EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000016412 (Gene tree)
Gene ID: 111217201
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 15228 bases
Position: chrBDQW01000040.1:3642744-3657971
Accession: 111217201
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000022545	EST1	PF10374.9	2.1e-13	1	1
ENSSDUP00000022545	EST1_DNA_bind	PF10373.9	7.4e-57	1	1
ENSSDUP00000022545	PIN_4	PF13638.6	5.7e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000022960	-	7148	XM_022738970	ENSSDUP00000022545	1661 (aa)	XP_022594691	-

Gene Model

Click here to download ENSSDUG00000016412's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000016412's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000016412	smg6	74	54.992	ENSG00000070366	SMG6	100	58.106	Homo_sapiens
ENSSDUG00000016412	smg6	100	83.154	ENSAPOG00000019448	smg6	100	83.513	Acanthochromis_polyacanthus
ENSSDUG00000016412	smg6	80	53.001	ENSAMEG00000007632	SMG6	89	52.984	Ailuropoda_melanoleuca
ENSSDUG00000016412	smg6	93	79.253	ENSACIG00000012997	smg6	100	78.930	Amphilophus_citrinellus
ENSSDUG00000016412	smg6	100	83.572	ENSAOCG00000002630	smg6	100	84.170	Amphiprion_ocellaris
ENSSDUG00000016412	smg6	100	83.274	ENSAPEG00000019101	smg6	100	83.871	Amphiprion_percula
ENSSDUG00000016412	smg6	100	82.975	ENSATEG00000006483	smg6	100	82.915	Anabas_testudineus
ENSSDUG00000016412	smg6	62	50.047	ENSACAG00000011783	SMG6	72	54.867	Anolis_carolinensis
ENSSDUG00000016412	smg6	74	55.226	ENSANAG00000035760	SMG6	83	55.269	Aotus_nancymaae
ENSSDUG00000016412	smg6	100	80.622	ENSACLG00000005288	smg6	100	81.677	Astatotilapia_calliptera
ENSSDUG00000016412	smg6	73	69.325	ENSAMXG00000017326	smg6	95	69.202	Astyanax_mexicanus
ENSSDUG00000016412	smg6	74	54.836	ENSBTAG00000000267	SMG6	89	52.984	Bos_taurus
ENSSDUG00000016412	smg6	74	55.148	ENSCJAG00000001820	SMG6	83	55.078	Callithrix_jacchus
ENSSDUG00000016412	smg6	74	55.677	ENSCAFG00000019260	SMG6	83	55.852	Canis_familiaris
ENSSDUG00000016412	smg6	74	55.677	ENSCAFG00020009770	SMG6	83	55.852	Canis_lupus_dingo
ENSSDUG00000016412	smg6	79	52.758	ENSCHIG00000021998	SMG6	89	53.182	Capra_hircus
ENSSDUG00000016412	smg6	74	54.771	ENSTSYG00000003406	SMG6	100	57.741	Carlito_syrichta
ENSSDUG00000016412	smg6	74	53.153	ENSCAPG00000016197	SMG6	81	52.834	Cavia_aperea
ENSSDUG00000016412	smg6	81	51.174	ENSCPOG00000014878	SMG6	84	59.906	Cavia_porcellus
ENSSDUG00000016412	smg6	74	54.914	ENSCCAG00000035801	SMG6	83	55.035	Cebus_capucinus
ENSSDUG00000016412	smg6	74	54.914	ENSCATG00000031956	SMG6	83	54.957	Cercocebus_atys
ENSSDUG00000016412	smg6	79	52.563	ENSCLAG00000006748	SMG6	91	52.689	Chinchilla_lanigera
ENSSDUG00000016412	smg6	74	55.148	ENSCSAG00000013800	SMG6	83	55.191	Chlorocebus_sabaeus
ENSSDUG00000016412	smg6	79	52.574	ENSCPBG00000020369	SMG6	84	53.711	Chrysemys_picta_bellii
ENSSDUG00000016412	smg6	79	52.723	ENSCANG00000031764	SMG6	100	58.470	Colobus_angolensis_palliatus
ENSSDUG00000016412	smg6	74	50.428	ENSCGRG00000007782	Smg6	90	48.653	Cricetulus_griseus_crigri
