EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000017543 (Gene tree)
Gene ID: 111231761
Gene Symbol: smg7
Alias: fa99h10|wu:fa99h10
Full Name: SMG7%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 22615 bases
Position: chrBDQW01000315.1:380488-403102
Accession: 111231761
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000024189	EST1	PF10374.9	2.9e-26	1	1
ENSSDUP00000024245	EST1	PF10374.9	3.3e-26	1	1
ENSSDUP00000024245	EST1_DNA_bind	PF10373.9	5.5e-49	1	1
ENSSDUP00000024189	EST1_DNA_bind	PF10373.9	5.7e-49	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000024699	-	3369	-	ENSSDUP00000024245	1122 (aa)	-	-
ENSSDUT00000024645	-	7369	XM_022758997	ENSSDUP00000024189	1153 (aa)	XP_022614718	-

Gene Model

Click here to download ENSSDUG00000017543's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000017543's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000017543	smg7	99	65.850	ENSG00000116698	SMG7	86	94.340	Homo_sapiens
ENSSDUG00000017543	smg7	88	95.407	ENSAPOG00000009611	smg7	96	95.407	Acanthochromis_polyacanthus
ENSSDUG00000017543	smg7	99	65.056	ENSAMEG00000002357	SMG7	99	64.571	Ailuropoda_melanoleuca
ENSSDUG00000017543	smg7	97	86.173	ENSACIG00000015152	smg7	65	94.805	Amphilophus_citrinellus
ENSSDUG00000017543	smg7	100	95.073	ENSAOCG00000013538	smg7	100	95.073	Amphiprion_ocellaris
ENSSDUG00000017543	smg7	64	96.127	ENSAPEG00000007851	smg7	63	96.690	Amphiprion_percula
ENSSDUG00000017543	smg7	100	94.363	ENSATEG00000006931	smg7	100	94.276	Anabas_testudineus
ENSSDUG00000017543	smg7	99	64.751	ENSAPLG00000015811	SMG7	63	73.029	Anas_platyrhynchos
ENSSDUG00000017543	smg7	100	62.551	ENSACAG00000014989	SMG7	100	61.873	Anolis_carolinensis
ENSSDUG00000017543	smg7	99	65.593	ENSANAG00000028114	SMG7	90	89.697	Aotus_nancymaae
ENSSDUG00000017543	smg7	100	90.381	ENSACLG00000022079	smg7	96	95.724	Astatotilapia_calliptera
ENSSDUG00000017543	smg7	100	76.309	ENSAMXG00000020809	smg7	96	84.966	Astyanax_mexicanus
ENSSDUG00000017543	smg7	99	65.511	ENSBTAG00000008003	SMG7	93	71.627	Bos_taurus
ENSSDUG00000017543	smg7	99	65.690	ENSCJAG00000005135	SMG7	90	90.244	Callithrix_jacchus
ENSSDUG00000017543	smg7	99	61.526	ENSCAFG00000013276	SMG7	97	60.720	Canis_familiaris
ENSSDUG00000017543	smg7	99	65.039	ENSCAFG00020015475	SMG7	89	90.244	Canis_lupus_dingo
ENSSDUG00000017543	smg7	100	62.029	ENSCHIG00000018192	SMG7	95	71.905	Capra_hircus
ENSSDUG00000017543	smg7	99	65.765	ENSTSYG00000002667	SMG7	81	94.268	Carlito_syrichta
ENSSDUG00000017543	smg7	99	61.826	ENSCPOG00000008906	SMG7	99	60.487	Cavia_porcellus
ENSSDUG00000017543	smg7	99	65.763	ENSCCAG00000028596	SMG7	86	93.038	Cebus_capucinus
ENSSDUG00000017543	smg7	99	65.934	ENSCATG00000011063	SMG7	86	93.038	Cercocebus_atys
ENSSDUG00000017543	smg7	99	65.850	ENSCLAG00000010751	SMG7	95	71.905	Chinchilla_lanigera
ENSSDUG00000017543	smg7	99	62.189	ENSCSAG00000012654	SMG7	93	71.766	Chlorocebus_sabaeus
ENSSDUG00000017543	smg7	89	64.375	ENSCHOG00000010522	SMG7	93	57.332	Choloepus_hoffmanni
ENSSDUG00000017543	smg7	100	66.212	ENSCPBG00000015724	SMG7	96	73.533	Chrysemys_picta_bellii
