EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000017244 (Gene tree)
Gene ID: 111224837
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 21754 bases
Position: chrBDQW01000138.1:3222884-3244637
Accession: 111224837
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000023819	Upf2	PF04050.14	8.9e-33	1	1
ENSSDUP00000023781	Upf2	PF04050.14	1e-32	1	1
ENSSDUP00000023866	Upf2	PF04050.14	1.2e-32	1	1
ENSSDUP00000023866	MIF4G	PF02854.19	5e-76	1	3
ENSSDUP00000023866	MIF4G	PF02854.19	5e-76	2	3
ENSSDUP00000023866	MIF4G	PF02854.19	5e-76	3	3
ENSSDUP00000023781	MIF4G	PF02854.19	6.1e-76	1	3
ENSSDUP00000023781	MIF4G	PF02854.19	6.1e-76	2	3
ENSSDUP00000023781	MIF4G	PF02854.19	6.1e-76	3	3
ENSSDUP00000023819	MIF4G	PF02854.19	6.9e-76	1	3
ENSSDUP00000023819	MIF4G	PF02854.19	6.9e-76	2	3
ENSSDUP00000023819	MIF4G	PF02854.19	6.9e-76	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000024260	UPF2-202	4947	-	ENSSDUP00000023819	1323 (aa)	-	-
ENSSDUT00000024225	UPF2-201	5402	XM_022749510	ENSSDUP00000023781	1287 (aa)	XP_022605231	UPI000BBE4D36
ENSSDUT00000024310	UPF2-203	3690	-	ENSSDUP00000023866	1229 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000017244's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03013	RNA transport	KEGG
sdu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000017244's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000017244	UPF2	99	82.619	ENSG00000151461	UPF2	100	82.151	Homo_sapiens
ENSSDUG00000017244	UPF2	100	93.564	ENSAPOG00000015837	UPF2	100	93.961	Acanthochromis_polyacanthus
ENSSDUG00000017244	UPF2	99	83.229	ENSAMEG00000004586	UPF2	100	83.229	Ailuropoda_melanoleuca
ENSSDUG00000017244	UPF2	99	96.708	ENSACIG00000018078	UPF2	100	96.708	Amphilophus_citrinellus
ENSSDUG00000017244	UPF2	99	97.492	ENSAOCG00000016766	UPF2	100	97.492	Amphiprion_ocellaris
ENSSDUG00000017244	UPF2	99	97.571	ENSAPEG00000019084	UPF2	100	97.571	Amphiprion_percula
ENSSDUG00000017244	UPF2	99	96.873	ENSATEG00000021677	UPF2	99	96.873	Anabas_testudineus
ENSSDUG00000017244	UPF2	100	79.968	ENSAPLG00000010287	UPF2	90	84.609	Anas_platyrhynchos
ENSSDUG00000017244	UPF2	99	83.073	ENSACAG00000009259	UPF2	100	82.761	Anolis_carolinensis
ENSSDUG00000017244	UPF2	97	76.683	ENSANAG00000028451	UPF2	93	78.943	Aotus_nancymaae
ENSSDUG00000017244	UPF2	99	96.401	ENSACLG00000012696	UPF2	100	96.401	Astatotilapia_calliptera
ENSSDUG00000017244	UPF2	99	89.523	ENSAMXG00000013700	UPF2	100	88.777	Astyanax_mexicanus
ENSSDUG00000017244	UPF2	99	83.151	ENSBTAG00000000288	UPF2	100	82.995	Bos_taurus
ENSSDUG00000017244	UPF2	99	82.293	ENSCJAG00000020685	UPF2	100	81.669	Callithrix_jacchus
ENSSDUG00000017244	UPF2	99	83.307	ENSCAFG00000004839	UPF2	100	83.151	Canis_familiaris
