EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000016377 (Gene tree)
Gene ID: 111224763
Gene Symbol: apex1
Alias: hm:zehn1532|wu:fc13d11|zap1|zgc:66204
Full Name: apurinic/apyrimidinic endodeoxyribonuclease 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 1725 bases
Position: chrBDQW01000138.1:16532522-16534246
Accession: 111224763
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000022493	Exo_endo_phos	PF03372.23	1.8e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000022905	-	936	XM_022749390	ENSSDUP00000022493	311 (aa)	XP_022605111	-

Gene Model

Click here to download ENSSDUG00000016377's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03410	Base excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000016377's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000016377	apex1	99	65.190	ENSG00000100823	APEX1	88	69.534	Homo_sapiens
ENSSDUG00000016377	apex1	99	88.065	ENSAPOG00000017002	apex1	100	88.065	Acanthochromis_polyacanthus
ENSSDUG00000016377	apex1	99	65.190	ENSAMEG00000005418	APEX1	99	65.190	Ailuropoda_melanoleuca
ENSSDUG00000016377	apex1	89	91.336	ENSACIG00000010653	apex1	95	91.429	Amphilophus_citrinellus
ENSSDUG00000016377	apex1	99	88.387	ENSAOCG00000009649	apex1	100	88.387	Amphiprion_ocellaris
ENSSDUG00000016377	apex1	99	88.710	ENSAPEG00000021453	apex1	100	88.710	Amphiprion_percula
ENSSDUG00000016377	apex1	99	90.291	ENSATEG00000002883	apex1	97	90.291	Anabas_testudineus
ENSSDUG00000016377	apex1	99	66.981	ENSACAG00000008099	APEX1	99	66.984	Anolis_carolinensis
ENSSDUG00000016377	apex1	80	30.592	ENSACAG00000011201	APEX2	59	30.233	Anolis_carolinensis
ENSSDUG00000016377	apex1	99	65.823	ENSANAG00000030117	APEX1	99	65.823	Aotus_nancymaae
ENSSDUG00000016377	apex1	99	90.323	ENSACLG00000018441	apex1	100	90.323	Astatotilapia_calliptera
ENSSDUG00000016377	apex1	99	87.097	ENSAMXG00000034699	apex1	99	87.097	Astyanax_mexicanus
ENSSDUG00000016377	apex1	99	65.190	ENSBTAG00000002745	APEX1	99	65.190	Bos_taurus
ENSSDUG00000016377	apex1	91	43.007	WBGene00001372	exo-3	92	43.820	Caenorhabditis_elegans
ENSSDUG00000016377	apex1	99	65.823	ENSCJAG00000009726	APEX1	99	65.823	Callithrix_jacchus
ENSSDUG00000016377	apex1	99	65.506	ENSCAFG00000032033	APEX1	99	65.615	Canis_familiaris
ENSSDUG00000016377	apex1	53	58.824	ENSCAFG00020023002	-	94	59.064	Canis_lupus_dingo
ENSSDUG00000016377	apex1	99	65.506	ENSCAFG00020014377	-	99	65.615	Canis_lupus_dingo
ENSSDUG00000016377	apex1	99	65.190	ENSCHIG00000007298	-	99	65.190	Capra_hircus
ENSSDUG00000016377	apex1	89	54.676	ENSCHIG00000014537	-	89	53.957	Capra_hircus
ENSSDUG00000016377	apex1	99	64.557	ENSTSYG00000034813	APEX1	99	64.557	Carlito_syrichta
ENSSDUG00000016377	apex1	85	62.774	ENSCAPG00000016235	APEX1	91	68.644	Cavia_aperea
ENSSDUG00000016377	apex1	99	65.190	ENSCPOG00000030909	APEX1	88	69.534	Cavia_porcellus
