EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000017422 (Gene tree)
Gene ID: 111218216
Gene Symbol: sf3b1
Alias: tst|wu:fb99f09
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 14994 bases
Position: chrBDQW01000052.1:22464379-22479372
Accession: 111218216
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000023993	SF3b1	PF08920.10	1.3e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000024442	-	5013	XM_022740398	ENSSDUP00000023993	1314 (aa)	XP_022596119	UPI000BBEF094

Gene Model

Click here to download ENSSDUG00000017422's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000017422's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000017422	sf3b1	100	93.389	ENSG00000115524	SF3B1	100	93.389	Homo_sapiens
ENSSDUG00000017422	sf3b1	100	99.011	ENSAPOG00000011894	sf3b1	100	99.011	Acanthochromis_polyacanthus
ENSSDUG00000017422	sf3b1	99	93.272	ENSAMEG00000013809	SF3B1	99	93.272	Ailuropoda_melanoleuca
ENSSDUG00000017422	sf3b1	100	97.641	ENSACIG00000020910	sf3b1	97	97.641	Amphilophus_citrinellus
ENSSDUG00000017422	sf3b1	100	99.163	ENSAOCG00000004478	sf3b1	100	99.163	Amphiprion_ocellaris
ENSSDUG00000017422	sf3b1	100	99.163	ENSAPEG00000012937	sf3b1	100	99.163	Amphiprion_percula
ENSSDUG00000017422	sf3b1	100	99.239	ENSATEG00000020435	sf3b1	100	99.239	Anabas_testudineus
ENSSDUG00000017422	sf3b1	99	93.716	ENSAPLG00000003993	SF3B1	99	93.716	Anas_platyrhynchos
ENSSDUG00000017422	sf3b1	100	93.536	ENSACAG00000009612	SF3B1	100	93.536	Anolis_carolinensis
ENSSDUG00000017422	sf3b1	100	93.389	ENSANAG00000021577	SF3B1	100	94.863	Aotus_nancymaae
ENSSDUG00000017422	sf3b1	100	97.793	ENSACLG00000023470	sf3b1	100	97.793	Astatotilapia_calliptera
ENSSDUG00000017422	sf3b1	100	97.112	ENSAMXG00000002219	sf3b1	100	97.112	Astyanax_mexicanus
ENSSDUG00000017422	sf3b1	100	93.389	ENSBTAG00000008915	SF3B1	100	93.389	Bos_taurus
ENSSDUG00000017422	sf3b1	98	65.416	WBGene00011605	sftb-1	97	65.566	Caenorhabditis_elegans
ENSSDUG00000017422	sf3b1	100	93.389	ENSCJAG00000003902	SF3B1	100	93.389	Callithrix_jacchus
ENSSDUG00000017422	sf3b1	100	93.389	ENSCAFG00000010826	SF3B1	100	93.389	Canis_familiaris
ENSSDUG00000017422	sf3b1	100	93.389	ENSCAFG00020004750	SF3B1	100	93.389	Canis_lupus_dingo
ENSSDUG00000017422	sf3b1	100	93.389	ENSCHIG00000015226	SF3B1	100	93.389	Capra_hircus
ENSSDUG00000017422	sf3b1	100	93.313	ENSTSYG00000009214	SF3B1	100	93.313	Carlito_syrichta
ENSSDUG00000017422	sf3b1	99	93.216	ENSCAPG00000006547	SF3B1	99	93.216	Cavia_aperea
ENSSDUG00000017422	sf3b1	99	93.338	ENSCPOG00000009353	SF3B1	100	93.338	Cavia_porcellus
ENSSDUG00000017422	sf3b1	100	93.389	ENSCCAG00000020506	SF3B1	100	93.389	Cebus_capucinus