ENSSDUG00000017244	UPF2	100	83.887	ENSCAFG00020005882	UPF2	100	83.239	Canis_lupus_dingo
ENSSDUG00000017244	UPF2	99	83.307	ENSCHIG00000020359	UPF2	100	83.073	Capra_hircus
ENSSDUG00000017244	UPF2	99	82.839	ENSTSYG00000000935	UPF2	97	85.955	Carlito_syrichta
ENSSDUG00000017244	UPF2	91	74.765	ENSCAPG00000016658	UPF2	95	74.317	Cavia_aperea
ENSSDUG00000017244	UPF2	98	80.189	ENSCPOG00000008809	UPF2	92	83.020	Cavia_porcellus
ENSSDUG00000017244	UPF2	100	75.374	ENSCCAG00000035991	UPF2	100	75.507	Cebus_capucinus
ENSSDUG00000017244	UPF2	99	82.775	ENSCATG00000032679	UPF2	100	82.307	Cercocebus_atys
ENSSDUG00000017244	UPF2	99	82.279	ENSCLAG00000011434	UPF2	100	82.123	Chinchilla_lanigera
ENSSDUG00000017244	UPF2	99	82.775	ENSCSAG00000013372	UPF2	100	82.307	Chlorocebus_sabaeus
ENSSDUG00000017244	UPF2	80	89.579	ENSCHOG00000000422	UPF2	79	91.315	Choloepus_hoffmanni
ENSSDUG00000017244	UPF2	99	81.064	ENSCPBG00000027823	UPF2	100	80.844	Chrysemys_picta_bellii
ENSSDUG00000017244	UPF2	78	49.609	ENSCSAVG00000007772	-	99	48.715	Ciona_savignyi
ENSSDUG00000017244	UPF2	100	77.498	ENSCANG00000040396	UPF2	100	77.457	Colobus_angolensis_palliatus
ENSSDUG00000017244	UPF2	99	82.683	ENSCGRG00001019347	Upf2	100	82.748	Cricetulus_griseus_chok1gshd
ENSSDUG00000017244	UPF2	99	82.683	ENSCGRG00000017993	Upf2	100	82.748	Cricetulus_griseus_crigri
ENSSDUG00000017244	UPF2	99	88.782	ENSCSEG00000003520	UPF2	99	88.221	Cynoglossus_semilaevis
ENSSDUG00000017244	UPF2	98	94.554	ENSCVAG00000006167	UPF2	100	94.475	Cyprinodon_variegatus
ENSSDUG00000017244	UPF2	99	82.995	ENSDNOG00000018160	UPF2	100	82.697	Dasypus_novemcinctus
ENSSDUG00000017244	UPF2	99	82.683	ENSDORG00000002478	Upf2	100	82.683	Dipodomys_ordii
ENSSDUG00000017244	UPF2	89	36.522	FBgn0029992	Upf2	95	36.060	Drosophila_melanogaster
ENSSDUG00000017244	UPF2	72	92.647	ENSETEG00000011583	-	62	92.647	Echinops_telfairi
ENSSDUG00000017244	UPF2	67	71.523	ENSEBUG00000012448	-	93	67.862	Eptatretus_burgeri
ENSSDUG00000017244	UPF2	99	82.358	ENSEASG00005019274	UPF2	100	81.787	Equus_asinus_asinus
ENSSDUG00000017244	UPF2	99	82.358	ENSECAG00000017022	UPF2	100	82.201	Equus_caballus
ENSSDUG00000017244	UPF2	81	74.528	ENSEEUG00000007819	UPF2	69	87.565	Erinaceus_europaeus
ENSSDUG00000017244	UPF2	99	88.924	ENSELUG00000012014	UPF2	100	89.704	Esox_lucius
ENSSDUG00000017244	UPF2	100	85.635	ENSFCAG00000005785	UPF2	100	82.995	Felis_catus
ENSSDUG00000017244	UPF2	99	83.579	ENSFALG00000001889	UPF2	98	83.269	Ficedula_albicollis
ENSSDUG00000017244	UPF2	99	81.577	ENSFDAG00000014348	UPF2	100	81.811	Fukomys_damarensis
ENSSDUG00000017244	UPF2	98	94.866	ENSFHEG00000009826	UPF2	100	94.866	Fundulus_heteroclitus
ENSSDUG00000017244	UPF2	90	89.301	ENSGMOG00000005557	UPF2	100	88.638	Gadus_morhua