ENSSDUG00000016377	apex1	99	65.823	ENSCCAG00000033056	-	99	65.823	Cebus_capucinus
ENSSDUG00000016377	apex1	99	56.962	ENSCCAG00000031931	-	87	60.215	Cebus_capucinus
ENSSDUG00000016377	apex1	99	64.873	ENSCATG00000015580	APEX1	88	69.176	Cercocebus_atys
ENSSDUG00000016377	apex1	99	65.506	ENSCLAG00000001002	APEX1	99	65.506	Chinchilla_lanigera
ENSSDUG00000016377	apex1	99	65.190	ENSCSAG00000016685	-	88	69.534	Chlorocebus_sabaeus
ENSSDUG00000016377	apex1	99	65.190	ENSCSAG00000016670	-	88	69.534	Chlorocebus_sabaeus
ENSSDUG00000016377	apex1	99	71.203	ENSCPBG00000009567	APEX1	99	70.570	Chrysemys_picta_bellii
ENSSDUG00000016377	apex1	98	55.229	ENSCING00000008137	-	93	54.902	Ciona_intestinalis
ENSSDUG00000016377	apex1	98	48.571	ENSCSAVG00000007144	-	100	53.101	Ciona_savignyi
ENSSDUG00000016377	apex1	99	65.506	ENSCANG00000030726	APEX1	99	65.506	Colobus_angolensis_palliatus
ENSSDUG00000016377	apex1	99	64.762	ENSCGRG00001017046	Apex1	99	64.762	Cricetulus_griseus_chok1gshd
ENSSDUG00000016377	apex1	99	64.762	ENSCGRG00000008984	Apex1	99	64.762	Cricetulus_griseus_crigri
ENSSDUG00000016377	apex1	99	89.032	ENSCSEG00000017499	apex1	99	89.032	Cynoglossus_semilaevis
ENSSDUG00000016377	apex1	99	89.677	ENSCVAG00000022075	apex1	100	89.677	Cyprinodon_variegatus
ENSSDUG00000016377	apex1	99	85.113	ENSDARG00000045843	apex1	99	85.113	Danio_rerio
ENSSDUG00000016377	apex1	99	62.025	ENSDNOG00000042234	APEX1	94	62.025	Dasypus_novemcinctus
ENSSDUG00000016377	apex1	99	65.190	ENSDORG00000001616	Apex1	99	65.190	Dipodomys_ordii
ENSSDUG00000016377	apex1	99	65.190	ENSETEG00000004855	-	99	65.190	Echinops_telfairi
ENSSDUG00000016377	apex1	76	58.824	ENSEBUG00000000622	-	92	58.824	Eptatretus_burgeri
ENSSDUG00000016377	apex1	99	65.931	ENSEASG00005017489	APEX1	65	69.892	Equus_asinus_asinus
ENSSDUG00000016377	apex1	99	65.931	ENSECAG00000022325	APEX1	72	69.892	Equus_caballus
ENSSDUG00000016377	apex1	86	69.145	ENSEEUG00000012569	APEX1	93	69.145	Erinaceus_europaeus
ENSSDUG00000016377	apex1	99	83.226	ENSELUG00000021706	apex1	99	85.484	Esox_lucius
ENSSDUG00000016377	apex1	99	65.506	ENSFCAG00000030869	APEX1	99	65.506	Felis_catus
ENSSDUG00000016377	apex1	99	65.823	ENSFDAG00000006120	APEX1	99	65.823	Fukomys_damarensis
ENSSDUG00000016377	apex1	100	88.746	ENSFHEG00000009031	apex1	84	88.746	Fundulus_heteroclitus
ENSSDUG00000016377	apex1	99	75.484	ENSGMOG00000007943	apex1	99	75.484	Gadus_morhua
ENSSDUG00000016377	apex1	99	90.968	ENSGAFG00000005311	apex1	100	90.968	Gambusia_affinis
ENSSDUG00000016377	apex1	100	90.997	ENSGACG00000019497	apex1	100	90.997	Gasterosteus_aculeatus
ENSSDUG00000016377	apex1	99	70.570	ENSGAGG00000014999	APEX1	99	70.253	Gopherus_agassizii
ENSSDUG00000016377	apex1	99	64.873	ENSGGOG00000002128	APEX1	88	69.176	Gorilla_gorilla
ENSSDUG00000016377	apex1	99	90.000	ENSHBUG00000005894	apex1	100	90.000	Haplochromis_burtoni