ENSSDUG00000017422	sf3b1	100	93.389	ENSCATG00000035735	SF3B1	100	93.389	Cercocebus_atys
ENSSDUG00000017422	sf3b1	99	93.344	ENSCLAG00000014767	SF3B1	99	93.344	Chinchilla_lanigera
ENSSDUG00000017422	sf3b1	100	93.389	ENSCSAG00000011505	SF3B1	100	93.389	Chlorocebus_sabaeus
ENSSDUG00000017422	sf3b1	76	92.588	ENSCHOG00000009860	SF3B1	76	92.588	Choloepus_hoffmanni
ENSSDUG00000017422	sf3b1	100	93.683	ENSCPBG00000021902	SF3B1	99	94.949	Chrysemys_picta_bellii
ENSSDUG00000017422	sf3b1	68	78.081	ENSCING00000002558	-	99	78.516	Ciona_intestinalis
ENSSDUG00000017422	sf3b1	99	79.759	ENSCSAVG00000002559	-	99	79.759	Ciona_savignyi
ENSSDUG00000017422	sf3b1	100	93.389	ENSCANG00000029415	SF3B1	100	93.389	Colobus_angolensis_palliatus
ENSSDUG00000017422	sf3b1	100	93.389	ENSCGRG00001016990	Sf3b1	100	93.389	Cricetulus_griseus_chok1gshd
ENSSDUG00000017422	sf3b1	100	93.389	ENSCGRG00000005301	Sf3b1	100	93.389	Cricetulus_griseus_crigri
ENSSDUG00000017422	sf3b1	100	94.521	ENSCSEG00000003860	sf3b1	100	94.521	Cynoglossus_semilaevis
ENSSDUG00000017422	sf3b1	96	98.496	ENSCVAG00000003680	sf3b1	99	98.496	Cyprinodon_variegatus
ENSSDUG00000017422	sf3b1	100	95.741	ENSDARG00000056138	sf3b1	100	95.741	Danio_rerio
ENSSDUG00000017422	sf3b1	100	93.318	ENSDNOG00000011754	SF3B1	100	93.318	Dasypus_novemcinctus
ENSSDUG00000017422	sf3b1	99	91.424	ENSDORG00000002399	Sf3b1	100	91.348	Dipodomys_ordii
ENSSDUG00000017422	sf3b1	100	75.880	FBgn0031266	Sf3b1	100	75.880	Drosophila_melanogaster
ENSSDUG00000017422	sf3b1	83	92.202	ENSETEG00000009188	SF3B1	100	92.202	Echinops_telfairi
ENSSDUG00000017422	sf3b1	99	85.584	ENSEBUG00000004325	sf3b1	100	88.630	Eptatretus_burgeri
ENSSDUG00000017422	sf3b1	100	93.389	ENSEASG00005020159	SF3B1	98	93.389	Equus_asinus_asinus
ENSSDUG00000017422	sf3b1	100	93.389	ENSECAG00000021657	SF3B1	98	93.389	Equus_caballus
ENSSDUG00000017422	sf3b1	87	100.000	ENSEEUG00000000836	SF3B1	81	100.000	Erinaceus_europaeus
ENSSDUG00000017422	sf3b1	100	96.450	ENSELUG00000005977	sf3b1	98	96.450	Esox_lucius
ENSSDUG00000017422	sf3b1	100	93.389	ENSFCAG00000005038	SF3B1	100	93.389	Felis_catus
ENSSDUG00000017422	sf3b1	99	93.640	ENSFALG00000004281	SF3B1	99	93.640	Ficedula_albicollis
ENSSDUG00000017422	sf3b1	100	93.389	ENSFDAG00000017510	SF3B1	100	93.389	Fukomys_damarensis
ENSSDUG00000017422	sf3b1	100	97.338	ENSFHEG00000014333	sf3b1	100	97.338	Fundulus_heteroclitus
ENSSDUG00000017422	sf3b1	100	96.583	ENSGMOG00000006773	sf3b1	100	96.583	Gadus_morhua
ENSSDUG00000017422	sf3b1	100	93.760	ENSGALG00000008038	SF3B1	100	93.760	Gallus_gallus
ENSSDUG00000017422	sf3b1	98	98.456	ENSGAFG00000000704	sf3b1	100	98.456	Gambusia_affinis
ENSSDUG00000017422	sf3b1	100	97.416	ENSGACG00000008839	sf3b1	100	97.416	Gasterosteus_aculeatus
