EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000017470 (Gene tree)
Gene ID: 111218077
Gene Symbol: SMARCAL1
Alias: HARP|HHARP
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 14252 bases
Position: chrBDQW01000052.1:9743543-9757794
Accession: 111218077
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000024017	ResIII	PF04851.15	2.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000024467	SMARCAL1-201	5538	XM_022740171	ENSSDUP00000024017	935 (aa)	XP_022595892	-

Gene Model

Click here to download ENSSDUG00000017470's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000017470's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000017470	SMARCAL1	95	51.116	ENSG00000138375	SMARCAL1	99	67.702	Homo_sapiens
ENSSDUG00000017470	SMARCAL1	95	84.211	ENSAPOG00000020156	SMARCAL1	97	84.211	Acanthochromis_polyacanthus
ENSSDUG00000017470	SMARCAL1	91	86.164	ENSACIG00000001500	smarcal1	97	86.164	Amphilophus_citrinellus
ENSSDUG00000017470	SMARCAL1	95	83.539	ENSAOCG00000014266	SMARCAL1	99	83.539	Amphiprion_ocellaris
ENSSDUG00000017470	SMARCAL1	95	83.763	ENSAPEG00000015861	SMARCAL1	97	90.265	Amphiprion_percula
ENSSDUG00000017470	SMARCAL1	95	84.116	ENSATEG00000020624	SMARCAL1	98	84.004	Anabas_testudineus
ENSSDUG00000017470	SMARCAL1	76	63.128	ENSAPLG00000009864	SMARCAL1	75	62.689	Anas_platyrhynchos
ENSSDUG00000017470	SMARCAL1	81	64.483	ENSACAG00000004612	SMARCAL1	70	64.483	Anolis_carolinensis
ENSSDUG00000017470	SMARCAL1	95	82.735	ENSACLG00000015990	SMARCAL1	98	82.438	Astatotilapia_calliptera
ENSSDUG00000017470	SMARCAL1	96	66.444	ENSAMXG00000003350	smarcal1	97	66.222	Astyanax_mexicanus
ENSSDUG00000017470	SMARCAL1	95	52.341	ENSCPBG00000013599	SMARCAL1	97	49.515	Chrysemys_picta_bellii
ENSSDUG00000017470	SMARCAL1	68	48.750	ENSCING00000009308	-	100	48.750	Ciona_intestinalis
ENSSDUG00000017470	SMARCAL1	95	76.111	ENSCSEG00000010785	SMARCAL1	99	76.111	Cynoglossus_semilaevis
ENSSDUG00000017470	SMARCAL1	96	74.140	ENSCVAG00000018780	SMARCAL1	98	74.140	Cyprinodon_variegatus
ENSSDUG00000017470	SMARCAL1	96	71.959	ENSELUG00000010440	-	96	72.343	Esox_lucius
ENSSDUG00000017470	SMARCAL1	94	52.660	ENSFALG00000003981	SMARCAL1	72	63.218	Ficedula_albicollis
ENSSDUG00000017470	SMARCAL1	95	76.768	ENSFHEG00000008380	SMARCAL1	97	76.768	Fundulus_heteroclitus
ENSSDUG00000017470	SMARCAL1	60	75.414	ENSGMOG00000010034	smarcal1	95	75.414	Gadus_morhua
ENSSDUG00000017470	SMARCAL1	94	52.760	ENSGALG00000011475	RPL37A	96	52.760	Gallus_gallus
ENSSDUG00000017470	SMARCAL1	83	83.925	ENSGACG00000006073	SMARCAL1	100	86.592	Gasterosteus_aculeatus
ENSSDUG00000017470	SMARCAL1	72	64.680	ENSGAGG00000015660	SMARCAL1	73	64.680	Gopherus_agassizii
ENSSDUG00000017470	SMARCAL1	95	82.287	ENSHBUG00000002973	smarcal1	98	81.991	Haplochromis_burtoni
ENSSDUG00000017470	SMARCAL1	93	72.229	ENSHCOG00000017921	smarcal1	98	71.705	Hippocampus_comes
ENSSDUG00000017470	SMARCAL1	95	75.703	ENSKMAG00000012023	SMARCAL1	99	75.703	Kryptolebias_marmoratus
ENSSDUG00000017470	SMARCAL1	84	84.750	ENSLBEG00000022915	smarcal1	100	84.750	Labrus_bergylta
