EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000016414 (Gene tree)
Gene ID: 111237086
Gene Symbol: trub1
Alias: zgc:195155
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 18444 bases
Position: chrBDQW01000807.1:1844381-1862824
Accession: 111237086
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000022544	TruB_N	PF01509.18	4.5e-47	1	1
ENSSDUP00000022555	TruB_N	PF01509.18	4.5e-47	1	1
ENSSDUP00000022570	TruB_N	PF01509.18	4.5e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000022985	-	2380	-	ENSSDUP00000022570	278 (aa)	-	UPI000BBEC7E0
ENSSDUT00000022969	-	2380	XM_022766051	ENSSDUP00000022555	278 (aa)	XP_022621772	UPI000BBEC7E0
ENSSDUT00000022959	-	2380	-	ENSSDUP00000022544	278 (aa)	-	UPI000BBEC7E0

Gene Model

Click here to download ENSSDUG00000016414's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000016414's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000016414	trub1	70	31.313	ENSSDUG00000016928	trub2	61	30.583

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000016414	trub1	88	69.106	ENSG00000165832	TRUB1	69	69.167	Homo_sapiens
ENSSDUG00000016414	trub1	94	87.786	ENSAPOG00000020565	trub1	96	87.547	Acanthochromis_polyacanthus
ENSSDUG00000016414	trub1	88	68.548	ENSAMEG00000014931	TRUB1	69	68.595	Ailuropoda_melanoleuca
ENSSDUG00000016414	trub1	97	83.271	ENSACIG00000003060	trub1	90	83.271	Amphilophus_citrinellus
ENSSDUG00000016414	trub1	94	88.931	ENSAOCG00000017188	trub1	96	88.679	Amphiprion_ocellaris
ENSSDUG00000016414	trub1	94	89.695	ENSAPEG00000015209	trub1	96	89.434	Amphiprion_percula
ENSSDUG00000016414	trub1	88	91.020	ENSATEG00000023291	trub1	85	91.525	Anabas_testudineus
ENSSDUG00000016414	trub1	88	69.262	ENSAPLG00000006808	TRUB1	86	69.038	Anas_platyrhynchos
ENSSDUG00000016414	trub1	88	66.531	ENSACAG00000009282	TRUB1	86	67.364	Anolis_carolinensis
ENSSDUG00000016414	trub1	88	69.106	ENSANAG00000022870	TRUB1	68	69.167	Aotus_nancymaae
ENSSDUG00000016414	trub1	97	85.130	ENSACLG00000000823	trub1	97	85.130	Astatotilapia_calliptera
ENSSDUG00000016414	trub1	90	80.080	ENSAMXG00000015845	trub1	81	80.498	Astyanax_mexicanus
ENSSDUG00000016414	trub1	88	70.325	ENSBTAG00000012955	TRUB1	68	70.417	Bos_taurus
ENSSDUG00000016414	trub1	88	69.106	ENSCJAG00000047815	TRUB1	68	69.167	Callithrix_jacchus
ENSSDUG00000016414	trub1	88	69.512	ENSCAFG00000011688	TRUB1	69	69.583	Canis_familiaris
ENSSDUG00000016414	trub1	88	69.512	ENSCAFG00020013237	TRUB1	69	69.583	Canis_lupus_dingo
ENSSDUG00000016414	trub1	88	69.512	ENSCHIG00000020884	TRUB1	72	69.583	Capra_hircus
ENSSDUG00000016414	trub1	88	67.480	ENSTSYG00000000446	TRUB1	68	67.917	Carlito_syrichta