ENSSDUG00000017244	UPF2	99	84.100	ENSGALG00000033772	UPF2	100	83.670	Gallus_gallus
ENSSDUG00000017244	UPF2	99	94.044	ENSGAFG00000020867	UPF2	100	94.044	Gambusia_affinis
ENSSDUG00000017244	UPF2	99	94.136	ENSGACG00000001080	UPF2	100	94.136	Gasterosteus_aculeatus
ENSSDUG00000017244	UPF2	99	82.527	ENSGAGG00000002700	UPF2	100	82.229	Gopherus_agassizii
ENSSDUG00000017244	UPF2	99	82.619	ENSGGOG00000001479	UPF2	100	82.151	Gorilla_gorilla
ENSSDUG00000017244	UPF2	99	96.473	ENSHBUG00000004249	UPF2	100	96.473	Haplochromis_burtoni
ENSSDUG00000017244	UPF2	99	81.811	ENSHGLG00000015176	-	100	81.655	Heterocephalus_glaber_female
ENSSDUG00000017244	UPF2	99	72.791	ENSHGLG00000003822	-	99	72.557	Heterocephalus_glaber_female
ENSSDUG00000017244	UPF2	99	79.437	ENSHGLG00100010036	UPF2	100	77.778	Heterocephalus_glaber_male
ENSSDUG00000017244	UPF2	100	91.409	ENSHCOG00000004025	UPF2	100	91.409	Hippocampus_comes
ENSSDUG00000017244	UPF2	99	88.056	ENSIPUG00000015524	UPF2	100	86.339	Ictalurus_punctatus
ENSSDUG00000017244	UPF2	99	82.839	ENSSTOG00000013075	UPF2	100	82.839	Ictidomys_tridecemlineatus
ENSSDUG00000017244	UPF2	99	79.547	ENSJJAG00000004913	Upf2	100	81.981	Jaculus_jaculus
ENSSDUG00000017244	UPF2	98	94.558	ENSKMAG00000001071	UPF2	100	94.479	Kryptolebias_marmoratus
ENSSDUG00000017244	UPF2	82	93.472	ENSLBEG00000000728	-	94	92.857	Labrus_bergylta
ENSSDUG00000017244	UPF2	100	95.606	ENSLBEG00000016394	-	100	95.606	Labrus_bergylta
ENSSDUG00000017244	UPF2	99	76.869	ENSLACG00000015945	UPF2	93	84.831	Latimeria_chalumnae
ENSSDUG00000017244	UPF2	98	88.740	ENSLOCG00000015698	UPF2	100	88.425	Lepisosteus_oculatus
ENSSDUG00000017244	UPF2	99	82.775	ENSMFAG00000043865	UPF2	100	82.307	Macaca_fascicularis
ENSSDUG00000017244	UPF2	99	82.775	ENSMMUG00000008241	UPF2	100	82.307	Macaca_mulatta
ENSSDUG00000017244	UPF2	82	83.890	ENSMNEG00000008062	UPF2	99	83.202	Macaca_nemestrina
ENSSDUG00000017244	UPF2	100	79.921	ENSMLEG00000036120	UPF2	100	79.685	Mandrillus_leucophaeus
ENSSDUG00000017244	UPF2	99	96.792	ENSMAMG00000018276	UPF2	100	96.792	Mastacembelus_armatus
ENSSDUG00000017244	UPF2	99	96.401	ENSMZEG00005021595	UPF2	100	96.401	Maylandia_zebra
ENSSDUG00000017244	UPF2	99	83.555	ENSMGAG00000004573	UPF2	99	83.425	Meleagris_gallopavo
ENSSDUG00000017244	UPF2	99	80.655	ENSMAUG00000016512	Upf2	100	80.718	Mesocricetus_auratus
ENSSDUG00000017244	UPF2	100	83.887	ENSMICG00000001716	UPF2	100	82.753	Microcebus_murinus
ENSSDUG00000017244	UPF2	99	81.967	ENSMOCG00000008263	Upf2	100	81.797	Microtus_ochrogaster
ENSSDUG00000017244	UPF2	100	94.426	ENSMMOG00000006528	UPF2	100	94.265	Mola_mola
ENSSDUG00000017244	UPF2	99	81.123	ENSMODG00000016794	UPF2	100	83.151	Monodelphis_domestica
