EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000016893 (Gene tree)
Gene ID: 111226856
Gene Symbol: casc3
Alias: -
Full Name: CASC3%2C exon junction complex subunit
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 10506 bases
Position: chrBDQW01000166.1:682463-692968
Accession: 111226856
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000023238	Btz	PF09405.10	1.8e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000023669	-	2358	XM_022752153	ENSSDUP00000023238	785 (aa)	XP_022607874	-

Gene Model

Click here to download ENSSDUG00000016893's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03013	RNA transport	KEGG
sdu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000016893's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000016893	casc3	95	74.275	ENSAPOG00000008467	casc3	100	73.392	Acanthochromis_polyacanthus
ENSSDUG00000016893	casc3	69	91.971	ENSACIG00000000720	casc3	92	86.842	Amphilophus_citrinellus
ENSSDUG00000016893	casc3	95	76.015	ENSAOCG00000016676	casc3	100	75.254	Amphiprion_ocellaris
ENSSDUG00000016893	casc3	95	76.531	ENSAPEG00000006787	casc3	100	75.638	Amphiprion_percula
ENSSDUG00000016893	casc3	95	82.653	ENSATEG00000017196	casc3	100	81.888	Anabas_testudineus
ENSSDUG00000016893	casc3	52	58.654	ENSANAG00000031954	-	84	60.096	Aotus_nancymaae
ENSSDUG00000016893	casc3	73	48.734	ENSANAG00000034820	-	92	47.605	Aotus_nancymaae
ENSSDUG00000016893	casc3	95	78.772	ENSACLG00000016198	casc3	100	77.308	Astatotilapia_calliptera
ENSSDUG00000016893	casc3	75	50.774	ENSBTAG00000006250	CASC3	84	49.387	Bos_taurus
ENSSDUG00000016893	casc3	88	44.460	ENSCJAG00000016032	CASC3	79	50.379	Callithrix_jacchus
ENSSDUG00000016893	casc3	68	52.778	ENSCAFG00020018882	CASC3	83	51.190	Canis_lupus_dingo
ENSSDUG00000016893	casc3	76	45.656	ENSCAPG00000010514	CASC3	52	48.837	Cavia_aperea
ENSSDUG00000016893	casc3	76	51.118	ENSCPBG00000004750	CASC3	68	75.410	Chrysemys_picta_bellii
ENSSDUG00000016893	casc3	95	69.403	ENSCSEG00000010047	casc3	100	66.874	Cynoglossus_semilaevis
ENSSDUG00000016893	casc3	95	72.186	ENSCVAG00000014935	casc3	100	69.819	Cyprinodon_variegatus
ENSSDUG00000016893	casc3	75	50.156	ENSETEG00000013720	CASC3	84	48.243	Echinops_telfairi
ENSSDUG00000016893	casc3	72	38.112	ENSEBUG00000010654	casc3	61	38.060	Eptatretus_burgeri
ENSSDUG00000016893	casc3	68	53.968	ENSEASG00005002909	CASC3	84	52.381	Equus_asinus_asinus
ENSSDUG00000016893	casc3	95	56.574	ENSELUG00000015093	casc3	100	56.654	Esox_lucius
ENSSDUG00000016893	casc3	86	41.803	ENSFALG00000000412	CASC3	88	47.710	Ficedula_albicollis
ENSSDUG00000016893	casc3	95	72.015	ENSFHEG00000015793	casc3	100	71.171	Fundulus_heteroclitus
ENSSDUG00000016893	casc3	88	43.425	ENSGALG00000031813	CASC3	85	50.456	Gallus_gallus
ENSSDUG00000016893	casc3	94	74.515	ENSGAFG00000017148	casc3	86	73.454	Gambusia_affinis
ENSSDUG00000016893	casc3	55	68.707	ENSGAGG00000008432	CASC3	72	75.410	Gopherus_agassizii
ENSSDUG00000016893	casc3	95	78.900	ENSHBUG00000013155	casc3	100	77.436	Haplochromis_burtoni
ENSSDUG00000016893	casc3	95	62.853	ENSHCOG00000002664	casc3	95	61.238	Hippocampus_comes
ENSSDUG00000016893	casc3	95	43.321	ENSSTOG00000006374	CASC3	85	49.550	Ictidomys_tridecemlineatus
ENSSDUG00000016893	casc3	95	43.854	ENSJJAG00000023525	Casc3	70	58.333	Jaculus_jaculus
