Heterocephalus_glaber_male
ENSSDUG00000016358RPA18365.982ENSHGLG00100017755-10053.226Heterocephalus_glaber_male
ENSSDUG00000016358RPA19263.946ENSHCOG00000001401rpa19953.116Hippocampus_comes
ENSSDUG00000016358RPA18954.967ENSHCOG00000000351RPA19557.547Hippocampus_comes
ENSSDUG00000016358RPA19866.598ENSIPUG00000004400rpa19966.598Ictalurus_punctatus
ENSSDUG00000016358RPA19252.215ENSSTOG00000022475RPA19451.582Ictidomys_tridecemlineatus
ENSSDUG00000016358RPA18264.692ENSJJAG00000000876Rpa19852.214Jaculus_jaculus
ENSSDUG00000016358RPA18170.091ENSKMAG00000005605rpa19070.670Kryptolebias_marmoratus
ENSSDUG00000016358RPA19979.555ENSKMAG00000000234RPA19971.176Kryptolebias_marmoratus
ENSSDUG00000016358RPA18868.559ENSLBEG00000021604rpa19470.208Labrus_bergylta
ENSSDUG00000016358RPA19976.190ENSLBEG00000002281RPA19975.210Labrus_bergylta
ENSSDUG00000016358RPA17156.592ENSLACG00000007210RPA18861.149Latimeria_chalumnae
ENSSDUG00000016358RPA19663.022ENSLOCG00000006397rpa19269.977Lepisosteus_oculatus
ENSSDUG00000016358RPA19160.833ENSLAFG00000015354RPA19951.765Loxodonta_africana
ENSSDUG00000016358RPA16665.407ENSMFAG00000036138-9850.977Macaca_fascicularis
ENSSDUG00000016358RPA19356.713ENSMMUG00000002442-9161.609Macaca_mulatta
ENSSDUG00000016358RPA18264.932ENSMMUG00000011604-9952.239Macaca_mulatta
ENSSDUG00000016358RPA18064.253ENSMNEG00000031632-9852.359Macaca_nemestrina
ENSSDUG00000016358RPA19260.586ENSMNEG00000029837-9961.009Macaca_nemestrina
ENSSDUG00000016358RPA18062.217ENSMLEG00000038768-9948.955Mandrillus_leucophaeus
ENSSDUG00000016358RPA19983.358ENSMAMG00000020097RPA19983.211Mastacembelus_armatus
ENSSDUG00000016358RPA19265.235ENSMAMG00000017993rpa19670.602Mastacembelus_armatus
ENSSDUG00000016358RPA19979.087ENSMZEG00005024731RPA19978.940Maylandia_zebra
ENSSDUG00000016358RPA19172.374ENSMZEG00005007551rpa19471.734Maylandia_zebra
ENSSDUG00000016358RPA19952.226ENSMGAG00000005315RPA19851.403Meleagris_gallopavo
ENSSDUG00000016358RPA18964.908ENSMAUG00000010474Rpa19852.656Mesocricetus_auratus
ENSSDUG00000016358RPA18565.581ENSMICG00000012867RPA18965.581Microcebus_murinus
ENSSDUG00000016358RPA19263.761ENSMOCG00000013019Rpa19064.037Microtus_ochrogaster
ENSSDUG00000016358RPA19970.597ENSMMOG00000010868RPA19884.382Mola_mola
ENSSDUG00000016358RPA19956.213ENSMMOG00000014292rpa19171.065Mola_mola
ENSSDUG00000016358RPA16665.111ENSMODG00000010549RPA19952.562Monodelphis_domestica
ENSSDUG00000016358RPA110075.694ENSMALG00000001208RPA110075.139Monopterus_albus
ENSSDUG00000016358RPA18271.494ENSMALG00000011453rpa19271.562Monopterus_albus
ENSSDUG00000016358RPA19952.733MGP_CAROLIEiJ_G0016734Rpa19952.663Mus_caroli
ENSSDUG00000016358RPA19952.515ENSMUSG00000000751Rpa19952.515Mus_musculus
ENSSDUG00000016358RPA19953.176MGP_PahariEiJ_G0017871Rpa19952.959Mus_pahari
ENSSDUG00000016358RPA19952.950MGP_SPRETEiJ_G0017577Rpa19952.811Mus_spretus
ENSSDUG00000016358RPA19953.097ENSMPUG00000013119RPA19952.507Mustela_putorius_furo
ENSSDUG00000016358RPA18664.172ENSMLUG00000006113RPA19064.434Myotis_lucifugus