ENSSDUG00000017244	UPF2	100	94.586	ENSMALG00000002663	UPF2	100	95.133	Monopterus_albus
ENSSDUG00000017244	UPF2	99	82.605	MGP_CAROLIEiJ_G0023157	Upf2	99	85.043	Mus_caroli
ENSSDUG00000017244	UPF2	99	82.917	ENSMUSG00000043241	Upf2	100	83.060	Mus_musculus
ENSSDUG00000017244	UPF2	99	82.995	MGP_PahariEiJ_G0019217	Upf2	100	83.774	Mus_pahari
ENSSDUG00000017244	UPF2	99	83.151	MGP_SPRETEiJ_G0024075	Upf2	100	83.774	Mus_spretus
ENSSDUG00000017244	UPF2	99	83.073	ENSMPUG00000001064	UPF2	100	82.917	Mustela_putorius_furo
ENSSDUG00000017244	UPF2	99	82.527	ENSMLUG00000000228	UPF2	100	82.243	Myotis_lucifugus
ENSSDUG00000017244	UPF2	99	96.479	ENSNBRG00000013629	UPF2	100	96.479	Neolamprologus_brichardi
ENSSDUG00000017244	UPF2	99	82.697	ENSNLEG00000012058	UPF2	100	82.229	Nomascus_leucogenys
ENSSDUG00000017244	UPF2	71	94.366	ENSOPRG00000006801	-	73	94.366	Ochotona_princeps
ENSSDUG00000017244	UPF2	99	81.811	ENSODEG00000001290	UPF2	100	81.464	Octodon_degus
ENSSDUG00000017244	UPF2	99	95.618	ENSONIG00000017991	UPF2	100	95.618	Oreochromis_niloticus
ENSSDUG00000017244	UPF2	99	81.868	ENSOCUG00000006230	UPF2	100	80.700	Oryctolagus_cuniculus
ENSSDUG00000017244	UPF2	99	93.109	ENSORLG00000017189	UPF2	100	93.657	Oryzias_latipes
ENSSDUG00000017244	UPF2	99	93.187	ENSORLG00020005969	UPF2	100	93.735	Oryzias_latipes_hni
ENSSDUG00000017244	UPF2	99	93.187	ENSORLG00015005713	UPF2	100	93.735	Oryzias_latipes_hsok
ENSSDUG00000017244	UPF2	99	90.345	ENSOMEG00000023420	UPF2	99	89.535	Oryzias_melastigma
ENSSDUG00000017244	UPF2	99	83.229	ENSOGAG00000005796	UPF2	100	82.683	Otolemur_garnettii
ENSSDUG00000017244	UPF2	99	83.178	ENSOARG00000014587	UPF2	100	82.995	Ovis_aries
ENSSDUG00000017244	UPF2	100	79.291	ENSPPAG00000037953	UPF2	100	79.001	Pan_paniscus
ENSSDUG00000017244	UPF2	99	83.151	ENSPPRG00000000690	UPF2	100	82.995	Panthera_pardus
ENSSDUG00000017244	UPF2	99	83.151	ENSPTIG00000008867	UPF2	100	82.995	Panthera_tigris_altaica
ENSSDUG00000017244	UPF2	99	82.619	ENSPTRG00000002291	UPF2	100	82.151	Pan_troglodytes
ENSSDUG00000017244	UPF2	99	82.775	ENSPANG00000023399	UPF2	100	82.307	Papio_anubis
ENSSDUG00000017244	UPF2	99	87.997	ENSPKIG00000025502	UPF2	100	86.651	Paramormyrops_kingsleyae
ENSSDUG00000017244	UPF2	61	82.082	ENSPSIG00000015158	UPF2	96	77.865	Pelodiscus_sinensis
ENSSDUG00000017244	UPF2	99	89.874	ENSPMGG00000005259	UPF2	100	90.424	Periophthalmus_magnuspinnatus
ENSSDUG00000017244	UPF2	93	76.657	ENSPEMG00000015731	Upf2	99	76.657	Peromyscus_maniculatus_bairdii
ENSSDUG00000017244	UPF2	99	82.917	ENSPCIG00000006656	UPF2	100	82.802	Phascolarctos_cinereus
ENSSDUG00000017244	UPF2	99	94.436	ENSPFOG00000017118	UPF2	100	94.436	Poecilia_formosa
ENSSDUG00000017244	UPF2	99	94.514	ENSPLAG00000005094	UPF2	100	94.514	Poecilia_latipinna
