EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000018247 (Gene tree)
Gene ID: 111230330
Gene Symbol: -
Alias: -
Full Name: poly(A) polymerase beta
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 11880 bases
Position: chrBDQW01000262.1:283260-295139
Accession: 111230330
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000025143	PAP_RNA-bind	PF04926.15	4.2e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000025636	-	825	-	ENSSDUP00000025174	274 (aa)	-	-
ENSSDUT00000025604	-	5959	XM_022757027	ENSSDUP00000025143	674 (aa)	XP_022612748	UPI000BBE562B

Gene Model

Click here to download ENSSDUG00000018247's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000018247's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000018247	-	72	55.187	ENSSDUG00000000912	papolg	71	55.187

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000018247	-	72	57.851	ENSG00000090060	PAPOLA	94	66.492	Homo_sapiens
ENSSDUG00000018247	-	72	57.851	ENSAMEG00000014142	PAPOLA	65	58.091	Ailuropoda_melanoleuca
ENSSDUG00000018247	-	74	57.229	ENSAPLG00000006645	PAPOLA	99	44.549	Anas_platyrhynchos
ENSSDUG00000018247	-	71	58.091	ENSACAG00000013474	PAPOLA	76	56.687	Anolis_carolinensis
ENSSDUG00000018247	-	97	47.654	ENSANAG00000018274	PAPOLA	98	48.387	Aotus_nancymaae
ENSSDUG00000018247	-	72	54.451	ENSANAG00000027941	-	88	54.451	Aotus_nancymaae
ENSSDUG00000018247	-	74	57.315	ENSAMXG00000018141	papola	100	46.799	Astyanax_mexicanus
ENSSDUG00000018247	-	97	47.076	ENSBTAG00000004054	PAPOLA	98	47.661	Bos_taurus
ENSSDUG00000018247	-	72	58.058	ENSCJAG00000006512	PAPOLA	88	58.299	Callithrix_jacchus
ENSSDUG00000018247	-	72	57.851	ENSCAFG00000017783	PAPOLA	65	57.851	Canis_familiaris
ENSSDUG00000018247	-	97	47.230	ENSCAFG00020011550	PAPOLA	86	58.091	Canis_lupus_dingo
ENSSDUG00000018247	-	72	57.438	ENSCHIG00000025004	-	76	57.676	Capra_hircus
ENSSDUG00000018247	-	97	48.018	ENSTSYG00000012384	PAPOLA	97	48.018	Carlito_syrichta
ENSSDUG00000018247	-	97	44.949	ENSCPOG00000002648	PAPOLA	97	44.868	Cavia_porcellus
ENSSDUG00000018247	-	97	47.640	ENSCCAG00000025120	PAPOLA	87	58.299	Cebus_capucinus
ENSSDUG00000018247	-	97	47.110	ENSCATG00000018815	PAPOLA	89	58.299	Cercocebus_atys
ENSSDUG00000018247	-	97	47.584	ENSCLAG00000016342	PAPOLA	98	47.507	Chinchilla_lanigera
ENSSDUG00000018247	-	72	58.058	ENSCSAG00000010516	PAPOLA	65	58.058	Chlorocebus_sabaeus
ENSSDUG00000018247	-	72	58.264	ENSCPBG00000024125	PAPOLA	65	58.264	Chrysemys_picta_bellii
ENSSDUG00000018247	-	72	53.306	ENSCANG00000000159	PAPOLA	65	53.306	Colobus_angolensis_palliatus
ENSSDUG00000018247	-	74	53.493	ENSCGRG00001000229	-	79	53.493	Cricetulus_griseus_chok1gshd
ENSSDUG00000018247	-	69	50.533	ENSCGRG00001002732	-	72	50.533	Cricetulus_griseus_chok1gshd
ENSSDUG00000018247	-	97	46.695	ENSCGRG00001022693	-	98	47.731	Cricetulus_griseus_chok1gshd
ENSSDUG00000018247	-	97	46.695	ENSCGRG00000003664	-	98	47.731	Cricetulus_griseus_crigri
ENSSDUG00000018247	-	72	51.033	ENSCGRG00000000257	-	67	51.033	Cricetulus_griseus_crigri
ENSSDUG00000018247	-	72	49.692	ENSCGRG00000001888	-	64	49.692	Cricetulus_griseus_crigri
ENSSDUG00000018247	-	93	57.413	ENSCSEG00000001841	-	81	61.023	Cynoglossus_semilaevis