ENSSDUG00000017543	smg7	99	65.818	ENSCANG00000015680	SMG7	86	93.038	Colobus_angolensis_palliatus
ENSSDUG00000017543	smg7	99	65.287	ENSCGRG00001013705	Smg7	95	71.071	Cricetulus_griseus_chok1gshd
ENSSDUG00000017543	smg7	99	65.140	ENSCGRG00000018401	Smg7	94	71.071	Cricetulus_griseus_crigri
ENSSDUG00000017543	smg7	99	83.767	ENSCVAG00000011842	smg7	65	86.806	Cyprinodon_variegatus
ENSSDUG00000017543	smg7	100	73.503	ENSDARG00000060767	smg7	96	85.379	Danio_rerio
ENSSDUG00000017543	smg7	99	61.948	ENSDORG00000007331	Smg7	95	71.349	Dipodomys_ordii
ENSSDUG00000017543	smg7	96	60.619	ENSETEG00000002654	SMG7	61	71.508	Echinops_telfairi
ENSSDUG00000017543	smg7	99	62.684	ENSEASG00005006524	SMG7	95	72.323	Equus_asinus_asinus
ENSSDUG00000017543	smg7	93	89.939	ENSECAG00000004313	SMG7	92	89.697	Equus_caballus
ENSSDUG00000017543	smg7	96	60.895	ENSEEUG00000002024	SMG7	87	71.853	Erinaceus_europaeus
ENSSDUG00000017543	smg7	100	75.429	ENSELUG00000010293	smg7	98	81.543	Esox_lucius
ENSSDUG00000017543	smg7	99	64.273	ENSFCAG00000010900	SMG7	99	63.415	Felis_catus
ENSSDUG00000017543	smg7	99	60.281	ENSFALG00000003047	SMG7	98	72.831	Ficedula_albicollis
ENSSDUG00000017543	smg7	99	62.100	ENSFDAG00000012121	SMG7	95	71.227	Fukomys_damarensis
ENSSDUG00000017543	smg7	100	84.841	ENSFHEG00000011073	smg7	64	87.912	Fundulus_heteroclitus
ENSSDUG00000017543	smg7	88	81.391	ENSGMOG00000004916	smg7	91	81.391	Gadus_morhua
ENSSDUG00000017543	smg7	99	64.920	ENSGALG00000004667	SMG7	63	73.562	Gallus_gallus
ENSSDUG00000017543	smg7	100	82.845	ENSGAFG00000019000	smg7	59	93.789	Gambusia_affinis
ENSSDUG00000017543	smg7	97	84.867	ENSGACG00000001634	smg7	97	85.007	Gasterosteus_aculeatus
ENSSDUG00000017543	smg7	99	66.019	ENSGGOG00000002342	SMG7	83	91.358	Gorilla_gorilla
ENSSDUG00000017543	smg7	98	89.460	ENSHBUG00000003726	smg7	96	95.862	Haplochromis_burtoni
ENSSDUG00000017543	smg7	99	66.019	ENSHGLG00000009353	SMG7	96	71.368	Heterocephalus_glaber_female
ENSSDUG00000017543	smg7	99	65.934	ENSHGLG00100009637	-	96	68.829	Heterocephalus_glaber_male
ENSSDUG00000017543	smg7	99	56.628	ENSHGLG00100004878	-	95	65.369	Heterocephalus_glaber_male
ENSSDUG00000017543	smg7	100	76.557	ENSIPUG00000016997	smg7	96	84.986	Ictalurus_punctatus
ENSSDUG00000017543	smg7	99	64.601	ENSSTOG00000000401	SMG7	95	71.646	Ictidomys_tridecemlineatus
ENSSDUG00000017543	smg7	99	62.131	ENSJJAG00000012351	Smg7	95	71.607	Jaculus_jaculus
ENSSDUG00000017543	smg7	97	82.801	ENSKMAG00000004900	smg7	100	82.447	Kryptolebias_marmoratus
ENSSDUG00000017543	smg7	99	90.026	ENSLBEG00000002983	smg7	99	90.199	Labrus_bergylta
ENSSDUG00000017543	smg7	53	80.301	ENSLBEG00000005220	-	76	79.669	Labrus_bergylta
ENSSDUG00000017543	smg7	99	67.483	ENSLACG00000000972	SMG7	95	72.500	Latimeria_chalumnae
ENSSDUG00000017543	smg7	99	68.267	ENSLOCG00000002010	smg7	96	76.126	Lepisosteus_oculatus
ENSSDUG00000017543	smg7	99	62.049	ENSLAFG00000008186	SMG7	95	71.389	Loxodonta_africana
ENSSDUG00000017543	smg7	99	64.767	ENSMFAG00000031653	SMG7	86	93.038	Macaca_fascicularis
ENSSDUG00000017543	smg7	99	65.229	ENSMMUG00000018458	SMG7	95	72.500	Macaca_mulatta
ENSSDUG00000017543	smg7	99	65.934	ENSMNEG00000034798	SMG7	86	93.038	Macaca_nemestrina