ENSSDUG00000017244	UPF2	99	94.357	ENSPMEG00000017009	UPF2	100	94.357	Poecilia_mexicana
ENSSDUG00000017244	UPF2	99	93.014	ENSPREG00000021880	UPF2	100	92.857	Poecilia_reticulata
ENSSDUG00000017244	UPF2	65	84.935	ENSPPYG00000002089	-	100	84.698	Pongo_abelii
ENSSDUG00000017244	UPF2	99	70.827	ENSPCAG00000000684	UPF2	100	70.827	Procavia_capensis
ENSSDUG00000017244	UPF2	100	82.206	ENSPCOG00000021656	UPF2	100	81.899	Propithecus_coquereli
ENSSDUG00000017244	UPF2	99	76.617	ENSPVAG00000017286	UPF2	100	76.558	Pteropus_vampyrus
ENSSDUG00000017244	UPF2	99	93.417	ENSPNYG00000017096	UPF2	100	93.417	Pundamilia_nyererei
ENSSDUG00000017244	UPF2	99	89.617	ENSPNAG00000009357	UPF2	100	89.617	Pygocentrus_nattereri
ENSSDUG00000017244	UPF2	99	78.460	ENSRNOG00000023593	Upf2	100	94.444	Rattus_norvegicus
ENSSDUG00000017244	UPF2	99	81.484	ENSRBIG00000037780	UPF2	100	81.250	Rhinopithecus_bieti
ENSSDUG00000017244	UPF2	99	82.541	ENSRROG00000043547	UPF2	100	82.229	Rhinopithecus_roxellana
ENSSDUG00000017244	UPF2	100	81.401	ENSSBOG00000020012	UPF2	100	81.591	Saimiri_boliviensis_boliviensis
ENSSDUG00000017244	UPF2	99	86.807	ENSSFOG00015023788	upf2	100	86.807	Scleropages_formosus
ENSSDUG00000017244	UPF2	89	93.576	ENSSMAG00000007637	UPF2	100	92.785	Scophthalmus_maximus
ENSSDUG00000017244	UPF2	100	99.193	ENSSLDG00000016866	UPF2	100	99.193	Seriola_lalandi_dorsalis
ENSSDUG00000017244	UPF2	99	81.825	ENSSARG00000008615	UPF2	100	81.981	Sorex_araneus
ENSSDUG00000017244	UPF2	100	81.547	ENSSPUG00000014544	UPF2	99	80.964	Sphenodon_punctatus
ENSSDUG00000017244	UPF2	68	84.800	ENSSSCG00000011117	-	99	84.800	Sus_scrofa
ENSSDUG00000017244	UPF2	99	83.737	ENSTGUG00000002163	-	100	83.581	Taeniopygia_guttata
ENSSDUG00000017244	UPF2	100	93.173	ENSTRUG00000007519	UPF2	100	93.095	Takifugu_rubripes
ENSSDUG00000017244	UPF2	99	89.844	ENSTNIG00000004453	UPF2	100	87.500	Tetraodon_nigroviridis
ENSSDUG00000017244	UPF2	92	74.391	ENSTBEG00000012679	UPF2	93	75.483	Tupaia_belangeri
ENSSDUG00000017244	UPF2	99	82.045	ENSTTRG00000016388	UPF2	100	81.811	Tursiops_truncatus
ENSSDUG00000017244	UPF2	90	94.382	ENSUAMG00000023560	UPF2	99	94.382	Ursus_americanus
ENSSDUG00000017244	UPF2	99	83.229	ENSUMAG00000012953	UPF2	95	83.073	Ursus_maritimus
ENSSDUG00000017244	UPF2	85	96.774	ENSVPAG00000006763	UPF2	86	96.774	Vicugna_pacos
ENSSDUG00000017244	UPF2	99	83.307	ENSVVUG00000006166	UPF2	100	83.073	Vulpes_vulpes
ENSSDUG00000017244	UPF2	99	78.907	ENSXETG00000033103	UPF2	91	84.728	Xenopus_tropicalis
ENSSDUG00000017244	UPF2	99	94.505	ENSXCOG00000011604	UPF2	100	94.505	Xiphophorus_couchianus
ENSSDUG00000017244	UPF2	99	94.514	ENSXMAG00000017209	UPF2	100	94.514	Xiphophorus_maculatus