ENSSDUG00000018247	-	74	57.916	ENSDARG00000009585	papola	69	57.916	Danio_rerio
ENSSDUG00000018247	-	74	48.394	ENSETEG00000004889	PAPOLA	67	48.394	Echinops_telfairi
ENSSDUG00000018247	-	74	57.200	ENSELUG00000018972	papola	88	48.628	Esox_lucius
ENSSDUG00000018247	-	97	47.110	ENSFCAG00000006784	PAPOLA	98	47.877	Felis_catus
ENSSDUG00000018247	-	74	57.344	ENSFALG00000002547	PAPOLA	64	57.344	Ficedula_albicollis
ENSSDUG00000018247	-	97	46.589	ENSFDAG00000010370	PAPOLA	98	47.291	Fukomys_damarensis
ENSSDUG00000018247	-	70	42.418	ENSGMOG00000010209	papola	100	43.487	Gadus_morhua
ENSSDUG00000018247	-	74	57.200	ENSGALG00000033099	PAPOLA	68	57.200	Gallus_gallus
ENSSDUG00000018247	-	71	60.915	ENSGACG00000006142	-	100	60.707	Gasterosteus_aculeatus
ENSSDUG00000018247	-	71	58.506	ENSGAGG00000020500	PAPOLA	72	58.506	Gopherus_agassizii
ENSSDUG00000018247	-	97	46.481	ENSGGOG00000006287	PAPOLA	98	47.214	Gorilla_gorilla
ENSSDUG00000018247	-	97	46.352	ENSHGLG00000007909	-	98	47.515	Heterocephalus_glaber_female
ENSSDUG00000018247	-	71	50.936	ENSHGLG00000017457	-	74	52.061	Heterocephalus_glaber_female
ENSSDUG00000018247	-	97	38.201	ENSHGLG00000007467	-	97	37.482	Heterocephalus_glaber_female
ENSSDUG00000018247	-	97	46.132	ENSHGLG00100017273	PAPOLA	98	47.291	Heterocephalus_glaber_male
ENSSDUG00000018247	-	88	51.753	ENSIPUG00000005919	papola	76	51.661	Ictalurus_punctatus
ENSSDUG00000018247	-	97	47.399	ENSSTOG00000011471	PAPOLA	98	47.877	Ictidomys_tridecemlineatus
ENSSDUG00000018247	-	97	47.941	ENSJJAG00000024340	Papola	98	48.235	Jaculus_jaculus
ENSSDUG00000018247	-	97	42.896	ENSLACG00000018136	PAPOLA	98	42.896	Latimeria_chalumnae
ENSSDUG00000018247	-	97	42.577	ENSLOCG00000008632	papola	97	42.008	Lepisosteus_oculatus
ENSSDUG00000018247	-	71	57.884	ENSLAFG00000000946	PAPOLA	65	57.884	Loxodonta_africana
ENSSDUG00000018247	-	97	46.120	ENSMFAG00000001792	PAPOLA	88	58.299	Macaca_fascicularis
ENSSDUG00000018247	-	97	47.110	ENSMMUG00000018610	PAPOLA	69	58.058	Macaca_mulatta
ENSSDUG00000018247	-	97	47.110	ENSMNEG00000043747	PAPOLA	88	58.299	Macaca_nemestrina
ENSSDUG00000018247	-	97	46.120	ENSMLEG00000032066	PAPOLA	98	46.852	Mandrillus_leucophaeus
ENSSDUG00000018247	-	57	58.639	ENSMGAG00000013228	-	61	58.639	Meleagris_gallopavo
ENSSDUG00000018247	-	97	47.170	ENSMAUG00000017178	Papola	98	47.877	Mesocricetus_auratus
ENSSDUG00000018247	-	97	47.399	ENSMICG00000010347	PAPOLA	87	58.299	Microcebus_murinus
ENSSDUG00000018247	-	97	46.957	ENSMOCG00000021670	Papola	98	47.584	Microtus_ochrogaster
ENSSDUG00000018247	-	72	58.058	ENSMODG00000012887	-	65	58.299	Monodelphis_domestica
ENSSDUG00000018247	-	70	52.000	ENSMODG00000001969	-	65	52.621	Monodelphis_domestica
ENSSDUG00000018247	-	97	46.408	MGP_CAROLIEiJ_G0018093	Papola	98	46.657	Mus_caroli
ENSSDUG00000018247	-	97	46.552	ENSMUSG00000021111	Papola	98	47.214	Mus_musculus
ENSSDUG00000018247	-	97	46.552	MGP_PahariEiJ_G0029850	Papola	98	47.214	Mus_pahari
ENSSDUG00000018247	-	97	46.552	MGP_SPRETEiJ_G0018943	Papola	98	47.214	Mus_spretus
ENSSDUG00000018247	-	72	57.645	ENSMPUG00000003054	PAPOLA	65	57.645	Mustela_putorius_furo
ENSSDUG00000018247	-	72	57.851	ENSMLUG00000010922	PAPOLA	65	58.091	Myotis_lucifugus
ENSSDUG00000018247	-	97	47.230	ENSNGAG00000022172	Papola	98	46.501	Nannospalax_galili
