EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000017356 (Gene tree)
Gene ID: 111217535
Gene Symbol: -
Alias: -
Full Name: ADP-ribosylation factor 1-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 8854 bases
Position: chrBDQW01000044.1:535913-544766
Accession: 111217535
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000023889	MMR_HSR1	PF01926.23	4.2e-05	1	1
ENSSDUP00000023877	MMR_HSR1	PF01926.23	6.4e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000024323	-	663	-	ENSSDUP00000023877	220 (aa)	-	-
ENSSDUT00000024335	-	2723	XM_022739449	ENSSDUP00000023889	180 (aa)	XP_022595170	UPI000BBE0CCE

Gene Model

Click here to download ENSSDUG00000017356's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu04144	Endocytosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000017356's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000017356	-	100	92.265	ENSSDUG00000013041	-	100	92.265
ENSSDUG00000017356	-	84	47.059	ENSSDUG00000004422	arl11	90	47.059
ENSSDUG00000017356	-	54	55.556	ENSSDUG00000023723	-	88	55.556
ENSSDUG00000017356	-	98	47.159	ENSSDUG00000022640	arl5c	98	47.159
ENSSDUG00000017356	-	88	43.558	ENSSDUG00000013427	-	89	43.558
ENSSDUG00000017356	-	88	30.409	ENSSDUG00000018746	srprb	58	30.409
ENSSDUG00000017356	-	99	90.503	ENSSDUG00000017254	-	99	90.503
ENSSDUG00000017356	-	94	32.044	ENSSDUG00000019629	-	91	32.044
ENSSDUG00000017356	-	97	82.759	ENSSDUG00000005105	arf5	97	82.759
ENSSDUG00000017356	-	54	37.113	ENSSDUG00000010773	sar1ab	69	37.113
ENSSDUG00000017356	-	97	50.286	ENSSDUG00000007515	ARL5B	98	50.286
ENSSDUG00000017356	-	63	30.081	ENSSDUG00000016888	rab1ab	54	30.081
ENSSDUG00000017356	-	92	47.590	ENSSDUG00000013976	arl3	91	47.590
ENSSDUG00000017356	-	88	46.341	ENSSDUG00000000586	arl4aa	84	45.238
ENSSDUG00000017356	-	98	49.718	ENSSDUG00000012261	arl5a	99	49.718
ENSSDUG00000017356	-	55	38.384	ENSSDUG00000020926	sar1b	79	38.384
ENSSDUG00000017356	-	100	93.923	ENSSDUG00000007780	arf2b	100	93.923
ENSSDUG00000017356	-	96	31.609	ENSSDUG00000012529	arl8bb	94	31.609
ENSSDUG00000017356	-	63	30.081	ENSSDUG00000022535	RAB1A	58	30.081
ENSSDUG00000017356	-	96	67.052	ENSSDUG00000020599	-	98	67.232
ENSSDUG00000017356	-	88	45.181	ENSSDUG00000017586	-	82	46.988
ENSSDUG00000017356	-	94	35.165	ENSSDUG00000007121	arfrp1	89	35.165
ENSSDUG00000017356	-	88	43.902	ENSSDUG00000010935	arl4d	82	43.902
ENSSDUG00000017356	-	84	34.302	ENSSDUG00000006652	ARL6	86	36.646
ENSSDUG00000017356	-	93	60.119	ENSSDUG00000013898	arl1	95	60.119
ENSSDUG00000017356	-	91	44.785	ENSSDUG00000004762	-	88	45.625
ENSSDUG00000017356	-	100	92.265	ENSSDUG00000007524	arf3b	98	92.265
ENSSDUG00000017356	-	96	32.184	ENSSDUG00000021055	arl8ba	78	32.184
ENSSDUG00000017356	-	93	44.910	ENSSDUG00000003943	arl3l2	89	44.910
ENSSDUG00000017356	-	96	47.753	ENSSDUG00000012868	arl4cb	91	47.753
ENSSDUG00000017356	-	96	82.659	ENSSDUG00000014675	-	96	82.659
ENSSDUG00000017356	-	96	47.977	ENSSDUG00000021397	arl2	93	47.977
ENSSDUG00000017356	-	92	32.530	ENSSDUG00000000578	arl8a	89	32.530
ENSSDUG00000017356	-	95	44.944	ENSSDUG00000011151	-	89	44.944