ENSSDUG00000016358RPA19652.824ENSNGAG00000004522Rpa19452.896Nannospalax_galili
ENSSDUG00000016358RPA17672.146ENSNBRG00000020595rpa19172.454Neolamprologus_brichardi
ENSSDUG00000016358RPA19969.837ENSNBRG00000009672RPA19770.431Neolamprologus_brichardi
ENSSDUG00000016358RPA18365.306ENSNLEG00000017149RPA19953.372Nomascus_leucogenys
ENSSDUG00000016358RPA18862.245ENSMEUG00000006714RPA19846.606Notamacropus_eugenii
ENSSDUG00000016358RPA19653.354ENSODEG00000009038RPA19653.201Octodon_degus
ENSSDUG00000016358RPA19172.146ENSONIG00000013135rpa19072.454Oreochromis_niloticus
ENSSDUG00000016358RPA19852.459ENSOANG00000010880RPA19952.012Ornithorhynchus_anatinus
ENSSDUG00000016358RPA19951.425ENSOCUG00000001504RPA19951.143Oryctolagus_cuniculus
ENSSDUG00000016358RPA18272.082ENSORLG00000004856rpa19272.158Oryzias_latipes
ENSSDUG00000016358RPA19973.206ENSORLG00000003368RPA19972.926Oryzias_latipes
ENSSDUG00000016358RPA19973.295ENSORLG00020015284RPA19973.295Oryzias_latipes_hni
ENSSDUG00000016358RPA18272.311ENSORLG00020008980rpa19272.390Oryzias_latipes_hni
ENSSDUG00000016358RPA19972.459ENSORLG00015020383RPA19972.247Oryzias_latipes_hsok
ENSSDUG00000016358RPA16481.922ENSORLG00015005867-9879.556Oryzias_latipes_hsok
ENSSDUG00000016358RPA18272.311ENSORLG00015013982rpa19272.390Oryzias_latipes_hsok
ENSSDUG00000016358RPA18269.336ENSOMEG00000004704rpa19269.606Oryzias_melastigma
ENSSDUG00000016358RPA19968.101ENSOMEG00000011040RPA19868.865Oryzias_melastigma
ENSSDUG00000016358RPA16767.416ENSOGAG00000029379-8568.932Otolemur_garnettii
ENSSDUG00000016358RPA18964.773ENSOGAG00000005581-8965.509Otolemur_garnettii
ENSSDUG00000016358RPA18163.719ENSOARG00000014479RPA18964.203Ovis_aries
ENSSDUG00000016358RPA18365.306ENSPPAG00000039680RPA19165.820Pan_paniscus
ENSSDUG00000016358RPA19952.933ENSPPRG00000011807RPA19952.639Panthera_pardus
ENSSDUG00000016358RPA19953.097ENSPTIG00000007898RPA19952.802Panthera_tigris_altaica
ENSSDUG00000016358RPA18365.079ENSPTRG00000008539RPA19953.294Pan_troglodytes
ENSSDUG00000016358RPA18364.932ENSPANG00000024592RPA19952.269Papio_anubis
ENSSDUG00000016358RPA17774.201ENSPKIG00000008053rpa19457.781Paramormyrops_kingsleyae
ENSSDUG00000016358RPA19065.227ENSPSIG00000015617RPA18965.589Pelodiscus_sinensis
ENSSDUG00000016358RPA18572.603ENSPMGG00000011589rpa19372.917Periophthalmus_magnuspinnatus
ENSSDUG00000016358RPA19579.956ENSPMGG00000000543RPA19965.984Periophthalmus_magnuspinnatus
ENSSDUG00000016358RPA19952.733ENSPEMG00000021061Rpa18764.965Peromyscus_maniculatus_bairdii
ENSSDUG00000016358RPA18365.333ENSPCIG00000019049RPA19953.148Phascolarctos_cinereus
ENSSDUG00000016358RPA19263.600ENSPFOG00000003987rpa19270.370Poecilia_formosa
ENSSDUG00000016358RPA19576.043ENSPLAG00000008844-9775.734Poecilia_latipinna
ENSSDUG00000016358RPA19963.800ENSPLAG00000004984rpa19956.130Poecilia_latipinna
ENSSDUG00000016358RPA19576.198ENSPMEG00000003627-9775.889Poecilia_mexicana
ENSSDUG00000016358RPA19263.600ENSPMEG00000020602rpa19270.370Poecilia_mexicana