ENSSDUG00000016414	trub1	76	61.792	ENSCAPG00000017088	TRUB1	82	61.792	Cavia_aperea
ENSSDUG00000016414	trub1	68	65.789	ENSCPOG00000040236	-	73	67.232	Cavia_porcellus
ENSSDUG00000016414	trub1	69	65.285	ENSCPOG00000030129	-	70	66.667	Cavia_porcellus
ENSSDUG00000016414	trub1	88	69.106	ENSCCAG00000028842	TRUB1	68	69.167	Cebus_capucinus
ENSSDUG00000016414	trub1	88	69.106	ENSCATG00000033431	TRUB1	69	69.167	Cercocebus_atys
ENSSDUG00000016414	trub1	66	66.120	ENSCLAG00000008664	TRUB1	73	66.102	Chinchilla_lanigera
ENSSDUG00000016414	trub1	88	69.106	ENSCSAG00000004891	TRUB1	69	69.167	Chlorocebus_sabaeus
ENSSDUG00000016414	trub1	87	61.317	ENSCHOG00000011931	TRUB1	68	61.181	Choloepus_hoffmanni
ENSSDUG00000016414	trub1	90	69.200	ENSCPBG00000003051	TRUB1	82	70.711	Chrysemys_picta_bellii
ENSSDUG00000016414	trub1	88	69.106	ENSCANG00000029445	TRUB1	69	69.167	Colobus_angolensis_palliatus
ENSSDUG00000016414	trub1	77	69.014	ENSCGRG00001016772	-	71	68.837	Cricetulus_griseus_chok1gshd
ENSSDUG00000016414	trub1	86	60.251	ENSCGRG00001010322	-	64	60.000	Cricetulus_griseus_chok1gshd
ENSSDUG00000016414	trub1	86	68.201	ENSCGRG00000010806	Trub1	73	67.917	Cricetulus_griseus_crigri
ENSSDUG00000016414	trub1	94	79.008	ENSCSEG00000011261	trub1	79	81.557	Cynoglossus_semilaevis
ENSSDUG00000016414	trub1	92	82.745	ENSCVAG00000008791	trub1	74	83.402	Cyprinodon_variegatus
ENSSDUG00000016414	trub1	90	76.707	ENSDARG00000053805	trub1	82	76.151	Danio_rerio
ENSSDUG00000016414	trub1	88	66.260	ENSDNOG00000001069	TRUB1	68	66.250	Dasypus_novemcinctus
ENSSDUG00000016414	trub1	86	68.201	ENSDORG00000010431	Trub1	69	67.917	Dipodomys_ordii
ENSSDUG00000016414	trub1	88	68.699	ENSEASG00005014739	TRUB1	69	68.750	Equus_asinus_asinus
ENSSDUG00000016414	trub1	88	68.699	ENSECAG00000007177	TRUB1	69	68.750	Equus_caballus
ENSSDUG00000016414	trub1	88	60.163	ENSEEUG00000013993	TRUB1	67	60.000	Erinaceus_europaeus
ENSSDUG00000016414	trub1	94	79.008	ENSELUG00000000502	trub1	85	81.481	Esox_lucius
ENSSDUG00000016414	trub1	92	67.315	ENSFCAG00000031927	TRUB1	69	69.583	Felis_catus
ENSSDUG00000016414	trub1	78	68.519	ENSFALG00000002232	TRUB1	83	68.519	Ficedula_albicollis
ENSSDUG00000016414	trub1	66	67.760	ENSFDAG00000008140	TRUB1	73	67.797	Fukomys_damarensis
ENSSDUG00000016414	trub1	99	81.818	ENSFHEG00000004016	trub1	95	81.818	Fundulus_heteroclitus
ENSSDUG00000016414	trub1	89	67.206	ENSGALG00000009091	TRUB1	84	67.364	Gallus_gallus
ENSSDUG00000016414	trub1	92	83.984	ENSGAFG00000009193	trub1	89	80.078	Gambusia_affinis
ENSSDUG00000016414	trub1	71	89.286	ENSGACG00000015387	trub1	96	89.286	Gasterosteus_aculeatus
