EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000016413 (Gene tree)
Gene ID: 111236253
Gene Symbol: rbfox1
Alias: a2bp1|zgc:103635
Full Name: RNA binding fox-1 homolog 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 75439 bases
Position: chrBDQW01000609.1:333637-409075
Accession: 111236253
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000022635	Fox-1_C	PF12414.8	1.9e-25	1	1
ENSSDUP00000022716	Fox-1_C	PF12414.8	7.3e-24	1	2
ENSSDUP00000022716	Fox-1_C	PF12414.8	7.3e-24	2	2
ENSSDUP00000022721	Fox-1_C	PF12414.8	8.6e-24	1	2
ENSSDUP00000022721	Fox-1_C	PF12414.8	8.6e-24	2	2
ENSSDUP00000022716	RRM_1	PF00076.22	1.3e-17	1	1
ENSSDUP00000022721	RRM_1	PF00076.22	1.3e-17	1	1
ENSSDUP00000022635	RRM_1	PF00076.22	1.5e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000023136	-	1059	XM_022764913	ENSSDUP00000022721	352 (aa)	XP_022620634	-
ENSSDUT00000023050	-	1095	XM_022764914	ENSSDUP00000022635	364 (aa)	XP_022620635	-
ENSSDUT00000023131	-	1056	-	ENSSDUP00000022716	351 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000016413's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000016413's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000016413	rbfox1	84	59.365	ENSSDUG00000023183	rbfox3b	100	60.000
ENSSDUG00000016413	rbfox1	70	57.732	ENSSDUG00000009511	-	78	51.777
ENSSDUG00000016413	rbfox1	69	61.268	ENSSDUG00000004292	rbfox2	72	53.209
ENSSDUG00000016413	rbfox1	84	52.663	ENSSDUG00000008705	rbfox1l	93	48.737
ENSSDUG00000016413	rbfox1	99	61.856	ENSSDUG00000015801	-	99	61.082

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000016413	rbfox1	99	79.726	ENSG00000078328	RBFOX1	98	80.000	Homo_sapiens
ENSSDUG00000016413	rbfox1	100	90.769	ENSAPOG00000003197	rbfox1	100	90.769	Acanthochromis_polyacanthus
ENSSDUG00000016413	rbfox1	63	77.130	ENSAMEG00000008605	RBFOX1	88	77.130	Ailuropoda_melanoleuca
ENSSDUG00000016413	rbfox1	64	72.119	ENSACIG00000005478	rbfox1	75	69.360	Amphilophus_citrinellus
ENSSDUG00000016413	rbfox1	79	94.810	ENSAOCG00000008283	rbfox1	99	94.810	Amphiprion_ocellaris
ENSSDUG00000016413	rbfox1	95	82.000	ENSAPEG00000010636	rbfox1	100	82.203	Amphiprion_percula
ENSSDUG00000016413	rbfox1	79	90.722	ENSATEG00000007513	rbfox1	99	91.753	Anabas_testudineus
ENSSDUG00000016413	rbfox1	100	73.804	ENSAPLG00000013263	RBFOX1	98	74.430	Anas_platyrhynchos
ENSSDUG00000016413	rbfox1	99	72.222	ENSACAG00000004013	RBFOX1	98	72.475	Anolis_carolinensis
ENSSDUG00000016413	rbfox1	99	80.274	ENSANAG00000029527	RBFOX1	97	80.163	Aotus_nancymaae
ENSSDUG00000016413	rbfox1	64	77.778	ENSAMXG00000002431	rbfox1	63	79.186	Astyanax_mexicanus
ENSSDUG00000016413	rbfox1	99	72.911	ENSBTAG00000007210	RBFOX1	98	73.418	Bos_taurus
ENSSDUG00000016413	rbfox1	99	80.055	ENSCJAG00000017351	RBFOX1	96	78.226	Callithrix_jacchus
ENSSDUG00000016413	rbfox1	99	74.046	ENSCAFG00000019082	RBFOX1	94	74.242	Canis_familiaris
ENSSDUG00000016413	rbfox1	70	71.533	ENSCAFG00020024881	RBFOX1	80	69.444	Canis_lupus_dingo
ENSSDUG00000016413	rbfox1	99	72.911	ENSCHIG00000023549	RBFOX1	98	73.418	Capra_hircus