ENSSDUG00000016893	casc3	88	75.946	ENSKMAG00000019507	casc3	99	74.764	Kryptolebias_marmoratus
ENSSDUG00000016893	casc3	91	71.338	ENSLBEG00000005435	casc3	100	73.684	Labrus_bergylta
ENSSDUG00000016893	casc3	95	39.061	ENSLACG00000013200	CASC3	74	45.378	Latimeria_chalumnae
ENSSDUG00000016893	casc3	94	50.189	ENSLOCG00000013518	casc3	63	65.403	Lepisosteus_oculatus
ENSSDUG00000016893	casc3	75	49.845	ENSLAFG00000000606	CASC3	84	48.476	Loxodonta_africana
ENSSDUG00000016893	casc3	68	54.582	ENSMFAG00000041496	CASC3	84	52.988	Macaca_fascicularis
ENSSDUG00000016893	casc3	91	78.117	ENSMAMG00000005235	casc3	96	76.127	Mastacembelus_armatus
ENSSDUG00000016893	casc3	95	78.772	ENSMZEG00005003815	casc3	100	77.308	Maylandia_zebra
ENSSDUG00000016893	casc3	64	52.915	ENSMGAG00000013247	CASC3	87	49.387	Meleagris_gallopavo
ENSSDUG00000016893	casc3	88	44.292	ENSMOCG00000013644	Casc3	76	53.968	Microtus_ochrogaster
ENSSDUG00000016893	casc3	95	77.995	ENSMMOG00000014339	casc3	100	76.832	Mola_mola
ENSSDUG00000016893	casc3	70	50.000	ENSMODG00000013044	CASC3	72	51.095	Monodelphis_domestica
ENSSDUG00000016893	casc3	60	98.000	ENSMALG00000019771	casc3	80	98.000	Monopterus_albus
ENSSDUG00000016893	casc3	74	49.844	ENSMLUG00000010520	CASC3	83	48.598	Myotis_lucifugus
ENSSDUG00000016893	casc3	77	58.696	ENSMEUG00000015662	CASC3	64	53.939	Notamacropus_eugenii
ENSSDUG00000016893	casc3	95	78.981	ENSONIG00000009337	casc3	100	78.471	Oreochromis_niloticus
ENSSDUG00000016893	casc3	95	65.977	ENSORLG00000023125	casc3	100	65.330	Oryzias_latipes
ENSSDUG00000016893	casc3	75	51.543	ENSOARG00000013239	CASC3	84	49.390	Ovis_aries
ENSSDUG00000016893	casc3	94	70.232	ENSPFOG00000017632	casc3	96	72.056	Poecilia_formosa
ENSSDUG00000016893	casc3	95	74.520	ENSPLAG00000005268	casc3	100	74.520	Poecilia_latipinna
ENSSDUG00000016893	casc3	70	89.062	ENSPREG00000011856	casc3	92	89.062	Poecilia_reticulata
ENSSDUG00000016893	casc3	74	50.637	ENSPPYG00000008467	CASC3	85	51.057	Pongo_abelii
ENSSDUG00000016893	casc3	95	79.028	ENSPNYG00000011962	casc3	100	77.564	Pundamilia_nyererei
ENSSDUG00000016893	casc3	94	56.642	ENSPNAG00000015928	casc3	98	53.383	Pygocentrus_nattereri
ENSSDUG00000016893	casc3	61	62.360	ENSRNOG00000009716	Casc3	84	54.582	Rattus_norvegicus
ENSSDUG00000016893	casc3	77	44.828	ENSSHAG00000013338	CASC3	50	50.000	Sarcophilus_harrisii
ENSSDUG00000016893	casc3	95	73.325	ENSSMAG00000016096	casc3	100	72.873	Scophthalmus_maximus
ENSSDUG00000016893	casc3	80	91.785	ENSSLDG00000020308	casc3	99	92.918	Seriola_lalandi_dorsalis
ENSSDUG00000016893	casc3	53	59.091	ENSSARG00000010378	CASC3	64	65.753	Sorex_araneus
ENSSDUG00000016893	casc3	95	79.849	ENSSPAG00000023008	casc3	100	76.293	Stegastes_partitus
ENSSDUG00000016893	casc3	67	54.959	ENSSSCG00000017477	CASC3	82	51.653	Sus_scrofa
ENSSDUG00000016893	casc3	55	55.970	ENSTGUG00000002300	CASC3	61	48.649	Taeniopygia_guttata
ENSSDUG00000016893	casc3	91	68.984	ENSTRUG00000000673	casc3	95	67.292	Takifugu_rubripes
ENSSDUG00000016893	casc3	95	66.317	ENSTNIG00000003208	casc3	100	63.780	Tetraodon_nigroviridis
ENSSDUG00000016893	casc3	95	42.643	ENSUAMG00000015116	CASC3	84	51.587	Ursus_americanus
ENSSDUG00000016893	casc3	87	43.333	ENSUMAG00000017697	CASC3	90	61.818	Ursus_maritimus
ENSSDUG00000016893	casc3	95	74.587	ENSXMAG00000013937	casc3	100	73.952	Xiphophorus_maculatus