ENSSDUG00000016412	smg6	100	74.686	ENSCSEG00000012757	smg6	100	75.564	Cynoglossus_semilaevis
ENSSDUG00000016412	smg6	100	70.143	ENSCVAG00000012789	smg6	100	70.142	Cyprinodon_variegatus
ENSSDUG00000016412	smg6	100	57.754	ENSDARG00000100481	smg6	100	56.692	Danio_rerio
ENSSDUG00000016412	smg6	74	54.524	ENSDNOG00000048283	SMG6	83	54.319	Dasypus_novemcinctus
ENSSDUG00000016412	smg6	77	50.150	ENSDORG00000016614	Smg6	84	59.434	Dipodomys_ordii
ENSSDUG00000016412	smg6	72	90.000	ENSETEG00000016790	SMG6	76	90.000	Echinops_telfairi
ENSSDUG00000016412	smg6	59	47.162	ENSEBUG00000005059	smg6	63	47.070	Eptatretus_burgeri
ENSSDUG00000016412	smg6	74	55.443	ENSEASG00005009318	SMG6	83	55.442	Equus_asinus_asinus
ENSSDUG00000016412	smg6	74	55.521	ENSECAG00000006519	SMG6	83	55.521	Equus_caballus
ENSSDUG00000016412	smg6	74	46.552	ENSEEUG00000003493	SMG6	80	58.050	Erinaceus_europaeus
ENSSDUG00000016412	smg6	98	65.904	ENSELUG00000005934	smg6	99	68.755	Esox_lucius
ENSSDUG00000016412	smg6	79	53.387	ENSFCAG00000028817	SMG6	89	53.431	Felis_catus
ENSSDUG00000016412	smg6	74	55.678	ENSFALG00000006538	SMG6	73	60.146	Ficedula_albicollis
ENSSDUG00000016412	smg6	78	52.402	ENSFDAG00000015106	SMG6	84	58.491	Fukomys_damarensis
ENSSDUG00000016412	smg6	100	71.769	ENSFHEG00000013282	smg6	100	71.352	Fundulus_heteroclitus
ENSSDUG00000016412	smg6	88	54.917	ENSGALG00000003108	SMG6	96	54.475	Gallus_gallus
ENSSDUG00000016412	smg6	100	72.706	ENSGAFG00000000379	smg6	100	72.169	Gambusia_affinis
ENSSDUG00000016412	smg6	84	79.487	ENSGACG00000020521	smg6	98	81.493	Gasterosteus_aculeatus
ENSSDUG00000016412	smg6	74	54.283	ENSGAGG00000025617	SMG6	84	54.016	Gopherus_agassizii
ENSSDUG00000016412	smg6	74	54.751	ENSGGOG00000017156	SMG6	83	55.027	Gorilla_gorilla
ENSSDUG00000016412	smg6	100	80.323	ENSHBUG00000021311	smg6	100	80.562	Haplochromis_burtoni
ENSSDUG00000016412	smg6	74	55.339	ENSHGLG00000012882	SMG6	84	58.962	Heterocephalus_glaber_female
ENSSDUG00000016412	smg6	77	53.646	ENSHGLG00100017815	SMG6	84	58.962	Heterocephalus_glaber_male
ENSSDUG00000016412	smg6	64	71.588	ENSHCOG00000008761	smg6	83	72.145	Hippocampus_comes
ENSSDUG00000016412	smg6	100	54.738	ENSIPUG00000012493	smg6	100	55.187	Ictalurus_punctatus
ENSSDUG00000016412	smg6	79	52.326	ENSSTOG00000028127	SMG6	84	58.962	Ictidomys_tridecemlineatus
ENSSDUG00000016412	smg6	57	50.706	ENSJJAG00000015367	Smg6	62	56.273	Jaculus_jaculus
ENSSDUG00000016412	smg6	100	74.732	ENSKMAG00000000279	smg6	100	74.672	Kryptolebias_marmoratus
ENSSDUG00000016412	smg6	100	81.579	ENSLBEG00000002184	smg6	100	81.459	Labrus_bergylta
ENSSDUG00000016412	smg6	66	66.191	ENSLOCG00000006448	smg6	99	56.771	Lepisosteus_oculatus
ENSSDUG00000016412	smg6	74	54.503	ENSLAFG00000001261	SMG6	83	54.538	Loxodonta_africana
ENSSDUG00000016412	smg6	74	55.148	ENSMFAG00000003394	SMG6	83	55.191	Macaca_fascicularis
ENSSDUG00000016412	smg6	74	54.992	ENSMMUG00000023161	SMG6	83	55.035	Macaca_mulatta
ENSSDUG00000016412	smg6	74	52.821	ENSMNEG00000044592	SMG6	83	52.776	Macaca_nemestrina
