EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000016875 (Gene tree)
Gene ID: 111237068
Gene Symbol: bms1
Alias: bms1l|im:7152071|wu:fb37d08
Full Name: BMS1%2C ribosome biogenesis factor
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 15830 bases
Position: chrBDQW01000807.1:2390674-2406503
Accession: 111237068
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000023260	AARP2CN	PF08142.12	3.6e-32	1	1
ENSSDUP00000023210	AARP2CN	PF08142.12	4.9e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000023692	-	2418	-	ENSSDUP00000023260	613 (aa)	-	-
ENSSDUT00000023639	-	4421	XM_022766023	ENSSDUP00000023210	1228 (aa)	XP_022621744	UPI000BBF2F45

Gene Model

Click here to download ENSSDUG00000016875's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000016875's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000016875	bms1	90	58.306	ENSG00000165733	BMS1	89	68.932	Homo_sapiens
ENSSDUG00000016875	bms1	88	84.366	ENSAPOG00000002296	bms1	100	83.380	Acanthochromis_polyacanthus
ENSSDUG00000016875	bms1	60	92.391	ENSAPOG00000020157	-	99	92.391	Acanthochromis_polyacanthus
ENSSDUG00000016875	bms1	100	77.813	ENSACIG00000002588	bms1	94	84.244	Amphilophus_citrinellus
ENSSDUG00000016875	bms1	100	84.615	ENSAOCG00000018088	bms1	100	84.291	Amphiprion_ocellaris
ENSSDUG00000016875	bms1	100	84.846	ENSAPEG00000014673	bms1	100	84.684	Amphiprion_percula
ENSSDUG00000016875	bms1	100	85.391	ENSATEG00000023465	bms1	100	85.032	Anabas_testudineus
ENSSDUG00000016875	bms1	96	65.120	ENSACAG00000004537	-	89	68.618	Anolis_carolinensis
ENSSDUG00000016875	bms1	86	64.060	ENSANAG00000023432	BMS1	88	68.071	Aotus_nancymaae
ENSSDUG00000016875	bms1	100	81.220	ENSACLG00000001294	bms1	100	81.301	Astatotilapia_calliptera
ENSSDUG00000016875	bms1	82	53.071	WBGene00022021	Y61A9LA.10	91	56.300	Caenorhabditis_elegans
ENSSDUG00000016875	bms1	86	65.414	ENSCJAG00000021705	BMS1	89	68.720	Callithrix_jacchus
ENSSDUG00000016875	bms1	99	61.712	ENSCHIG00000023251	BMS1	88	69.854	Capra_hircus
ENSSDUG00000016875	bms1	99	57.858	ENSCAPG00000008652	BMS1	88	62.894	Cavia_aperea
ENSSDUG00000016875	bms1	99	60.646	ENSCPOG00000000502	BMS1	88	68.608	Cavia_porcellus
ENSSDUG00000016875	bms1	86	51.667	ENSCCAG00000024969	-	78	58.929	Cebus_capucinus
ENSSDUG00000016875	bms1	66	52.956	ENSCATG00000008695	-	70	58.166	Cercocebus_atys
ENSSDUG00000016875	bms1	99	61.167	ENSCLAG00000002446	BMS1	88	67.799	Chinchilla_lanigera
ENSSDUG00000016875	bms1	98	61.039	ENSCPBG00000025581	BMS1	86	68.395	Chrysemys_picta_bellii
ENSSDUG00000016875	bms1	82	61.179	ENSCING00000003181	-	97	60.432	Ciona_intestinalis
ENSSDUG00000016875	bms1	71	54.588	ENSCSAVG00000004113	-	72	70.870	Ciona_savignyi
ENSSDUG00000016875	bms1	98	61.107	ENSCGRG00001019461	Bms1	90	67.363	Cricetulus_griseus_chok1gshd
ENSSDUG00000016875	bms1	98	61.107	ENSCGRG00000009016	Bms1	90	67.363	Cricetulus_griseus_crigri
ENSSDUG00000016875	bms1	90	78.648	ENSCSEG00000002469	bms1	50	82.258	Cynoglossus_semilaevis
ENSSDUG00000016875	bms1	100	78.785	ENSCVAG00000008371	bms1	100	80.081	Cyprinodon_variegatus
ENSSDUG00000016875	bms1	99	73.098	ENSDARG00000054154	bms1	91	74.717	Danio_rerio
ENSSDUG00000016875	bms1	99	60.736	ENSDNOG00000015761	BMS1	88	68.720	Dasypus_novemcinctus
ENSSDUG00000016875	bms1	93	55.975	FBgn0036686	CG7728	92	60.190	Drosophila_melanogaster