ENSSDUG00000018247	-	97	46.765	ENSNLEG00000000625	PAPOLA	97	47.500	Nomascus_leucogenys
ENSSDUG00000018247	-	52	35.511	ENSMEUG00000007831	-	53	35.511	Notamacropus_eugenii
ENSSDUG00000018247	-	71	55.187	ENSOPRG00000007625	PAPOLA	66	55.187	Ochotona_princeps
ENSSDUG00000018247	-	73	63.878	ENSONIG00000001062	-	99	63.878	Oreochromis_niloticus
ENSSDUG00000018247	-	97	47.170	ENSOANG00000013812	PAPOLA	97	47.315	Ornithorhynchus_anatinus
ENSSDUG00000018247	-	72	57.851	ENSOCUG00000011531	PAPOLA	65	57.851	Oryctolagus_cuniculus
ENSSDUG00000018247	-	72	58.058	ENSOGAG00000004611	PAPOLA	65	58.299	Otolemur_garnettii
ENSSDUG00000018247	-	72	57.438	ENSOARG00000016579	-	65	57.438	Ovis_aries
ENSSDUG00000018247	-	72	57.851	ENSPPAG00000030505	PAPOLA	98	46.834	Pan_paniscus
ENSSDUG00000018247	-	72	57.851	ENSPPRG00000008616	PAPOLA	67	57.851	Panthera_pardus
ENSSDUG00000018247	-	72	57.851	ENSPTIG00000018852	PAPOLA	67	57.851	Panthera_tigris_altaica
ENSSDUG00000018247	-	97	46.481	ENSPTRG00000006704	PAPOLA	98	47.214	Pan_troglodytes
ENSSDUG00000018247	-	97	47.110	ENSPANG00000025582	PAPOLA	88	58.299	Papio_anubis
ENSSDUG00000018247	-	72	58.969	ENSPKIG00000014471	papola	98	47.295	Paramormyrops_kingsleyae
ENSSDUG00000018247	-	71	58.299	ENSPSIG00000014157	PAPOLA	56	58.299	Pelodiscus_sinensis
ENSSDUG00000018247	-	97	46.880	ENSPEMG00000000043	Papola	98	47.584	Peromyscus_maniculatus_bairdii
ENSSDUG00000018247	-	72	58.058	ENSPCIG00000013234	PAPOLA	70	58.299	Phascolarctos_cinereus
ENSSDUG00000018247	-	72	56.818	ENSPPYG00000006128	PAPOLA	64	57.054	Pongo_abelii
ENSSDUG00000018247	-	62	58.373	ENSPCAG00000004199	PAPOLA	63	58.373	Procavia_capensis
ENSSDUG00000018247	-	71	56.432	ENSPCOG00000022117	PAPOLA	96	46.402	Propithecus_coquereli
ENSSDUG00000018247	-	72	57.438	ENSPVAG00000013925	PAPOLA	65	57.676	Pteropus_vampyrus
ENSSDUG00000018247	-	99	47.301	ENSPNAG00000010467	papola	100	46.610	Pygocentrus_nattereri
ENSSDUG00000018247	-	72	57.645	ENSRNOG00000004827	Papola	65	57.645	Rattus_norvegicus
ENSSDUG00000018247	-	97	47.384	ENSRBIG00000038490	PAPOLA	89	58.299	Rhinopithecus_bieti
ENSSDUG00000018247	-	72	58.058	ENSRROG00000025545	PAPOLA	67	58.058	Rhinopithecus_roxellana
ENSSDUG00000018247	-	97	47.110	ENSSBOG00000024061	PAPOLA	88	58.299	Saimiri_boliviensis_boliviensis
ENSSDUG00000018247	-	71	58.506	ENSSHAG00000015211	PAPOLA	65	58.506	Sarcophilus_harrisii
ENSSDUG00000018247	-	74	57.545	ENSSFOG00015004431	papola	90	57.545	Scleropages_formosus
ENSSDUG00000018247	-	74	57.545	ENSSPUG00000005835	PAPOLA	66	57.545	Sphenodon_punctatus
ENSSDUG00000018247	-	97	47.254	ENSSSCG00000002505	-	98	48.023	Sus_scrofa
ENSSDUG00000018247	-	74	57.344	ENSTGUG00000012687	PAPOLA	67	57.344	Taeniopygia_guttata
ENSSDUG00000018247	-	54	54.945	ENSTBEG00000000194	PAPOLA	50	54.945	Tupaia_belangeri
ENSSDUG00000018247	-	71	50.830	ENSTTRG00000005717	PAPOLA	65	50.830	Tursiops_truncatus
ENSSDUG00000018247	-	61	60.827	ENSUAMG00000025737	PAPOLA	96	60.827	Ursus_americanus
ENSSDUG00000018247	-	71	58.299	ENSVPAG00000006464	PAPOLA	65	58.299	Vicugna_pacos
ENSSDUG00000018247	-	97	47.731	ENSVVUG00000028340	PAPOLA	98	47.731	Vulpes_vulpes
ENSSDUG00000018247	-	72	57.231	ENSXETG00000013949	papola	66	57.231	Xenopus_tropicalis