ENSSDUG00000016412	smg6	69	59.686	ENSMLEG00000029353	SMG6	84	59.825	Mandrillus_leucophaeus
ENSSDUG00000016412	smg6	100	84.482	ENSMAMG00000020119	smg6	100	85.171	Mastacembelus_armatus
ENSSDUG00000016412	smg6	100	80.502	ENSMZEG00005024736	smg6	100	80.682	Maylandia_zebra
ENSSDUG00000016412	smg6	50	53.143	ENSMGAG00000005401	-	76	52.914	Meleagris_gallopavo
ENSSDUG00000016412	smg6	79	52.770	ENSMICG00000012913	SMG6	83	55.286	Microcebus_murinus
ENSSDUG00000016412	smg6	100	73.684	ENSMMOG00000010883	smg6	100	73.923	Mola_mola
ENSSDUG00000016412	smg6	74	55.047	ENSMODG00000010622	SMG6	74	58.938	Monodelphis_domestica
ENSSDUG00000016412	smg6	100	83.622	ENSMALG00000001106	smg6	100	83.562	Monopterus_albus
ENSSDUG00000016412	smg6	74	54.666	MGP_CAROLIEiJ_G0016729	Smg6	98	64.946	Mus_caroli
ENSSDUG00000016412	smg6	74	54.468	ENSMUSG00000038290	Smg6	97	65.460	Mus_musculus
ENSSDUG00000016412	smg6	79	51.546	MGP_PahariEiJ_G0017866	Smg6	96	66.571	Mus_pahari
ENSSDUG00000016412	smg6	79	52.520	MGP_SPRETEiJ_G0017572	Smg6	97	65.181	Mus_spretus
ENSSDUG00000016412	smg6	79	52.928	ENSMPUG00000013046	SMG6	89	52.881	Mustela_putorius_furo
ENSSDUG00000016412	smg6	79	52.693	ENSMLUG00000005739	SMG6	89	53.363	Myotis_lucifugus
ENSSDUG00000016412	smg6	74	54.170	ENSNGAG00000007287	Smg6	84	58.962	Nannospalax_galili
ENSSDUG00000016412	smg6	98	77.036	ENSNBRG00000009511	smg6	99	79.643	Neolamprologus_brichardi
ENSSDUG00000016412	smg6	74	55.304	ENSNLEG00000017171	SMG6	100	58.106	Nomascus_leucogenys
ENSSDUG00000016412	smg6	74	54.756	ENSMEUG00000015804	SMG6	85	54.766	Notamacropus_eugenii
ENSSDUG00000016412	smg6	51	62.694	ENSOPRG00000000579	SMG6	82	63.021	Ochotona_princeps
ENSSDUG00000016412	smg6	80	47.144	ENSODEG00000008038	SMG6	88	47.307	Octodon_degus
ENSSDUG00000016412	smg6	100	80.645	ENSONIG00000005594	smg6	100	83.488	Oreochromis_niloticus
ENSSDUG00000016412	smg6	74	55.027	ENSOCUG00000013018	SMG6	83	55.043	Oryctolagus_cuniculus
ENSSDUG00000016412	smg6	100	69.803	ENSORLG00000003317	smg6	100	70.339	Oryzias_latipes
ENSSDUG00000016412	smg6	100	70.030	ENSORLG00020015343	smg6	100	70.346	Oryzias_latipes_hni
ENSSDUG00000016412	smg6	100	70.227	ENSORLG00015020454	smg6	100	70.764	Oryzias_latipes_hsok
ENSSDUG00000016412	smg6	100	69.594	ENSOMEG00000010838	smg6	100	70.848	Oryzias_melastigma
ENSSDUG00000016412	smg6	74	55.070	ENSOGAG00000004483	SMG6	83	55.035	Otolemur_garnettii
ENSSDUG00000016412	smg6	79	52.830	ENSOARG00000015076	SMG6	91	53.109	Ovis_aries
ENSSDUG00000016412	smg6	79	52.578	ENSPPAG00000043296	SMG6	89	52.616	Pan_paniscus
ENSSDUG00000016412	smg6	79	53.314	ENSPPRG00000014581	SMG6	89	53.358	Panthera_pardus
ENSSDUG00000016412	smg6	79	53.314	ENSPTIG00000008925	SMG6	100	58.288	Panthera_tigris_altaica
ENSSDUG00000016412	smg6	79	52.723	ENSPTRG00000008544	SMG6	100	58.106	Pan_troglodytes
ENSSDUG00000016412	smg6	74	55.070	ENSPANG00000024588	SMG6	83	55.191	Papio_anubis
ENSSDUG00000016412	smg6	66	53.368	ENSPSIG00000006660	SMG6	81	52.865	Pelodiscus_sinensis
ENSSDUG00000016412	smg6	94	82.090	ENSPMGG00000000844	smg6	99	81.140	Periophthalmus_magnuspinnatus