ENSSDUG00000017422	sf3b1	100	93.046	ENSGAGG00000017478	SF3B1	100	93.046	Gopherus_agassizii
ENSSDUG00000017422	sf3b1	99	88.132	ENSGGOG00000009264	SF3B1	99	88.208	Gorilla_gorilla
ENSSDUG00000017422	sf3b1	99	97.866	ENSHBUG00000007705	sf3b1	99	97.866	Haplochromis_burtoni
ENSSDUG00000017422	sf3b1	99	93.344	ENSHGLG00000008285	-	99	93.344	Heterocephalus_glaber_female
ENSSDUG00000017422	sf3b1	99	91.354	ENSHGLG00100005535	-	99	91.354	Heterocephalus_glaber_male
ENSSDUG00000017422	sf3b1	100	97.428	ENSHCOG00000016775	sf3b1	100	97.428	Hippocampus_comes
ENSSDUG00000017422	sf3b1	100	96.578	ENSIPUG00000013171	sf3b1	100	96.578	Ictalurus_punctatus
ENSSDUG00000017422	sf3b1	100	93.389	ENSSTOG00000011034	SF3B1	100	93.389	Ictidomys_tridecemlineatus
ENSSDUG00000017422	sf3b1	99	93.318	ENSJJAG00000010903	Sf3b1	99	93.318	Jaculus_jaculus
ENSSDUG00000017422	sf3b1	100	97.648	ENSKMAG00000004009	sf3b1	100	97.648	Kryptolebias_marmoratus
ENSSDUG00000017422	sf3b1	100	97.793	ENSLBEG00000022208	sf3b1	100	97.793	Labrus_bergylta
ENSSDUG00000017422	sf3b1	99	90.266	ENSLACG00000014832	SF3B1	99	90.342	Latimeria_chalumnae
ENSSDUG00000017422	sf3b1	100	95.685	ENSLOCG00000003899	sf3b1	100	95.685	Lepisosteus_oculatus
ENSSDUG00000017422	sf3b1	100	93.389	ENSLAFG00000001956	SF3B1	100	93.389	Loxodonta_africana
ENSSDUG00000017422	sf3b1	99	93.344	ENSMMUG00000022430	SF3B1	99	93.344	Macaca_mulatta
ENSSDUG00000017422	sf3b1	100	93.389	ENSMNEG00000042333	SF3B1	100	94.863	Macaca_nemestrina
ENSSDUG00000017422	sf3b1	94	88.799	ENSMLEG00000026141	SF3B1	98	88.647	Mandrillus_leucophaeus
ENSSDUG00000017422	sf3b1	100	99.011	ENSMAMG00000010241	sf3b1	100	99.011	Mastacembelus_armatus
ENSSDUG00000017422	sf3b1	100	97.793	ENSMZEG00005021254	sf3b1	100	97.793	Maylandia_zebra
ENSSDUG00000017422	sf3b1	99	93.180	ENSMGAG00000007017	SF3B1	99	93.180	Meleagris_gallopavo
ENSSDUG00000017422	sf3b1	99	89.135	ENSMAUG00000009071	Sf3b1	99	89.135	Mesocricetus_auratus
ENSSDUG00000017422	sf3b1	100	93.389	ENSMICG00000013879	SF3B1	100	93.389	Microcebus_murinus
ENSSDUG00000017422	sf3b1	99	89.067	ENSMOCG00000000455	Sf3b1	99	89.067	Microtus_ochrogaster
ENSSDUG00000017422	sf3b1	84	98.544	ENSMMOG00000000475	sf3b1	100	98.544	Mola_mola
ENSSDUG00000017422	sf3b1	100	93.085	ENSMODG00000012275	SF3B1	100	93.085	Monodelphis_domestica
ENSSDUG00000017422	sf3b1	100	98.630	ENSMALG00000017211	sf3b1	100	98.630	Monopterus_albus
ENSSDUG00000017422	sf3b1	100	93.389	MGP_CAROLIEiJ_G0014141	Sf3b1	100	93.389	Mus_caroli
ENSSDUG00000017422	sf3b1	100	93.389	ENSMUSG00000025982	Sf3b1	100	93.389	Mus_musculus
ENSSDUG00000017422	sf3b1	100	93.389	MGP_SPRETEiJ_G0014947	Sf3b1	100	93.389	Mus_spretus