ENSSDUG00000017470	SMARCAL1	89	81.988	ENSLBEG00000003493	smarcal1	100	81.988	Labrus_bergylta
ENSSDUG00000017470	SMARCAL1	94	49.947	ENSLACG00000010974	SMARCAL1	97	50.427	Latimeria_chalumnae
ENSSDUG00000017470	SMARCAL1	91	64.277	ENSLOCG00000009637	smarcal1	99	63.912	Lepisosteus_oculatus
ENSSDUG00000017470	SMARCAL1	95	82.235	ENSMAMG00000000828	SMARCAL1	99	82.235	Mastacembelus_armatus
ENSSDUG00000017470	SMARCAL1	95	82.623	ENSMZEG00005007660	SMARCAL1	98	82.327	Maylandia_zebra
ENSSDUG00000017470	SMARCAL1	94	54.167	ENSMGAG00000011658	SMARCAL1	96	54.167	Meleagris_gallopavo
ENSSDUG00000017470	SMARCAL1	86	78.997	ENSMMOG00000003842	smarcal1	94	78.997	Mola_mola
ENSSDUG00000017470	SMARCAL1	73	61.773	ENSMODG00000015544	SMARCAL1	71	61.773	Monodelphis_domestica
ENSSDUG00000017470	SMARCAL1	91	88.571	ENSNBRG00000016273	smarcal1	97	81.630	Neolamprologus_brichardi
ENSSDUG00000017470	SMARCAL1	90	51.646	ENSMEUG00000004395	SMARCAL1	99	51.474	Notamacropus_eugenii
ENSSDUG00000017470	SMARCAL1	95	82.662	ENSONIG00000009036	smarcal1	100	88.596	Oreochromis_niloticus
ENSSDUG00000017470	SMARCAL1	96	74.140	ENSORLG00000016455	SMARCAL1	97	73.282	Oryzias_latipes
ENSSDUG00000017470	SMARCAL1	95	74.247	ENSORLG00020001610	SMARCAL1	97	73.579	Oryzias_latipes_hni
ENSSDUG00000017470	SMARCAL1	95	74.499	ENSORLG00015001865	SMARCAL1	97	73.831	Oryzias_latipes_hsok
ENSSDUG00000017470	SMARCAL1	95	74.219	ENSOMEG00000001845	smarcal1	97	74.247	Oryzias_melastigma
ENSSDUG00000017470	SMARCAL1	96	73.516	ENSPMGG00000019092	SMARCAL1	98	73.736	Periophthalmus_magnuspinnatus
ENSSDUG00000017470	SMARCAL1	74	60.315	ENSPCIG00000022514	SMARCAL1	73	60.725	Phascolarctos_cinereus
ENSSDUG00000017470	SMARCAL1	95	76.174	ENSPFOG00000000560	SMARCAL1	97	76.286	Poecilia_formosa
ENSSDUG00000017470	SMARCAL1	95	76.174	ENSPMEG00000018146	SMARCAL1	97	76.286	Poecilia_mexicana
ENSSDUG00000017470	SMARCAL1	59	85.880	ENSPREG00000009591	SMARCAL1	98	85.880	Poecilia_reticulata
ENSSDUG00000017470	SMARCAL1	95	67.713	ENSPNAG00000014900	smarcal1	91	67.713	Pygocentrus_nattereri
ENSSDUG00000017470	SMARCAL1	74	57.932	ENSSHAG00000013538	SMARCAL1	73	57.932	Sarcophilus_harrisii
ENSSDUG00000017470	SMARCAL1	96	82.908	ENSSMAG00000010427	SMARCAL1	98	82.908	Scophthalmus_maximus
ENSSDUG00000017470	SMARCAL1	96	97.315	ENSSLDG00000007224	SMARCAL1	97	97.315	Seriola_lalandi_dorsalis
ENSSDUG00000017470	SMARCAL1	81	62.857	ENSSPUG00000015369	SMARCAL1	69	67.294	Sphenodon_punctatus
ENSSDUG00000017470	SMARCAL1	81	89.301	ENSSPAG00000003742	smarcal1	99	79.343	Stegastes_partitus
ENSSDUG00000017470	SMARCAL1	74	57.742	ENSSSCG00000035501	SMARCAL1	76	57.842	Sus_scrofa
ENSSDUG00000017470	SMARCAL1	73	62.261	ENSTGUG00000005079	SMARCAL1	99	62.261	Taeniopygia_guttata
ENSSDUG00000017470	SMARCAL1	95	66.704	ENSTRUG00000010701	SMARCAL1	98	66.556	Takifugu_rubripes
ENSSDUG00000017470	SMARCAL1	95	46.046	ENSTTRG00000009001	SMARCAL1	96	45.504	Tursiops_truncatus
ENSSDUG00000017470	SMARCAL1	95	58.539	ENSXETG00000000465	smarcal1	97	58.539	Xenopus_tropicalis