ENSSDUG00000016414	trub1	88	70.204	ENSGAGG00000009758	TRUB1	68	70.293	Gopherus_agassizii
ENSSDUG00000016414	trub1	88	69.106	ENSGGOG00000004583	TRUB1	69	69.167	Gorilla_gorilla
ENSSDUG00000016414	trub1	97	84.758	ENSHBUG00000016787	trub1	97	84.758	Haplochromis_burtoni
ENSSDUG00000016414	trub1	88	68.293	ENSHGLG00000015314	TRUB1	69	68.333	Heterocephalus_glaber_female
ENSSDUG00000016414	trub1	66	67.213	ENSHGLG00100009183	TRUB1	75	67.232	Heterocephalus_glaber_male
ENSSDUG00000016414	trub1	99	82.545	ENSHCOG00000017877	trub1	99	82.246	Hippocampus_comes
ENSSDUG00000016414	trub1	92	76.863	ENSIPUG00000017559	trub1	85	77.593	Ictalurus_punctatus
ENSSDUG00000016414	trub1	88	68.699	ENSSTOG00000003641	TRUB1	72	68.750	Ictidomys_tridecemlineatus
ENSSDUG00000016414	trub1	88	67.886	ENSJJAG00000011800	Trub1	71	67.917	Jaculus_jaculus
ENSSDUG00000016414	trub1	96	85.448	ENSKMAG00000006232	trub1	96	85.448	Kryptolebias_marmoratus
ENSSDUG00000016414	trub1	99	85.199	ENSLBEG00000026722	trub1	97	85.199	Labrus_bergylta
ENSSDUG00000016414	trub1	94	70.385	ENSLACG00000014885	TRUB1	86	70.385	Latimeria_chalumnae
ENSSDUG00000016414	trub1	94	73.664	ENSLOCG00000012979	trub1	82	77.083	Lepisosteus_oculatus
ENSSDUG00000016414	trub1	90	68.000	ENSLAFG00000015452	TRUB1	69	68.750	Loxodonta_africana
ENSSDUG00000016414	trub1	88	69.106	ENSMFAG00000031767	TRUB1	69	69.167	Macaca_fascicularis
ENSSDUG00000016414	trub1	88	69.106	ENSMMUG00000001902	TRUB1	69	69.167	Macaca_mulatta
ENSSDUG00000016414	trub1	88	63.415	ENSMNEG00000044646	TRUB1	68	63.750	Macaca_nemestrina
ENSSDUG00000016414	trub1	88	69.106	ENSMLEG00000042655	TRUB1	69	69.167	Mandrillus_leucophaeus
ENSSDUG00000016414	trub1	97	85.130	ENSMZEG00005024095	trub1	97	85.130	Maylandia_zebra
ENSSDUG00000016414	trub1	89	68.016	ENSMGAG00000011135	TRUB1	82	68.201	Meleagris_gallopavo
ENSSDUG00000016414	trub1	86	66.109	ENSMAUG00000011101	Trub1	71	65.833	Mesocricetus_auratus
ENSSDUG00000016414	trub1	88	68.699	ENSMICG00000016324	TRUB1	69	68.750	Microcebus_murinus
ENSSDUG00000016414	trub1	86	68.487	ENSMOCG00000017759	Trub1	72	68.201	Microtus_ochrogaster
ENSSDUG00000016414	trub1	88	69.262	ENSMODG00000009676	TRUB1	66	69.038	Monodelphis_domestica
ENSSDUG00000016414	trub1	87	67.769	MGP_CAROLIEiJ_G0023100	Trub1	73	67.956	Mus_caroli
ENSSDUG00000016414	trub1	87	66.942	ENSMUSG00000025086	Trub1	73	66.851	Mus_musculus
ENSSDUG00000016414	trub1	88	66.667	MGP_PahariEiJ_G0014588	Trub1	71	66.667	Mus_pahari
ENSSDUG00000016414	trub1	87	66.942	MGP_SPRETEiJ_G0024021	Trub1	73	67.403	Mus_spretus
ENSSDUG00000016414	trub1	88	69.512	ENSMPUG00000003556	TRUB1	69	69.583	Mustela_putorius_furo