ENSSDUG00000016377	apex1	99	65.506	ENSHGLG00000002848	APEX1	99	65.506	Heterocephalus_glaber_female
ENSSDUG00000016377	apex1	99	65.506	ENSHGLG00100017878	APEX1	99	65.506	Heterocephalus_glaber_male
ENSSDUG00000016377	apex1	99	88.103	ENSHCOG00000009961	apex1	100	88.103	Hippocampus_comes
ENSSDUG00000016377	apex1	99	84.516	ENSIPUG00000005799	apex1	99	83.172	Ictalurus_punctatus
ENSSDUG00000016377	apex1	99	65.823	ENSSTOG00000010096	APEX1	99	65.823	Ictidomys_tridecemlineatus
ENSSDUG00000016377	apex1	89	62.366	ENSJJAG00000020465	-	90	62.366	Jaculus_jaculus
ENSSDUG00000016377	apex1	99	57.278	ENSJJAG00000003660	-	88	60.573	Jaculus_jaculus
ENSSDUG00000016377	apex1	99	64.241	ENSJJAG00000012067	-	88	68.459	Jaculus_jaculus
ENSSDUG00000016377	apex1	99	90.000	ENSKMAG00000021171	apex1	100	90.000	Kryptolebias_marmoratus
ENSSDUG00000016377	apex1	99	90.323	ENSLBEG00000010248	apex1	100	90.323	Labrus_bergylta
ENSSDUG00000016377	apex1	99	73.718	ENSLACG00000008617	APEX1	99	72.436	Latimeria_chalumnae
ENSSDUG00000016377	apex1	99	77.955	ENSLOCG00000015516	apex1	99	77.955	Lepisosteus_oculatus
ENSSDUG00000016377	apex1	99	65.823	ENSLAFG00000021872	APEX1	99	65.823	Loxodonta_africana
ENSSDUG00000016377	apex1	99	64.557	ENSMFAG00000002565	APEX1	88	69.176	Macaca_fascicularis
ENSSDUG00000016377	apex1	99	64.557	ENSMMUG00000048039	APEX1	88	69.176	Macaca_mulatta
ENSSDUG00000016377	apex1	99	64.669	ENSMNEG00000036944	APEX1	88	69.176	Macaca_nemestrina
ENSSDUG00000016377	apex1	99	64.873	ENSMLEG00000042125	APEX1	88	69.176	Mandrillus_leucophaeus
ENSSDUG00000016377	apex1	100	92.605	ENSMAMG00000023526	apex1	100	92.581	Mastacembelus_armatus
ENSSDUG00000016377	apex1	99	90.323	ENSMZEG00005014187	apex1	100	90.323	Maylandia_zebra
ENSSDUG00000016377	apex1	99	64.762	ENSMAUG00000013994	Apex1	88	68.459	Mesocricetus_auratus
ENSSDUG00000016377	apex1	99	64.557	ENSMICG00000043554	APEX1	99	64.557	Microcebus_murinus
ENSSDUG00000016377	apex1	99	66.032	ENSMOCG00000013721	Apex1	99	66.032	Microtus_ochrogaster
ENSSDUG00000016377	apex1	100	86.538	ENSMMOG00000010031	apex1	97	86.538	Mola_mola
ENSSDUG00000016377	apex1	89	68.459	ENSMODG00000007125	APEX1	99	63.522	Monodelphis_domestica
ENSSDUG00000016377	apex1	90	85.714	ENSMALG00000011699	apex1	75	85.714	Monopterus_albus
ENSSDUG00000016377	apex1	99	66.879	MGP_CAROLIEiJ_G0019209	Apex1	99	66.879	Mus_caroli
ENSSDUG00000016377	apex1	99	66.667	ENSMUSG00000035960	Apex1	99	66.667	Mus_musculus
ENSSDUG00000016377	apex1	99	66.032	MGP_PahariEiJ_G0030232	Apex1	99	66.032	Mus_pahari
ENSSDUG00000016377	apex1	99	66.667	MGP_SPRETEiJ_G0020101	Apex1	99	66.667	Mus_spretus
ENSSDUG00000016377	apex1	99	64.577	ENSMLUG00000028957	APEX1	87	68.817	Myotis_lucifugus
ENSSDUG00000016377	apex1	99	64.557	ENSNGAG00000002725	-	99	64.557	Nannospalax_galili
ENSSDUG00000016377	apex1	87	51.625	ENSNGAG00000021748	-	85	51.625	Nannospalax_galili