ENSSDUG00000016412	smg6	74	55.159	ENSPEMG00000020707	Smg6	85	59.434	Peromyscus_maniculatus_bairdii
ENSSDUG00000016412	smg6	100	73.687	ENSPFOG00000012035	smg6	97	77.223	Poecilia_formosa
ENSSDUG00000016412	smg6	100	73.926	ENSPLAG00000017660	smg6	100	73.329	Poecilia_latipinna
ENSSDUG00000016412	smg6	100	73.807	ENSPMEG00000000258	smg6	100	73.329	Poecilia_mexicana
ENSSDUG00000016412	smg6	100	72.928	ENSPREG00000010066	smg6	100	72.510	Poecilia_reticulata
ENSSDUG00000016412	smg6	74	51.165	ENSPPYG00000007790	SMG6	83	51.204	Pongo_abelii
ENSSDUG00000016412	smg6	70	59.685	ENSPCAG00000000552	SMG6	79	59.864	Procavia_capensis
ENSSDUG00000016412	smg6	79	52.558	ENSPCOG00000020925	SMG6	83	55.008	Propithecus_coquereli
ENSSDUG00000016412	smg6	70	62.675	ENSPVAG00000002159	SMG6	78	53.222	Pteropus_vampyrus
ENSSDUG00000016412	smg6	93	77.413	ENSPNYG00000024151	smg6	99	79.682	Pundamilia_nyererei
ENSSDUG00000016412	smg6	100	53.514	ENSPNAG00000015480	smg6	100	53.842	Pygocentrus_nattereri
ENSSDUG00000016412	smg6	74	54.257	ENSRNOG00000003041	Smg6	97	65.217	Rattus_norvegicus
ENSSDUG00000016412	smg6	79	52.689	ENSRBIG00000024746	SMG6	89	52.834	Rhinopithecus_bieti
ENSSDUG00000016412	smg6	74	54.957	ENSRROG00000030423	SMG6	100	58.470	Rhinopithecus_roxellana
ENSSDUG00000016412	smg6	74	54.680	ENSSBOG00000022518	SMG6	83	53.203	Saimiri_boliviensis_boliviensis
ENSSDUG00000016412	smg6	74	55.582	ENSSHAG00000010045	SMG6	83	55.321	Sarcophilus_harrisii
ENSSDUG00000016412	smg6	100	52.018	ENSSFOG00015005436	smg6	100	52.426	Scleropages_formosus
ENSSDUG00000016412	smg6	100	85.201	ENSSMAG00000019777	smg6	100	84.901	Scophthalmus_maximus
ENSSDUG00000016412	smg6	91	98.878	ENSSLDG00000020747	smg6	98	98.878	Seriola_lalandi_dorsalis
ENSSDUG00000016412	smg6	74	54.818	ENSSPUG00000007152	SMG6	83	54.538	Sphenodon_punctatus
ENSSDUG00000016412	smg6	100	83.742	ENSSPAG00000015633	smg6	100	83.861	Stegastes_partitus
ENSSDUG00000016412	smg6	79	52.838	ENSSSCG00000017826	SMG6	89	52.967	Sus_scrofa
ENSSDUG00000016412	smg6	74	55.118	ENSTGUG00000005836	SMG6	83	55.091	Taeniopygia_guttata
ENSSDUG00000016412	smg6	95	78.125	ENSTRUG00000000358	smg6	99	78.125	Takifugu_rubripes
ENSSDUG00000016412	smg6	88	82.324	ENSTNIG00000016164	smg6	99	82.006	Tetraodon_nigroviridis
ENSSDUG00000016412	smg6	74	52.492	ENSTBEG00000011424	SMG6	83	52.418	Tupaia_belangeri
ENSSDUG00000016412	smg6	71	56.534	ENSTTRG00000001175	SMG6	80	56.330	Tursiops_truncatus
ENSSDUG00000016412	smg6	80	53.030	ENSUAMG00000025152	SMG6	91	53.018	Ursus_americanus
ENSSDUG00000016412	smg6	80	52.928	ENSUMAG00000009306	SMG6	91	52.984	Ursus_maritimus
ENSSDUG00000016412	smg6	65	95.833	ENSVPAG00000000225	SMG6	76	95.833	Vicugna_pacos
ENSSDUG00000016412	smg6	74	56.000	ENSVVUG00000021727	SMG6	84	55.276	Vulpes_vulpes
ENSSDUG00000016412	smg6	82	48.696	ENSXETG00000023799	SMG6	87	50.851	Xenopus_tropicalis
ENSSDUG00000016412	smg6	98	71.394	ENSXCOG00000009867	smg6	99	70.595	Xiphophorus_couchianus
ENSSDUG00000016412	smg6	100	73.480	ENSXMAG00000010321	smg6	100	72.868	Xiphophorus_maculatus