ENSSDUG00000016875	bms1	70	70.183	ENSETEG00000009554	BMS1	78	66.964	Echinops_telfairi
ENSSDUG00000016875	bms1	99	73.494	ENSELUG00000001756	bms1	75	89.560	Esox_lucius
ENSSDUG00000016875	bms1	94	70.048	ENSFALG00000006882	BMS1	86	69.649	Ficedula_albicollis
ENSSDUG00000016875	bms1	99	61.017	ENSFDAG00000001422	BMS1	88	67.961	Fukomys_damarensis
ENSSDUG00000016875	bms1	100	80.537	ENSFHEG00000003367	bms1	100	79.658	Fundulus_heteroclitus
ENSSDUG00000016875	bms1	99	62.338	ENSGALG00000002624	BMS1	87	69.516	Gallus_gallus
ENSSDUG00000016875	bms1	71	88.584	ENSGAFG00000009067	bms1	88	85.714	Gambusia_affinis
ENSSDUG00000016875	bms1	99	86.174	ENSGACG00000015334	bms1	89	85.691	Gasterosteus_aculeatus
ENSSDUG00000016875	bms1	96	65.809	ENSGAGG00000003467	BMS1	87	68.071	Gopherus_agassizii
ENSSDUG00000016875	bms1	100	81.138	ENSHBUG00000022628	bms1	100	81.220	Haplochromis_burtoni
ENSSDUG00000016875	bms1	99	78.969	ENSHCOG00000017604	bms1	99	78.904	Hippocampus_comes
ENSSDUG00000016875	bms1	99	72.498	ENSIPUG00000017855	bms1	100	72.130	Ictalurus_punctatus
ENSSDUG00000016875	bms1	99	60.731	ENSSTOG00000015063	BMS1	88	68.994	Ictidomys_tridecemlineatus
ENSSDUG00000016875	bms1	90	79.529	ENSKMAG00000021982	bms1	97	74.413	Kryptolebias_marmoratus
ENSSDUG00000016875	bms1	100	78.208	ENSLBEG00000028208	bms1	100	78.935	Labrus_bergylta
ENSSDUG00000016875	bms1	68	82.169	ENSLOCG00000012914	bms1	99	71.406	Lepisosteus_oculatus
ENSSDUG00000016875	bms1	87	64.825	ENSLAFG00000006250	BMS1	88	68.770	Loxodonta_africana
ENSSDUG00000016875	bms1	86	66.353	ENSMFAG00000037771	BMS1	98	66.165	Macaca_fascicularis
ENSSDUG00000016875	bms1	85	53.131	ENSMMUG00000007426	-	86	63.984	Macaca_mulatta
ENSSDUG00000016875	bms1	85	52.542	ENSMLEG00000029084	-	78	56.959	Mandrillus_leucophaeus
ENSSDUG00000016875	bms1	100	83.916	ENSMAMG00000020855	bms1	100	83.022	Mastacembelus_armatus
ENSSDUG00000016875	bms1	100	81.220	ENSMZEG00005005663	bms1	100	81.301	Maylandia_zebra
ENSSDUG00000016875	bms1	89	69.243	ENSMGAG00000001170	BMS1	87	69.032	Meleagris_gallopavo
ENSSDUG00000016875	bms1	98	61.137	ENSMAUG00000002195	Bms1	89	67.258	Mesocricetus_auratus
ENSSDUG00000016875	bms1	86	64.662	ENSMICG00000009977	BMS1	88	68.447	Microcebus_murinus
ENSSDUG00000016875	bms1	100	82.085	ENSMMOG00000000977	bms1	100	81.189	Mola_mola
ENSSDUG00000016875	bms1	87	66.182	ENSMODG00000001177	BMS1	87	69.502	Monodelphis_domestica
ENSSDUG00000016875	bms1	100	85.065	ENSMALG00000009680	bms1	100	84.659	Monopterus_albus
ENSSDUG00000016875	bms1	64	76.441	MGP_CAROLIEiJ_G0028785	-	62	77.350	Mus_caroli
ENSSDUG00000016875	bms1	98	60.728	ENSMUSG00000030138	Bms1	88	67.476	Mus_musculus
ENSSDUG00000016875	bms1	84	65.774	MGP_PahariEiJ_G0022539	Bms1	88	66.881	Mus_pahari
ENSSDUG00000016875	bms1	98	60.496	MGP_SPRETEiJ_G0029816	Bms1	88	67.476	Mus_spretus
ENSSDUG00000016875	bms1	99	56.300	ENSNGAG00000015258	Bms1	84	68.770	Nannospalax_galili
ENSSDUG00000016875	bms1	73	88.814	ENSNBRG00000023627	bms1	98	89.474	Neolamprologus_brichardi
ENSSDUG00000016875	bms1	83	76.284	ENSOPRG00000005195	BMS1	80	75.980	Ochotona_princeps
ENSSDUG00000016875	bms1	99	60.585	ENSODEG00000005554	BMS1	88	67.799	Octodon_degus
ENSSDUG00000016875	bms1	100	82.262	ENSONIG00000007227	bms1	100	81.286	Oreochromis_niloticus
ENSSDUG00000016875	bms1	99	61.409	ENSOANG00000000662	-	88	68.810	Ornithorhynchus_anatinus