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000017356	-	100	96.667	ENSACIG00000012192	-	100	96.667	Amphilophus_citrinellus
ENSSDUG00000017356	-	84	98.013	ENSAOCG00000001275	-	88	98.013	Amphiprion_ocellaris
ENSSDUG00000017356	-	100	98.333	ENSAPEG00000016909	-	100	98.333	Amphiprion_percula
ENSSDUG00000017356	-	100	98.333	ENSATEG00000003174	-	100	98.333	Anabas_testudineus
ENSSDUG00000017356	-	100	95.000	ENSACLG00000004123	-	100	95.000	Astatotilapia_calliptera
ENSSDUG00000017356	-	100	93.370	ENSAMXG00000019845	arf1	100	93.370	Astyanax_mexicanus
ENSSDUG00000017356	-	100	97.222	ENSCVAG00000013374	-	100	97.222	Cyprinodon_variegatus
ENSSDUG00000017356	-	100	93.370	ENSDARG00000009484	arf1	100	93.370	Danio_rerio
ENSSDUG00000017356	-	100	93.370	ENSELUG00000022533	arf1	80	92.935	Esox_lucius
ENSSDUG00000017356	-	100	96.667	ENSFHEG00000005859	-	100	96.667	Fundulus_heteroclitus
ENSSDUG00000017356	-	96	87.283	ENSGMOG00000000429	arf1	95	87.283	Gadus_morhua
ENSSDUG00000017356	-	100	97.222	ENSGAFG00000018151	-	100	97.222	Gambusia_affinis
ENSSDUG00000017356	-	100	86.667	ENSGACG00000014195	-	97	86.667	Gasterosteus_aculeatus
ENSSDUG00000017356	-	100	95.000	ENSHBUG00000002636	-	100	95.000	Haplochromis_burtoni
ENSSDUG00000017356	-	100	92.818	ENSIPUG00000006311	arf1	100	92.818	Ictalurus_punctatus
ENSSDUG00000017356	-	100	95.000	ENSKMAG00000018315	-	100	95.000	Kryptolebias_marmoratus
ENSSDUG00000017356	-	99	89.385	ENSLBEG00000001998	arf1	99	89.385	Labrus_bergylta
ENSSDUG00000017356	-	99	88.202	ENSLBEG00000023263	-	94	92.353	Labrus_bergylta
ENSSDUG00000017356	-	100	97.778	ENSMAMG00000001553	-	100	97.778	Mastacembelus_armatus
ENSSDUG00000017356	-	100	95.000	ENSMZEG00005022594	-	100	95.000	Maylandia_zebra
ENSSDUG00000017356	-	100	98.333	ENSMALG00000004269	-	100	98.333	Monopterus_albus
ENSSDUG00000017356	-	100	95.000	ENSNBRG00000016455	-	100	95.000	Neolamprologus_brichardi
ENSSDUG00000017356	-	100	95.000	ENSONIG00000001286	-	100	95.000	Oreochromis_niloticus
ENSSDUG00000017356	-	100	97.222	ENSORLG00000023270	-	100	97.222	Oryzias_latipes
ENSSDUG00000017356	-	100	96.667	ENSORLG00020006712	-	100	96.667	Oryzias_latipes_hni
ENSSDUG00000017356	-	100	97.222	ENSORLG00015019836	-	100	97.222	Oryzias_latipes_hsok
ENSSDUG00000017356	-	100	97.222	ENSOMEG00000023784	-	100	97.222	Oryzias_melastigma
ENSSDUG00000017356	-	100	87.778	ENSPMGG00000014174	arf1	98	91.176	Periophthalmus_magnuspinnatus
ENSSDUG00000017356	-	100	92.778	ENSPMAG00000002035	arf1	100	92.778	Petromyzon_marinus
ENSSDUG00000017356	-	100	97.222	ENSPFOG00000014787	-	100	97.222	Poecilia_formosa
ENSSDUG00000017356	-	100	97.222	ENSPLAG00000001041	-	100	97.222	Poecilia_latipinna
ENSSDUG00000017356	-	100	97.222	ENSPMEG00000024077	-	100	97.222	Poecilia_mexicana
ENSSDUG00000017356	-	100	97.222	ENSPREG00000009009	-	100	97.222	Poecilia_reticulata
ENSSDUG00000017356	-	100	95.000	ENSPNYG00000009472	-	100	95.000	Pundamilia_nyererei
ENSSDUG00000017356	-	94	95.266	ENSPNAG00000000098	arf1	93	95.266	Pygocentrus_nattereri
ENSSDUG00000017356	-	99	77.222	YDL192W	-	99	77.222	Saccharomyces_cerevisiae
ENSSDUG00000017356	-	99	77.095	YDL137W	-	99	77.095	Saccharomyces_cerevisiae
ENSSDUG00000017356	-	100	91.111	ENSSMAG00000006125	-	100	91.111	Scophthalmus_maximus
ENSSDUG00000017356	-	100	100.000	ENSSLDG00000008504	-	100	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000017356	-	100	98.889	ENSSPAG00000011431	-	100	98.889	Stegastes_partitus
ENSSDUG00000017356	-	100	95.000	ENSTRUG00000019870	-	100	95.000	Takifugu_rubripes
ENSSDUG00000017356	-	100	95.556	ENSTNIG00000011685	-	100	95.556	Tetraodon_nigroviridis
ENSSDUG00000017356	-	100	97.222	ENSXCOG00000016687	-	98	97.222	Xiphophorus_couchianus
ENSSDUG00000017356	-	100	97.222	ENSXMAG00000009193	-	100	97.222	Xiphophorus_maculatus