ENSSDUG00000016413	rbfox1	99	80.000	ENSTSYG00000005334	RBFOX1	100	80.274	Carlito_syrichta
ENSSDUG00000016413	rbfox1	99	74.490	ENSCAPG00000017669	RBFOX1	100	74.745	Cavia_aperea
ENSSDUG00000016413	rbfox1	99	74.490	ENSCPOG00000011314	RBFOX1	100	73.990	Cavia_porcellus
ENSSDUG00000016413	rbfox1	99	80.274	ENSCCAG00000023031	RBFOX1	97	80.163	Cebus_capucinus
ENSSDUG00000016413	rbfox1	99	79.726	ENSCATG00000033816	RBFOX1	97	79.620	Cercocebus_atys
ENSSDUG00000016413	rbfox1	99	74.300	ENSCLAG00000012761	RBFOX1	98	74.490	Chinchilla_lanigera
ENSSDUG00000016413	rbfox1	85	70.588	ENSCSAG00000008739	RBFOX1	90	68.436	Chlorocebus_sabaeus
ENSSDUG00000016413	rbfox1	78	90.769	ENSCHOG00000012843	RBFOX1	64	90.769	Choloepus_hoffmanni
ENSSDUG00000016413	rbfox1	100	79.459	ENSCPBG00000026626	RBFOX1	98	74.177	Chrysemys_picta_bellii
ENSSDUG00000016413	rbfox1	99	79.726	ENSCANG00000033125	RBFOX1	97	79.620	Colobus_angolensis_palliatus
ENSSDUG00000016413	rbfox1	99	73.724	ENSCGRG00001013729	Rbfox1	98	73.980	Cricetulus_griseus_chok1gshd
ENSSDUG00000016413	rbfox1	99	73.724	ENSCGRG00000003272	Rbfox1	98	73.980	Cricetulus_griseus_crigri
ENSSDUG00000016413	rbfox1	94	80.270	ENSCSEG00000008840	rbfox1	100	80.000	Cynoglossus_semilaevis
ENSSDUG00000016413	rbfox1	100	79.032	ENSDARG00000014746	rbfox1	100	79.808	Danio_rerio
ENSSDUG00000016413	rbfox1	99	74.055	ENSDNOG00000043612	RBFOX1	94	74.307	Dasypus_novemcinctus
ENSSDUG00000016413	rbfox1	100	71.571	ENSDORG00000010024	Rbfox1	98	72.319	Dipodomys_ordii
ENSSDUG00000016413	rbfox1	99	63.104	ENSETEG00000003771	RBFOX1	94	63.384	Echinops_telfairi
ENSSDUG00000016413	rbfox1	100	74.474	ENSEASG00005011599	RBFOX1	98	74.177	Equus_asinus_asinus
ENSSDUG00000016413	rbfox1	100	74.474	ENSECAG00000012667	RBFOX1	90	75.000	Equus_caballus
ENSSDUG00000016413	rbfox1	56	83.249	ENSELUG00000013096	rbfox1	66	82.234	Esox_lucius
ENSSDUG00000016413	rbfox1	100	79.189	ENSFCAG00000025322	RBFOX1	89	80.328	Felis_catus
ENSSDUG00000016413	rbfox1	82	71.818	ENSFALG00000004027	RBFOX1	98	71.125	Ficedula_albicollis
ENSSDUG00000016413	rbfox1	99	74.235	ENSFDAG00000007388	RBFOX1	98	74.490	Fukomys_damarensis
ENSSDUG00000016413	rbfox1	99	74.046	ENSGALG00000034325	RBFOX1	94	74.242	Gallus_gallus
ENSSDUG00000016413	rbfox1	99	80.328	ENSGAGG00000023681	RBFOX1	100	75.263	Gopherus_agassizii
ENSSDUG00000016413	rbfox1	99	79.726	ENSGGOG00000016871	-	97	79.620	Gorilla_gorilla
ENSSDUG00000016413	rbfox1	99	74.300	ENSHGLG00000016944	RBFOX1	98	74.490	Heterocephalus_glaber_female
ENSSDUG00000016413	rbfox1	99	74.300	ENSHGLG00100003272	RBFOX1	98	74.490	Heterocephalus_glaber_male
ENSSDUG00000016413	rbfox1	84	86.901	ENSHCOG00000016419	rbfox1	91	87.580	Hippocampus_comes
ENSSDUG00000016413	rbfox1	99	84.195	ENSIPUG00000015215	rbfox1	100	80.737	Ictalurus_punctatus
ENSSDUG00000016413	rbfox1	99	74.490	ENSSTOG00000000322	RBFOX1	100	73.116	Ictidomys_tridecemlineatus
ENSSDUG00000016413	rbfox1	99	74.169	ENSJJAG00000002575	Rbfox1	98	74.615	Jaculus_jaculus
ENSSDUG00000016413	rbfox1	99	87.268	ENSLBEG00000014659	rbfox1	98	88.076	Labrus_bergylta