ENSSDUG00000016875	bms1	100	80.945	ENSORLG00000014655	bms1	100	80.212	Oryzias_latipes
ENSSDUG00000016875	bms1	90	78.662	ENSORLG00020016246	bms1	82	79.699	Oryzias_latipes_hni
ENSSDUG00000016875	bms1	90	79.566	ENSORLG00015014183	bms1	100	79.207	Oryzias_latipes_hsok
ENSSDUG00000016875	bms1	100	80.537	ENSOMEG00000015042	bms1	100	80.375	Oryzias_melastigma
ENSSDUG00000016875	bms1	99	60.695	ENSOGAG00000006511	BMS1	88	68.226	Otolemur_garnettii
ENSSDUG00000016875	bms1	99	61.288	ENSOARG00000003900	BMS1	88	70.016	Ovis_aries
ENSSDUG00000016875	bms1	90	58.143	ENSPPAG00000027837	BMS1	89	63.328	Pan_paniscus
ENSSDUG00000016875	bms1	90	58.143	ENSPTRG00000002441	BMS1	89	69.305	Pan_troglodytes
ENSSDUG00000016875	bms1	86	80.690	ENSPKIG00000008165	bms1	88	78.652	Paramormyrops_kingsleyae
ENSSDUG00000016875	bms1	99	60.320	ENSPSIG00000006481	BMS1	87	67.308	Pelodiscus_sinensis
ENSSDUG00000016875	bms1	66	91.337	ENSPMGG00000012075	bms1	99	91.337	Periophthalmus_magnuspinnatus
ENSSDUG00000016875	bms1	87	65.074	ENSPCIG00000001339	BMS1	85	72.676	Phascolarctos_cinereus
ENSSDUG00000016875	bms1	95	83.871	ENSPFOG00000015180	bms1	99	78.091	Poecilia_formosa
ENSSDUG00000016875	bms1	90	77.617	ENSPLAG00000007150	bms1	90	78.159	Poecilia_latipinna
ENSSDUG00000016875	bms1	99	79.414	ENSPMEG00000023176	bms1	94	79.170	Poecilia_mexicana
ENSSDUG00000016875	bms1	99	78.973	ENSPREG00000002695	bms1	99	79.218	Poecilia_reticulata
ENSSDUG00000016875	bms1	90	58.469	ENSPPYG00000002836	-	83	63.177	Pongo_abelii
ENSSDUG00000016875	bms1	86	64.794	ENSPCAG00000014528	BMS1	71	70.241	Procavia_capensis
ENSSDUG00000016875	bms1	100	80.146	ENSPNYG00000018866	bms1	100	80.389	Pundamilia_nyererei
ENSSDUG00000016875	bms1	86	73.535	ENSPNAG00000000676	bms1	90	80.998	Pygocentrus_nattereri
ENSSDUG00000016875	bms1	86	64.165	ENSRNOG00000006576	Bms1	86	70.130	Rattus_norvegicus
ENSSDUG00000016875	bms1	90	55.902	ENSRROG00000040101	BMS1	87	70.385	Rhinopithecus_roxellana
ENSSDUG00000016875	bms1	83	43.810	YPL217C	-	84	47.619	Saccharomyces_cerevisiae
ENSSDUG00000016875	bms1	70	72.477	ENSSBOG00000035778	BMS1	88	68.882	Saimiri_boliviensis_boliviensis
ENSSDUG00000016875	bms1	99	66.421	ENSSHAG00000005062	BMS1	87	68.932	Sarcophilus_harrisii
ENSSDUG00000016875	bms1	100	84.282	ENSSMAG00000019966	bms1	100	85.611	Scophthalmus_maximus
ENSSDUG00000016875	bms1	100	96.688	ENSSLDG00000015199	bms1	100	96.688	Seriola_lalandi_dorsalis
ENSSDUG00000016875	bms1	50	73.000	ENSSARG00000014407	BMS1	66	73.000	Sorex_araneus
ENSSDUG00000016875	bms1	70	74.424	ENSSPUG00000014454	BMS1	87	68.994	Sphenodon_punctatus
ENSSDUG00000016875	bms1	93	70.048	ENSTGUG00000006302	-	87	69.404	Taeniopygia_guttata
ENSSDUG00000016875	bms1	99	72.150	ENSTRUG00000008028	bms1	52	76.414	Takifugu_rubripes
ENSSDUG00000016875	bms1	96	75.684	ENSTNIG00000006216	bms1	89	75.929	Tetraodon_nigroviridis
ENSSDUG00000016875	bms1	63	72.148	ENSTBEG00000001673	-	63	72.881	Tupaia_belangeri
ENSSDUG00000016875	bms1	99	60.750	ENSTTRG00000007983	BMS1	80	76.156	Tursiops_truncatus
ENSSDUG00000016875	bms1	98	61.434	ENSXETG00000008158	bms1	90	63.128	Xenopus_tropicalis
ENSSDUG00000016875	bms1	99	77.625	ENSXCOG00000000506	bms1	96	90.686	Xiphophorus_couchianus
ENSSDUG00000016875	bms1	99	79.055	ENSXMAG00000014236	bms1	99	79.136	Xiphophorus_maculatus