ENSSDUG00000016377	apex1	100	90.354	ENSNBRG00000005334	apex1	92	90.354	Neolamprologus_brichardi
ENSSDUG00000016377	apex1	99	65.916	ENSNLEG00000010839	APEX1	99	64.873	Nomascus_leucogenys
ENSSDUG00000016377	apex1	99	65.287	ENSMEUG00000014519	APEX1	99	64.856	Notamacropus_eugenii
ENSSDUG00000016377	apex1	99	65.506	ENSOPRG00000014029	APEX1	99	65.506	Ochotona_princeps
ENSSDUG00000016377	apex1	99	51.242	ENSODEG00000006583	-	87	54.035	Octodon_degus
ENSSDUG00000016377	apex1	99	65.506	ENSODEG00000001703	-	99	65.506	Octodon_degus
ENSSDUG00000016377	apex1	95	51.689	ENSODEG00000004777	-	83	56.917	Octodon_degus
ENSSDUG00000016377	apex1	99	90.323	ENSONIG00000012089	apex1	100	90.323	Oreochromis_niloticus
ENSSDUG00000016377	apex1	91	67.368	ENSOANG00000008836	APEX1	68	68.727	Ornithorhynchus_anatinus
ENSSDUG00000016377	apex1	99	65.823	ENSOCUG00000005022	APEX1	99	65.823	Oryctolagus_cuniculus
ENSSDUG00000016377	apex1	99	91.318	ENSORLG00000012378	apex1	100	91.318	Oryzias_latipes
ENSSDUG00000016377	apex1	99	91.318	ENSORLG00020021371	apex1	100	91.318	Oryzias_latipes_hni
ENSSDUG00000016377	apex1	99	91.318	ENSORLG00015020089	apex1	100	91.318	Oryzias_latipes_hsok
ENSSDUG00000016377	apex1	99	91.961	ENSOMEG00000018876	apex1	100	91.961	Oryzias_melastigma
ENSSDUG00000016377	apex1	89	62.724	ENSOGAG00000029355	-	89	62.724	Otolemur_garnettii
ENSSDUG00000016377	apex1	99	66.139	ENSOGAG00000013335	-	88	70.968	Otolemur_garnettii
ENSSDUG00000016377	apex1	96	62.745	ENSOARG00000001876	-	99	62.745	Ovis_aries
ENSSDUG00000016377	apex1	96	56.291	ENSOARG00000014424	-	89	57.706	Ovis_aries
ENSSDUG00000016377	apex1	99	65.190	ENSOARG00000019740	-	99	65.190	Ovis_aries
ENSSDUG00000016377	apex1	99	66.238	ENSPPAG00000038760	APEX1	89	69.534	Pan_paniscus
ENSSDUG00000016377	apex1	99	65.823	ENSPPRG00000011794	APEX1	99	65.823	Panthera_pardus
ENSSDUG00000016377	apex1	99	65.506	ENSPTIG00000014829	APEX1	99	65.506	Panthera_tigris_altaica
ENSSDUG00000016377	apex1	99	66.238	ENSPTRG00000006093	APEX1	89	69.534	Pan_troglodytes
ENSSDUG00000016377	apex1	99	64.873	ENSPANG00000022757	APEX1	88	69.176	Papio_anubis
ENSSDUG00000016377	apex1	89	86.957	ENSPKIG00000003504	apex1	99	84.615	Paramormyrops_kingsleyae
ENSSDUG00000016377	apex1	86	76.952	ENSPMGG00000016596	apex1	79	76.952	Periophthalmus_magnuspinnatus
ENSSDUG00000016377	apex1	99	65.714	ENSPEMG00000019097	Apex1	99	65.714	Peromyscus_maniculatus_bairdii
ENSSDUG00000016377	apex1	93	71.134	ENSPMAG00000007275	-	95	72.043	Petromyzon_marinus
ENSSDUG00000016377	apex1	89	68.100	ENSPCIG00000023274	APEX1	87	68.100	Phascolarctos_cinereus
ENSSDUG00000016377	apex1	99	91.290	ENSPFOG00000004178	apex1	100	91.290	Poecilia_formosa
ENSSDUG00000016377	apex1	99	90.968	ENSPLAG00000012779	apex1	100	90.968	Poecilia_latipinna
ENSSDUG00000016377	apex1	99	91.290	ENSPMEG00000019623	apex1	100	91.290	Poecilia_mexicana