ENSSDUG00000016413	rbfox1	99	74.687	ENSLOCG00000006675	rbfox1	99	74.937	Lepisosteus_oculatus
ENSSDUG00000016413	rbfox1	75	77.670	ENSLAFG00000011480	RBFOX1	100	77.994	Loxodonta_africana
ENSSDUG00000016413	rbfox1	99	79.726	ENSMFAG00000036447	RBFOX1	97	79.620	Macaca_fascicularis
ENSSDUG00000016413	rbfox1	99	79.726	ENSMMUG00000003458	RBFOX1	97	79.620	Macaca_mulatta
ENSSDUG00000016413	rbfox1	99	73.537	ENSMNEG00000032034	RBFOX1	94	73.737	Macaca_nemestrina
ENSSDUG00000016413	rbfox1	99	79.726	ENSMLEG00000015382	RBFOX1	97	79.620	Mandrillus_leucophaeus
ENSSDUG00000016413	rbfox1	94	84.741	ENSMAMG00000003142	rbfox1	99	87.543	Mastacembelus_armatus
ENSSDUG00000016413	rbfox1	74	73.264	ENSMGAG00000008606	RBFOX1	98	73.264	Meleagris_gallopavo
ENSSDUG00000016413	rbfox1	96	46.995	ENSMAUG00000020570	Rbfox1	96	46.995	Mesocricetus_auratus
ENSSDUG00000016413	rbfox1	99	79.452	ENSMICG00000034286	RBFOX1	97	79.348	Microcebus_murinus
ENSSDUG00000016413	rbfox1	99	73.724	ENSMOCG00000020932	Rbfox1	99	74.160	Microtus_ochrogaster
ENSSDUG00000016413	rbfox1	84	93.197	ENSMMOG00000009716	rbfox1	86	93.197	Mola_mola
ENSSDUG00000016413	rbfox1	79	72.240	ENSMODG00000005826	RBFOX1	90	70.497	Monodelphis_domestica
ENSSDUG00000016413	rbfox1	100	85.979	ENSMALG00000003337	rbfox1	99	86.207	Monopterus_albus
ENSSDUG00000016413	rbfox1	99	73.724	MGP_CAROLIEiJ_G0020427	Rbfox1	98	73.980	Mus_caroli
ENSSDUG00000016413	rbfox1	99	74.046	ENSMUSG00000008658	Rbfox1	99	81.061	Mus_musculus
ENSSDUG00000016413	rbfox1	99	73.724	MGP_PahariEiJ_G0016135	Rbfox1	98	73.980	Mus_pahari
ENSSDUG00000016413	rbfox1	99	73.724	MGP_SPRETEiJ_G0021321	Rbfox1	98	73.980	Mus_spretus
ENSSDUG00000016413	rbfox1	81	71.560	ENSMPUG00000014822	RBFOX1	85	69.139	Mustela_putorius_furo
ENSSDUG00000016413	rbfox1	75	77.922	ENSMLUG00000015896	RBFOX1	100	78.247	Myotis_lucifugus
ENSSDUG00000016413	rbfox1	99	73.980	ENSNGAG00000023276	Rbfox1	100	74.235	Nannospalax_galili
ENSSDUG00000016413	rbfox1	100	68.238	ENSNBRG00000011084	rbfox1	95	68.238	Neolamprologus_brichardi
ENSSDUG00000016413	rbfox1	99	79.452	ENSNLEG00000010017	-	97	79.348	Nomascus_leucogenys
ENSSDUG00000016413	rbfox1	82	93.846	ENSMEUG00000012525	RBFOX1	68	93.846	Notamacropus_eugenii
ENSSDUG00000016413	rbfox1	75	97.500	ENSOPRG00000006199	-	62	97.500	Ochotona_princeps
ENSSDUG00000016413	rbfox1	99	74.490	ENSODEG00000013166	RBFOX1	98	74.745	Octodon_degus
ENSSDUG00000016413	rbfox1	85	70.000	ENSOANG00000002379	RBFOX1	89	68.639	Ornithorhynchus_anatinus
ENSSDUG00000016413	rbfox1	63	77.928	ENSOCUG00000001205	-	97	77.928	Oryctolagus_cuniculus
ENSSDUG00000016413	rbfox1	100	73.367	ENSOGAG00000025535	RBFOX1	99	73.618	Otolemur_garnettii
ENSSDUG00000016413	rbfox1	63	67.117	ENSOARG00000005135	RBFOX1	86	66.518	Ovis_aries
ENSSDUG00000016413	rbfox1	99	79.726	ENSPPAG00000036238	-	100	80.000	Pan_paniscus
ENSSDUG00000016413	rbfox1	99	80.000	ENSPPRG00000006546	RBFOX1	97	79.891	Panthera_pardus
ENSSDUG00000016413	rbfox1	99	69.003	ENSPTIG00000021154	RBFOX1	100	68.449	Panthera_tigris_altaica