ENSSDUG00000017543	smg7	99	65.934	ENSMLEG00000037170	SMG7	96	72.504	Mandrillus_leucophaeus
ENSSDUG00000017543	smg7	88	90.828	ENSMAMG00000018733	smg7	85	91.617	Mastacembelus_armatus
ENSSDUG00000017543	smg7	100	90.728	ENSMZEG00005015247	smg7	96	95.724	Maylandia_zebra
ENSSDUG00000017543	smg7	99	64.621	ENSMGAG00000001561	SMG7	63	73.343	Meleagris_gallopavo
ENSSDUG00000017543	smg7	99	65.034	ENSMAUG00000019484	Smg7	95	70.932	Mesocricetus_auratus
ENSSDUG00000017543	smg7	100	65.437	ENSMICG00000007145	SMG7	81	94.194	Microcebus_murinus
ENSSDUG00000017543	smg7	99	64.751	ENSMOCG00000020748	Smg7	95	70.793	Microtus_ochrogaster
ENSSDUG00000017543	smg7	99	85.801	ENSMMOG00000001524	smg7	99	85.903	Mola_mola
ENSSDUG00000017543	smg7	92	66.667	ENSMODG00000007139	SMG7	68	73.379	Monodelphis_domestica
ENSSDUG00000017543	smg7	100	89.706	ENSMALG00000000061	smg7	90	95.172	Monopterus_albus
ENSSDUG00000017543	smg7	99	65.199	MGP_CAROLIEiJ_G0014704	Smg7	99	64.716	Mus_caroli
ENSSDUG00000017543	smg7	99	64.920	ENSMUSG00000042772	Smg7	95	71.071	Mus_musculus
ENSSDUG00000017543	smg7	99	65.262	MGP_PahariEiJ_G0027940	Smg7	95	71.349	Mus_pahari
ENSSDUG00000017543	smg7	99	65.004	MGP_SPRETEiJ_G0015511	Smg7	95	71.210	Mus_spretus
ENSSDUG00000017543	smg7	98	61.047	ENSMPUG00000011732	SMG7	97	60.830	Mustela_putorius_furo
ENSSDUG00000017543	smg7	100	61.437	ENSMLUG00000015417	SMG7	96	71.154	Myotis_lucifugus
ENSSDUG00000017543	smg7	100	65.152	ENSNGAG00000009836	Smg7	95	71.627	Nannospalax_galili
ENSSDUG00000017543	smg7	98	83.789	ENSNBRG00000024343	smg7	63	89.929	Neolamprologus_brichardi
ENSSDUG00000017543	smg7	99	66.019	ENSNLEG00000018018	SMG7	96	72.648	Nomascus_leucogenys
ENSSDUG00000017543	smg7	70	65.341	ENSMEUG00000004681	SMG7	69	74.775	Notamacropus_eugenii
ENSSDUG00000017543	smg7	96	57.818	ENSOPRG00000013942	SMG7	92	68.524	Ochotona_princeps
ENSSDUG00000017543	smg7	99	65.596	ENSODEG00000010390	SMG7	95	71.905	Octodon_degus
ENSSDUG00000017543	smg7	100	90.901	ENSONIG00000000277	smg7	63	96.138	Oreochromis_niloticus
ENSSDUG00000017543	smg7	99	61.038	ENSOANG00000000994	SMG7	96	70.927	Ornithorhynchus_anatinus
ENSSDUG00000017543	smg7	99	60.082	ENSOCUG00000005887	SMG7	88	70.654	Oryctolagus_cuniculus
ENSSDUG00000017543	smg7	100	80.329	ENSORLG00000007314	smg7	100	80.676	Oryzias_latipes
ENSSDUG00000017543	smg7	100	80.763	ENSORLG00020015779	smg7	100	81.109	Oryzias_latipes_hni
ENSSDUG00000017543	smg7	100	81.976	ENSORLG00015012289	smg7	100	81.023	Oryzias_latipes_hsok
ENSSDUG00000017543	smg7	100	78.969	ENSOMEG00000002328	smg7	69	88.000	Oryzias_melastigma
ENSSDUG00000017543	smg7	96	60.778	ENSOGAG00000003107	SMG7	88	71.330	Otolemur_garnettii
ENSSDUG00000017543	smg7	99	64.599	ENSOARG00000001352	SMG7	96	71.690	Ovis_aries
ENSSDUG00000017543	smg7	99	66.019	ENSPPAG00000031619	SMG7	89	90.798	Pan_paniscus
ENSSDUG00000017543	smg7	99	65.649	ENSPPRG00000011222	SMG7	100	64.610	Panthera_pardus
ENSSDUG00000017543	smg7	96	62.226	ENSPTIG00000007242	SMG7	100	61.752	Panthera_tigris_altaica
ENSSDUG00000017543	smg7	99	66.019	ENSPTRG00000001764	SMG7	86	93.038	Pan_troglodytes