ENSSDUG00000017422	sf3b1	100	93.389	ENSMPUG00000007799	SF3B1	100	93.389	Mustela_putorius_furo
ENSSDUG00000017422	sf3b1	100	92.249	ENSMLUG00000000840	SF3B1	100	92.249	Myotis_lucifugus
ENSSDUG00000017422	sf3b1	99	93.064	ENSNGAG00000021884	-	100	93.064	Nannospalax_galili
ENSSDUG00000017422	sf3b1	100	92.711	ENSNBRG00000015816	sf3b1	100	92.776	Neolamprologus_brichardi
ENSSDUG00000017422	sf3b1	100	93.389	ENSNLEG00000006861	SF3B1	100	93.389	Nomascus_leucogenys
ENSSDUG00000017422	sf3b1	69	99.717	ENSMEUG00000015848	-	66	99.717	Notamacropus_eugenii
ENSSDUG00000017422	sf3b1	100	80.818	ENSOPRG00000008596	SF3B1	100	81.041	Ochotona_princeps
ENSSDUG00000017422	sf3b1	100	93.389	ENSODEG00000011153	-	100	93.389	Octodon_degus
ENSSDUG00000017422	sf3b1	100	97.793	ENSONIG00000013758	sf3b1	100	97.793	Oreochromis_niloticus
ENSSDUG00000017422	sf3b1	82	95.941	ENSOCUG00000012722	-	96	95.941	Oryctolagus_cuniculus
ENSSDUG00000017422	sf3b1	100	97.641	ENSORLG00000020219	sf3b1	100	97.641	Oryzias_latipes
ENSSDUG00000017422	sf3b1	100	97.641	ENSORLG00020001746	sf3b1	100	97.641	Oryzias_latipes_hni
ENSSDUG00000017422	sf3b1	64	96.323	ENSORLG00015001759	sf3b1	98	96.323	Oryzias_latipes_hsok
ENSSDUG00000017422	sf3b1	100	97.795	ENSOMEG00000019231	sf3b1	100	97.795	Oryzias_melastigma
ENSSDUG00000017422	sf3b1	100	93.389	ENSOARG00000015374	SF3B1	100	93.389	Ovis_aries
ENSSDUG00000017422	sf3b1	100	93.389	ENSPPAG00000035007	SF3B1	100	93.389	Pan_paniscus
ENSSDUG00000017422	sf3b1	100	93.389	ENSPPRG00000009090	SF3B1	100	93.389	Panthera_pardus
ENSSDUG00000017422	sf3b1	100	93.389	ENSPTIG00000021557	SF3B1	100	93.389	Panthera_tigris_altaica
ENSSDUG00000017422	sf3b1	99	85.954	ENSPTRG00000012771	SF3B1	99	85.954	Pan_troglodytes
ENSSDUG00000017422	sf3b1	100	93.389	ENSPANG00000013417	SF3B1	100	93.389	Papio_anubis
ENSSDUG00000017422	sf3b1	100	96.203	ENSPKIG00000000784	sf3b1	100	96.203	Paramormyrops_kingsleyae
ENSSDUG00000017422	sf3b1	99	92.561	ENSPSIG00000017222	SF3B1	98	92.561	Pelodiscus_sinensis
ENSSDUG00000017422	sf3b1	91	97.397	ENSPMGG00000004330	sf3b1	99	97.397	Periophthalmus_magnuspinnatus
ENSSDUG00000017422	sf3b1	99	93.344	ENSPEMG00000010699	Sf3b1	100	93.344	Peromyscus_maniculatus_bairdii
ENSSDUG00000017422	sf3b1	100	88.738	ENSPMAG00000001311	sf3b1	100	89.040	Petromyzon_marinus
ENSSDUG00000017422	sf3b1	100	93.085	ENSPCIG00000010642	SF3B1	100	93.085	Phascolarctos_cinereus
ENSSDUG00000017422	sf3b1	100	98.556	ENSPFOG00000000073	sf3b1	100	98.556	Poecilia_formosa
ENSSDUG00000017422	sf3b1	100	98.707	ENSPLAG00000002293	sf3b1	100	98.707	Poecilia_latipinna
ENSSDUG00000017422	sf3b1	100	98.631	ENSPMEG00000000446	sf3b1	98	98.631	Poecilia_mexicana
ENSSDUG00000017422	sf3b1	100	98.783	ENSPREG00000019652	sf3b1	100	98.783	Poecilia_reticulata