ENSSDUG00000016413	rbfox1	99	79.726	ENSPTRG00000007744	RBFOX1	97	79.620	Pan_troglodytes
ENSSDUG00000016413	rbfox1	99	79.726	ENSPANG00000026500	RBFOX1	97	79.620	Papio_anubis
ENSSDUG00000016413	rbfox1	79	77.320	ENSPKIG00000019353	rbfox1	90	78.571	Paramormyrops_kingsleyae
ENSSDUG00000016413	rbfox1	99	77.384	ENSPKIG00000009667	-	95	79.360	Paramormyrops_kingsleyae
ENSSDUG00000016413	rbfox1	99	74.112	ENSPSIG00000006523	RBFOX1	98	74.365	Pelodiscus_sinensis
ENSSDUG00000016413	rbfox1	99	73.724	ENSPEMG00000017607	Rbfox1	98	73.980	Peromyscus_maniculatus_bairdii
ENSSDUG00000016413	rbfox1	70	78.169	ENSPCIG00000026887	RBFOX1	100	80.634	Phascolarctos_cinereus
ENSSDUG00000016413	rbfox1	81	71.560	ENSPPYG00000007079	-	85	69.436	Pongo_abelii
ENSSDUG00000016413	rbfox1	88	65.730	ENSPCAG00000002630	RBFOX1	93	66.292	Procavia_capensis
ENSSDUG00000016413	rbfox1	99	79.726	ENSPCOG00000025687	RBFOX1	97	79.620	Propithecus_coquereli
ENSSDUG00000016413	rbfox1	99	70.051	ENSPVAG00000013467	RBFOX1	94	70.781	Pteropus_vampyrus
ENSSDUG00000016413	rbfox1	95	76.882	ENSPNAG00000023109	rbfox1	100	77.151	Pygocentrus_nattereri
ENSSDUG00000016413	rbfox1	99	73.469	ENSRNOG00000002827	Rbfox1	94	73.418	Rattus_norvegicus
ENSSDUG00000016413	rbfox1	99	79.726	ENSRBIG00000044478	RBFOX1	100	80.000	Rhinopithecus_bieti
ENSSDUG00000016413	rbfox1	99	79.726	ENSRROG00000044411	RBFOX1	97	79.620	Rhinopithecus_roxellana
ENSSDUG00000016413	rbfox1	99	80.548	ENSSBOG00000033726	RBFOX1	97	80.435	Saimiri_boliviensis_boliviensis
ENSSDUG00000016413	rbfox1	100	73.804	ENSSHAG00000009257	RBFOX1	99	74.055	Sarcophilus_harrisii
ENSSDUG00000016413	rbfox1	99	74.286	ENSSFOG00015023675	rbfox1	98	73.580	Scleropages_formosus
ENSSDUG00000016413	rbfox1	89	72.404	ENSSFOG00015009955	-	84	72.997	Scleropages_formosus
ENSSDUG00000016413	rbfox1	99	88.654	ENSSMAG00000015505	rbfox1	96	86.047	Scophthalmus_maximus
ENSSDUG00000016413	rbfox1	84	100.000	ENSSLDG00000009353	rbfox1	95	96.346	Seriola_lalandi_dorsalis
ENSSDUG00000016413	rbfox1	84	78.846	ENSSPUG00000009732	RBFOX1	87	79.487	Sphenodon_punctatus
ENSSDUG00000016413	rbfox1	99	93.372	ENSSPAG00000009723	rbfox1	100	92.000	Stegastes_partitus
ENSSDUG00000016413	rbfox1	95	73.087	ENSSSCG00000007917	RBFOX1	91	73.351	Sus_scrofa
ENSSDUG00000016413	rbfox1	99	74.809	ENSTGUG00000004562	RBFOX1	100	75.064	Taeniopygia_guttata
ENSSDUG00000016413	rbfox1	98	87.206	ENSTRUG00000020940	rbfox1	100	86.945	Takifugu_rubripes
ENSSDUG00000016413	rbfox1	64	63.415	ENSTNIG00000002567	rbfox1	100	63.415	Tetraodon_nigroviridis
ENSSDUG00000016413	rbfox1	64	89.706	ENSTBEG00000009169	-	54	89.706	Tupaia_belangeri
ENSSDUG00000016413	rbfox1	99	73.537	ENSTTRG00000005700	RBFOX1	94	73.737	Tursiops_truncatus
ENSSDUG00000016413	rbfox1	100	76.378	ENSUAMG00000024633	RBFOX1	100	80.000	Ursus_americanus
ENSSDUG00000016413	rbfox1	100	71.038	ENSUMAG00000003579	RBFOX1	100	68.984	Ursus_maritimus
ENSSDUG00000016413	rbfox1	75	77.023	ENSVPAG00000001284	RBFOX1	74	77.670	Vicugna_pacos
ENSSDUG00000016413	rbfox1	100	79.189	ENSVVUG00000017311	RBFOX1	89	80.328	Vulpes_vulpes