ENSSDUG00000017543	smg7	99	65.934	ENSPANG00000004520	SMG7	93	71.766	Papio_anubis
ENSSDUG00000017543	smg7	99	69.004	ENSPKIG00000007242	smg7	97	79.391	Paramormyrops_kingsleyae
ENSSDUG00000017543	smg7	99	65.195	ENSPSIG00000012201	SMG7	100	65.161	Pelodiscus_sinensis
ENSSDUG00000017543	smg7	71	51.874	ENSPMGG00000021833	smg7	51	59.277	Periophthalmus_magnuspinnatus
ENSSDUG00000017543	smg7	99	64.144	ENSPEMG00000011315	Smg7	95	71.071	Peromyscus_maniculatus_bairdii
ENSSDUG00000017543	smg7	99	66.188	ENSPCIG00000003786	SMG7	89	93.750	Phascolarctos_cinereus
ENSSDUG00000017543	smg7	100	80.877	ENSPFOG00000019219	smg7	61	88.154	Poecilia_formosa
ENSSDUG00000017543	smg7	100	84.469	ENSPLAG00000001446	smg7	63	88.292	Poecilia_latipinna
ENSSDUG00000017543	smg7	97	84.135	ENSPMEG00000005218	smg7	65	88.430	Poecilia_mexicana
ENSSDUG00000017543	smg7	87	79.130	ENSPREG00000019039	smg7	68	86.226	Poecilia_reticulata
ENSSDUG00000017543	smg7	99	66.019	ENSPPYG00000000427	SMG7	64	72.988	Pongo_abelii
ENSSDUG00000017543	smg7	86	72.867	ENSPCAG00000008360	SMG7	82	74.336	Procavia_capensis
ENSSDUG00000017543	smg7	99	64.856	ENSPCOG00000011996	SMG7	76	94.231	Propithecus_coquereli
ENSSDUG00000017543	smg7	91	58.776	ENSPVAG00000000851	SMG7	89	58.776	Pteropus_vampyrus
ENSSDUG00000017543	smg7	100	90.468	ENSPNYG00000007643	smg7	96	96.000	Pundamilia_nyererei
ENSSDUG00000017543	smg7	100	77.425	ENSPNAG00000011374	smg7	95	84.232	Pygocentrus_nattereri
ENSSDUG00000017543	smg7	99	65.625	ENSRNOG00000027962	Smg7	96	71.925	Rattus_norvegicus
ENSSDUG00000017543	smg7	99	65.934	ENSRBIG00000036316	SMG7	96	72.504	Rhinopithecus_bieti
ENSSDUG00000017543	smg7	99	65.934	ENSRROG00000035719	SMG7	96	72.504	Rhinopithecus_roxellana
ENSSDUG00000017543	smg7	99	64.426	ENSSBOG00000023454	SMG7	86	94.340	Saimiri_boliviensis_boliviensis
ENSSDUG00000017543	smg7	99	66.007	ENSSHAG00000013147	SMG7	63	73.444	Sarcophilus_harrisii
ENSSDUG00000017543	smg7	100	74.315	ENSSFOG00015017252	smg7	96	81.466	Scleropages_formosus
ENSSDUG00000017543	smg7	100	87.619	ENSSMAG00000006067	smg7	65	92.700	Scophthalmus_maximus
ENSSDUG00000017543	smg7	99	65.166	ENSSPUG00000002064	SMG7	63	73.151	Sphenodon_punctatus
ENSSDUG00000017543	smg7	98	91.935	ENSSPAG00000008733	smg7	63	95.904	Stegastes_partitus
ENSSDUG00000017543	smg7	99	64.651	ENSSSCG00000015558	SMG7	95	72.199	Sus_scrofa
ENSSDUG00000017543	smg7	99	65.251	ENSTGUG00000003928	SMG7	63	73.343	Taeniopygia_guttata
ENSSDUG00000017543	smg7	100	72.735	ENSTNIG00000002802	smg7	96	80.299	Tetraodon_nigroviridis
ENSSDUG00000017543	smg7	78	68.000	ENSTBEG00000003220	SMG7	66	68.000	Tupaia_belangeri
ENSSDUG00000017543	smg7	96	61.172	ENSTTRG00000014778	SMG7	87	71.766	Tursiops_truncatus
ENSSDUG00000017543	smg7	96	63.158	ENSUAMG00000017473	SMG7	100	62.742	Ursus_americanus
ENSSDUG00000017543	smg7	96	63.158	ENSUMAG00000016389	SMG7	100	62.742	Ursus_maritimus
ENSSDUG00000017543	smg7	99	63.969	ENSVVUG00000008976	SMG7	99	63.574	Vulpes_vulpes
ENSSDUG00000017543	smg7	100	59.250	ENSXETG00000012528	smg7	100	59.025	Xenopus_tropicalis
ENSSDUG00000017543	smg7	100	84.124	ENSXMAG00000007123	smg7	64	88.154	Xiphophorus_maculatus