ENSSDUG00000016358RPA17863.861ENSPREG00000010174rpa18863.910Poecilia_reticulata
ENSSDUG00000016358RPA19977.160ENSPREG00000010119RPA110075.920Poecilia_reticulata
ENSSDUG00000016358RPA18664.920ENSPCOG00000001799RPA18965.349Propithecus_coquereli
ENSSDUG00000016358RPA19661.042ENSPVAG00000002149RPA18965.278Pteropus_vampyrus
ENSSDUG00000016358RPA19979.234ENSPNYG00000024165RPA19979.087Pundamilia_nyererei
ENSSDUG00000016358RPA19172.603ENSPNYG00000016316rpa19272.917Pundamilia_nyererei
ENSSDUG00000016358RPA18660.691ENSPNAG00000008599rpa19659.044Pygocentrus_nattereri
ENSSDUG00000016358RPA19165.207ENSRNOG00000003123Rpa18965.429Rattus_norvegicus
ENSSDUG00000016358RPA18564.932ENSRBIG00000036587RPA19952.123Rhinopithecus_bieti
ENSSDUG00000016358RPA18559.729ENSRROG00000043278RPA19948.609Rhinopithecus_roxellana
ENSSDUG00000016358RPA16735.065YAR007CRFA17036.009Saccharomyces_cerevisiae
ENSSDUG00000016358RPA17465.385ENSSBOG00000030233RPA19754.140Saimiri_boliviensis_boliviensis
ENSSDUG00000016358RPA18266.000ENSSHAG00000007969RPA19853.176Sarcophilus_harrisii
ENSSDUG00000016358RPA19171.711ENSSFOG00015005362rpa19273.441Scleropages_formosus
ENSSDUG00000016358RPA110079.118ENSSMAG00000019746RPA110078.971Scophthalmus_maximus
ENSSDUG00000016358RPA110097.664ENSSLDG00000020784RPA110097.664Seriola_lalandi_dorsalis
ENSSDUG00000016358RPA19171.918ENSSLDG00000011806rpa19972.222Seriola_lalandi_dorsalis
ENSSDUG00000016358RPA17363.636ENSSARG00000007506RPA17763.636Sorex_araneus
ENSSDUG00000016358RPA19851.343ENSSPUG00000007223RPA19951.271Sphenodon_punctatus
ENSSDUG00000016358RPA18571.461ENSSPAG00000009903rpa19271.759Stegastes_partitus
ENSSDUG00000016358RPA19972.131ENSSPAG00000011165RPA110070.294Stegastes_partitus
ENSSDUG00000016358RPA18565.533ENSSSCG00000017822RPA19466.051Sus_scrofa
ENSSDUG00000016358RPA19952.276ENSTGUG00000005775RPA19951.245Taeniopygia_guttata
ENSSDUG00000016358RPA19165.574ENSTRUG00000003616rpa19965.574Takifugu_rubripes
ENSSDUG00000016358RPA19971.429ENSTRUG00000000405RPA19970.868Takifugu_rubripes
ENSSDUG00000016358RPA19170.615ENSTNIG00000016199rpa19957.607Tetraodon_nigroviridis
ENSSDUG00000016358RPA16465.909ENSTBEG00000002709RPA17366.359Tupaia_belangeri
ENSSDUG00000016358RPA18164.027ENSTTRG00000001169RPA18964.896Tursiops_truncatus
ENSSDUG00000016358RPA17276.923ENSUAMG00000015676RPA19176.923Ursus_americanus
ENSSDUG00000016358RPA18364.626ENSUMAG00000009328RPA19565.509Ursus_maritimus
ENSSDUG00000016358RPA19159.138ENSVPAG00000009443RPA19950.963Vicugna_pacos
ENSSDUG00000016358RPA19952.507ENSVVUG00000021715RPA19952.507Vulpes_vulpes
ENSSDUG00000016358RPA18167.202ENSXETG00000013538rpa19961.431Xenopus_tropicalis
ENSSDUG00000016358RPA19668.664ENSXCOG00000009899-9968.510Xiphophorus_couchianus
ENSSDUG00000016358RPA18670.545ENSXCOG00000010068rpa19470.677Xiphophorus_couchianus
ENSSDUG00000016358RPA19973.766ENSXMAG00000010333RPA19973.343Xiphophorus_maculatus
ENSSDUG00000016358RPA19763.400ENSXMAG00000004102rpa19970.139Xiphophorus_maculatus

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