ENSSDUG00000016377	apex1	100	90.675	ENSPREG00000014298	apex1	100	90.675	Poecilia_reticulata
ENSSDUG00000016377	apex1	99	64.557	ENSPPYG00000005565	APEX1	88	69.176	Pongo_abelii
ENSSDUG00000016377	apex1	99	63.608	ENSPCAG00000010376	APEX1	99	63.608	Procavia_capensis
ENSSDUG00000016377	apex1	99	64.873	ENSPCOG00000021564	APEX1	99	64.873	Propithecus_coquereli
ENSSDUG00000016377	apex1	99	63.836	ENSPVAG00000010736	APEX1	87	69.176	Pteropus_vampyrus
ENSSDUG00000016377	apex1	99	90.645	ENSPNYG00000023940	apex1	100	90.645	Pundamilia_nyererei
ENSSDUG00000016377	apex1	92	85.315	ENSPNAG00000020897	apex1	96	85.263	Pygocentrus_nattereri
ENSSDUG00000016377	apex1	99	66.032	ENSRNOG00000009663	Apex1	99	66.032	Rattus_norvegicus
ENSSDUG00000016377	apex1	99	65.190	ENSRBIG00000038325	APEX1	87	69.534	Rhinopithecus_bieti
ENSSDUG00000016377	apex1	99	58.065	ENSSBOG00000031372	-	91	60.573	Saimiri_boliviensis_boliviensis
ENSSDUG00000016377	apex1	99	65.823	ENSSBOG00000018921	-	99	65.823	Saimiri_boliviensis_boliviensis
ENSSDUG00000016377	apex1	100	62.857	ENSSHAG00000013524	APEX1	97	62.857	Sarcophilus_harrisii
ENSSDUG00000016377	apex1	99	79.355	ENSSFOG00015001948	apex1	99	81.935	Scleropages_formosus
ENSSDUG00000016377	apex1	99	89.206	ENSSMAG00000013348	apex1	100	89.841	Scophthalmus_maximus
ENSSDUG00000016377	apex1	99	98.387	ENSSLDG00000023005	apex1	100	98.387	Seriola_lalandi_dorsalis
ENSSDUG00000016377	apex1	90	73.571	ENSSPUG00000000531	APEX1	94	73.477	Sphenodon_punctatus
ENSSDUG00000016377	apex1	99	87.097	ENSSPAG00000000458	apex1	100	87.097	Stegastes_partitus
ENSSDUG00000016377	apex1	99	65.506	ENSSSCG00000040060	-	99	65.506	Sus_scrofa
ENSSDUG00000016377	apex1	95	38.614	ENSSSCG00000039705	-	89	40.072	Sus_scrofa
ENSSDUG00000016377	apex1	76	57.447	ENSTGUG00000014378	APEX1	100	57.447	Taeniopygia_guttata
ENSSDUG00000016377	apex1	100	82.803	ENSTRUG00000004268	apex1	95	84.076	Takifugu_rubripes
ENSSDUG00000016377	apex1	99	84.839	ENSTNIG00000005778	apex1	100	84.839	Tetraodon_nigroviridis
ENSSDUG00000016377	apex1	99	62.342	ENSTBEG00000006405	APEX1	99	62.342	Tupaia_belangeri
ENSSDUG00000016377	apex1	76	67.660	ENSTTRG00000007860	APEX1	100	67.660	Tursiops_truncatus
ENSSDUG00000016377	apex1	99	64.873	ENSUAMG00000010457	APEX1	99	64.873	Ursus_americanus
ENSSDUG00000016377	apex1	99	64.873	ENSUMAG00000009178	APEX1	99	64.873	Ursus_maritimus
ENSSDUG00000016377	apex1	76	63.830	ENSVPAG00000005083	APEX1	100	63.830	Vicugna_pacos
ENSSDUG00000016377	apex1	99	65.506	ENSVVUG00000009010	APEX1	99	65.506	Vulpes_vulpes
ENSSDUG00000016377	apex1	99	69.108	ENSXETG00000024773	apex1	99	68.790	Xenopus_tropicalis
ENSSDUG00000016377	apex1	100	91.318	ENSXCOG00000015233	apex1	100	91.318	Xiphophorus_couchianus
ENSSDUG00000016377	apex1	99	91.613	ENSXMAG00000006195	apex1	100	91.613	Xiphophorus_maculatus