ENSSDUG00000016414	trub1	88	67.886	ENSMLUG00000017686	TRUB1	71	67.917	Myotis_lucifugus
ENSSDUG00000016414	trub1	88	68.293	ENSNGAG00000018682	Trub1	69	68.333	Nannospalax_galili
ENSSDUG00000016414	trub1	92	87.843	ENSNBRG00000023393	trub1	88	88.571	Neolamprologus_brichardi
ENSSDUG00000016414	trub1	88	69.106	ENSNLEG00000016345	TRUB1	69	69.167	Nomascus_leucogenys
ENSSDUG00000016414	trub1	72	71.144	ENSMEUG00000006603	TRUB1	73	70.918	Notamacropus_eugenii
ENSSDUG00000016414	trub1	88	67.886	ENSOPRG00000009371	TRUB1	70	67.917	Ochotona_princeps
ENSSDUG00000016414	trub1	88	65.854	ENSODEG00000010854	TRUB1	69	65.833	Octodon_degus
ENSSDUG00000016414	trub1	97	86.617	ENSONIG00000007249	trub1	98	86.617	Oreochromis_niloticus
ENSSDUG00000016414	trub1	89	67.206	ENSOANG00000001556	TRUB1	78	67.932	Ornithorhynchus_anatinus
ENSSDUG00000016414	trub1	88	68.293	ENSOCUG00000009456	TRUB1	69	68.333	Oryctolagus_cuniculus
ENSSDUG00000016414	trub1	97	81.550	ENSORLG00000029719	trub1	97	81.550	Oryzias_latipes
ENSSDUG00000016414	trub1	97	81.550	ENSORLG00020016767	trub1	96	81.550	Oryzias_latipes_hni
ENSSDUG00000016414	trub1	96	81.273	ENSORLG00015014728	trub1	96	81.273	Oryzias_latipes_hsok
ENSSDUG00000016414	trub1	93	86.873	ENSOMEG00000014556	trub1	91	86.873	Oryzias_melastigma
ENSSDUG00000016414	trub1	88	69.106	ENSOGAG00000015895	TRUB1	69	69.167	Otolemur_garnettii
ENSSDUG00000016414	trub1	88	67.589	ENSOARG00000015591	TRUB1	70	67.611	Ovis_aries
ENSSDUG00000016414	trub1	88	69.106	ENSPPAG00000043645	TRUB1	69	69.167	Pan_paniscus
ENSSDUG00000016414	trub1	92	66.926	ENSPPRG00000007096	TRUB1	69	69.167	Panthera_pardus
ENSSDUG00000016414	trub1	92	66.926	ENSPTIG00000006378	TRUB1	69	69.167	Panthera_tigris_altaica
ENSSDUG00000016414	trub1	88	69.106	ENSPTRG00000002964	TRUB1	69	69.167	Pan_troglodytes
ENSSDUG00000016414	trub1	88	69.106	ENSPANG00000020712	TRUB1	69	69.167	Papio_anubis
ENSSDUG00000016414	trub1	61	78.698	ENSPKIG00000003852	trub1	73	78.698	Paramormyrops_kingsleyae
ENSSDUG00000016414	trub1	90	68.924	ENSPSIG00000012877	TRUB1	82	70.168	Pelodiscus_sinensis
ENSSDUG00000016414	trub1	99	77.617	ENSPMGG00000000075	trub1	96	77.256	Periophthalmus_magnuspinnatus
ENSSDUG00000016414	trub1	88	68.699	ENSPEMG00000011156	Trub1	71	68.750	Peromyscus_maniculatus_bairdii
ENSSDUG00000016414	trub1	88	69.262	ENSPCIG00000009729	TRUB1	65	69.038	Phascolarctos_cinereus
ENSSDUG00000016414	trub1	95	83.396	ENSPFOG00000009950	trub1	97	80.755	Poecilia_formosa
ENSSDUG00000016414	trub1	97	83.271	ENSPLAG00000013855	trub1	94	80.669	Poecilia_latipinna