ENSSDUG00000017422	sf3b1	82	96.861	ENSPPYG00000013044	SF3B1	95	96.861	Pongo_abelii
ENSSDUG00000017422	sf3b1	100	93.237	ENSPCAG00000009292	SF3B1	100	93.237	Procavia_capensis
ENSSDUG00000017422	sf3b1	100	93.389	ENSPCOG00000024074	SF3B1	100	93.389	Propithecus_coquereli
ENSSDUG00000017422	sf3b1	100	93.389	ENSPVAG00000008302	SF3B1	100	93.389	Pteropus_vampyrus
ENSSDUG00000017422	sf3b1	100	97.717	ENSPNYG00000014939	sf3b1	100	97.717	Pundamilia_nyererei
ENSSDUG00000017422	sf3b1	100	96.809	ENSPNAG00000008288	sf3b1	100	96.809	Pygocentrus_nattereri
ENSSDUG00000017422	sf3b1	100	93.389	ENSRNOG00000013516	Sf3b1	100	93.389	Rattus_norvegicus
ENSSDUG00000017422	sf3b1	99	89.650	ENSRBIG00000026096	SF3B1	100	89.650	Rhinopithecus_bieti
ENSSDUG00000017422	sf3b1	100	93.389	ENSRROG00000031308	SF3B1	100	93.389	Rhinopithecus_roxellana
ENSSDUG00000017422	sf3b1	100	93.389	ENSSBOG00000020080	SF3B1	100	93.389	Saimiri_boliviensis_boliviensis
ENSSDUG00000017422	sf3b1	100	93.085	ENSSHAG00000017564	SF3B1	100	93.085	Sarcophilus_harrisii
ENSSDUG00000017422	sf3b1	100	96.654	ENSSFOG00015021535	sf3b1	100	96.654	Scleropages_formosus
ENSSDUG00000017422	sf3b1	99	98.027	ENSSMAG00000013977	sf3b1	99	98.027	Scophthalmus_maximus
ENSSDUG00000017422	sf3b1	100	99.924	ENSSLDG00000019495	sf3b1	100	99.924	Seriola_lalandi_dorsalis
ENSSDUG00000017422	sf3b1	75	98.592	ENSSARG00000007016	SF3B1	75	98.592	Sorex_araneus
ENSSDUG00000017422	sf3b1	100	93.455	ENSSPUG00000000410	SF3B1	100	93.455	Sphenodon_punctatus
ENSSDUG00000017422	sf3b1	100	99.011	ENSSPAG00000010451	sf3b1	99	99.011	Stegastes_partitus
ENSSDUG00000017422	sf3b1	91	93.006	ENSSSCG00000016075	SF3B1	100	94.863	Sus_scrofa
ENSSDUG00000017422	sf3b1	100	93.760	ENSTGUG00000010553	SF3B1	100	93.760	Taeniopygia_guttata
ENSSDUG00000017422	sf3b1	100	97.869	ENSTRUG00000015534	sf3b1	100	97.869	Takifugu_rubripes
ENSSDUG00000017422	sf3b1	84	97.107	ENSTBEG00000008714	SF3B1	93	97.107	Tupaia_belangeri
ENSSDUG00000017422	sf3b1	92	93.173	ENSTTRG00000003414	SF3B1	92	93.173	Tursiops_truncatus
ENSSDUG00000017422	sf3b1	94	83.415	ENSUAMG00000018506	SF3B1	99	97.571	Ursus_americanus
ENSSDUG00000017422	sf3b1	100	93.389	ENSUMAG00000020945	SF3B1	100	93.389	Ursus_maritimus
ENSSDUG00000017422	sf3b1	95	93.366	ENSVPAG00000005798	SF3B1	96	93.366	Vicugna_pacos
ENSSDUG00000017422	sf3b1	100	93.389	ENSVVUG00000025948	SF3B1	95	93.389	Vulpes_vulpes
ENSSDUG00000017422	sf3b1	100	92.021	ENSXETG00000013339	sf3b1	100	92.021	Xenopus_tropicalis
ENSSDUG00000017422	sf3b1	100	93.992	ENSXCOG00000018086	sf3b1	100	94.297	Xiphophorus_couchianus
ENSSDUG00000017422	sf3b1	100	98.479	ENSXMAG00000007369	sf3b1	100	98.536	Xiphophorus_maculatus