ENSSDUG00000016414	trub1	97	83.643	ENSPMEG00000009064	trub1	97	81.041	Poecilia_mexicana
ENSSDUG00000016414	trub1	97	83.643	ENSPREG00000003343	trub1	97	81.041	Poecilia_reticulata
ENSSDUG00000016414	trub1	88	68.699	ENSPPYG00000002676	TRUB1	69	68.750	Pongo_abelii
ENSSDUG00000016414	trub1	90	62.000	ENSPCAG00000008427	TRUB1	68	62.500	Procavia_capensis
ENSSDUG00000016414	trub1	88	63.008	ENSPCOG00000024360	TRUB1	67	62.083	Propithecus_coquereli
ENSSDUG00000016414	trub1	73	70.297	ENSPVAG00000007575	TRUB1	75	70.408	Pteropus_vampyrus
ENSSDUG00000016414	trub1	97	84.758	ENSPNYG00000018614	trub1	97	84.758	Pundamilia_nyererei
ENSSDUG00000016414	trub1	92	68.627	ENSPNAG00000006881	trub1	77	68.465	Pygocentrus_nattereri
ENSSDUG00000016414	trub1	88	66.260	ENSRNOG00000017321	Trub1	70	66.250	Rattus_norvegicus
ENSSDUG00000016414	trub1	88	59.677	ENSRBIG00000033423	TRUB1	66	59.504	Rhinopithecus_bieti
ENSSDUG00000016414	trub1	88	69.106	ENSRROG00000033902	TRUB1	69	69.167	Rhinopithecus_roxellana
ENSSDUG00000016414	trub1	88	69.106	ENSSBOG00000024237	TRUB1	68	69.167	Saimiri_boliviensis_boliviensis
ENSSDUG00000016414	trub1	77	69.767	ENSSHAG00000009346	TRUB1	72	69.767	Sarcophilus_harrisii
ENSSDUG00000016414	trub1	93	77.606	ENSSFOG00015022124	trub1	88	77.606	Scleropages_formosus
ENSSDUG00000016414	trub1	95	89.434	ENSSMAG00000001020	trub1	94	89.434	Scophthalmus_maximus
ENSSDUG00000016414	trub1	100	98.921	ENSSLDG00000015486	trub1	100	98.921	Seriola_lalandi_dorsalis
ENSSDUG00000016414	trub1	94	66.540	ENSSPUG00000001642	TRUB1	90	66.160	Sphenodon_punctatus
ENSSDUG00000016414	trub1	100	84.892	ENSSPAG00000001217	trub1	100	84.892	Stegastes_partitus
ENSSDUG00000016414	trub1	88	68.699	ENSSSCG00000010653	TRUB1	70	68.750	Sus_scrofa
ENSSDUG00000016414	trub1	88	69.388	ENSTGUG00000010971	TRUB1	85	69.167	Taeniopygia_guttata
ENSSDUG00000016414	trub1	76	58.962	ENSTBEG00000002880	TRUB1	83	58.962	Tupaia_belangeri
ENSSDUG00000016414	trub1	73	69.802	ENSTTRG00000005767	TRUB1	75	69.898	Tursiops_truncatus
ENSSDUG00000016414	trub1	88	69.512	ENSUAMG00000024876	TRUB1	69	69.583	Ursus_americanus
ENSSDUG00000016414	trub1	88	69.512	ENSUMAG00000002411	TRUB1	71	69.583	Ursus_maritimus
ENSSDUG00000016414	trub1	88	69.512	ENSVPAG00000005507	TRUB1	69	69.583	Vicugna_pacos
ENSSDUG00000016414	trub1	88	69.512	ENSVVUG00000010085	TRUB1	58	69.583	Vulpes_vulpes
ENSSDUG00000016414	trub1	88	67.347	ENSXETG00000023828	trub1	85	68.354	Xenopus_tropicalis
ENSSDUG00000016414	trub1	89	85.484	ENSXCOG00000017847	trub1	82	85.837	Xiphophorus_couchianus
ENSSDUG00000016414	trub1	97	83.643	ENSXMAG00000014701	trub1	97	81.041	Xiphophorus_maculatus