EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000018313 (Gene tree)
Gene ID: 111234229
Gene Symbol: setd1ba
Alias: im:7156157|si:dkey-237o15.4
Full Name: SET domain containing 1B
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 15014 bases
Position: chrBDQW01000442.1:1283608-1298621
Accession: 111234229
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000025216	RRM_1	PF00076.22	7.2e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000025679	-	7783	XM_022762196	ENSSDUP00000025216	1787 (aa)	XP_022617917	-

Gene Model

Click here to download ENSSDUG00000018313's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu00310	Lysine degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000018313's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000018313	setd1ba	56	68.525	ENSSDUG00000022142	setd1a	62	61.351

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000018313	setd1ba	100	89.373	ENSAPOG00000014731	setd1ba	94	94.089	Acanthochromis_polyacanthus
ENSSDUG00000018313	setd1ba	97	89.195	ENSAOCG00000012148	setd1ba	94	93.793	Amphiprion_ocellaris
ENSSDUG00000018313	setd1ba	90	89.757	ENSATEG00000021563	setd1ba	99	90.061	Anabas_testudineus
ENSSDUG00000018313	setd1ba	99	50.746	ENSAPLG00000005217	SETD1B	83	60.601	Anas_platyrhynchos
ENSSDUG00000018313	setd1ba	50	73.994	ENSCHIG00000013406	SETD1B	87	55.128	Capra_hircus
ENSSDUG00000018313	setd1ba	99	63.041	ENSDARG00000060847	setd1ba	91	67.090	Danio_rerio
ENSSDUG00000018313	setd1ba	53	83.282	ENSFALG00000009136	SETD1B	83	59.968	Ficedula_albicollis
ENSSDUG00000018313	setd1ba	53	90.476	ENSGMOG00000009831	setd1ba	58	90.476	Gadus_morhua
ENSSDUG00000018313	setd1ba	56	76.064	ENSGALG00000004324	SETD1B	83	61.173	Gallus_gallus
ENSSDUG00000018313	setd1ba	88	82.579	ENSGAFG00000008712	setd1ba	87	83.366	Gambusia_affinis
ENSSDUG00000018313	setd1ba	55	80.466	ENSKMAG00000007804	setd1ba	94	79.882	Kryptolebias_marmoratus
ENSSDUG00000018313	setd1ba	71	56.955	ENSLACG00000018379	SETD1B	83	61.613	Latimeria_chalumnae
ENSSDUG00000018313	setd1ba	64	59.443	ENSMGAG00000004421	SETD1B	83	60.380	Meleagris_gallopavo
ENSSDUG00000018313	setd1ba	100	82.927	ENSMMOG00000008190	setd1ba	55	89.173	Mola_mola
ENSSDUG00000018313	setd1ba	100	86.079	ENSMALG00000005362	setd1ba	55	93.300	Monopterus_albus
ENSSDUG00000018313	setd1ba	100	82.129	ENSNBRG00000002915	setd1ba	55	89.163	Neolamprologus_brichardi
ENSSDUG00000018313	setd1ba	50	82.911	ENSNLEG00000001254	SETD1B	69	81.424	Nomascus_leucogenys
ENSSDUG00000018313	setd1ba	52	79.394	ENSODEG00000010155	SETD1B	80	57.643	Octodon_degus
ENSSDUG00000018313	setd1ba	66	67.937	ENSONIG00000010832	-	51	67.601	Oreochromis_niloticus
ENSSDUG00000018313	setd1ba	100	76.300	ENSORLG00000008435	setd1ba	55	81.145	Oryzias_latipes
ENSSDUG00000018313	setd1ba	100	76.641	ENSORLG00020017079	setd1ba	55	80.948	Oryzias_latipes_hni
ENSSDUG00000018313	setd1ba	67	78.465	ENSORLG00015004156	setd1ba	81	82.725	Oryzias_latipes_hsok
ENSSDUG00000018313	setd1ba	85	63.285	ENSPKIG00000023115	setd1ba	84	65.681	Paramormyrops_kingsleyae
ENSSDUG00000018313	setd1ba	89	82.534	ENSPMGG00000011527	setd1ba	55	80.103	Periophthalmus_magnuspinnatus
ENSSDUG00000018313	setd1ba	100	76.994	ENSPFOG00000019768	setd1ba	94	81.018	Poecilia_formosa
ENSSDUG00000018313	setd1ba	100	77.144	ENSPREG00000011589	setd1ba	94	83.202	Poecilia_reticulata
ENSSDUG00000018313	setd1ba	100	82.745	ENSPNYG00000009484	setd1ba	55	89.261	Pundamilia_nyererei
ENSSDUG00000018313	setd1ba	94	60.584	ENSPNAG00000016011	setd1ba	94	67.402	Pygocentrus_nattereri
ENSSDUG00000018313	setd1ba	80	71.066	ENSSFOG00015004814	SETD1B	83	74.656	Scleropages_formosus
ENSSDUG00000018313	setd1ba	97	96.451	ENSSLDG00000015543	setd1ba	99	96.451	Seriola_lalandi_dorsalis
ENSSDUG00000018313	setd1ba	72	67.703	ENSSSCG00000009806	SETD1B	90	60.307	Sus_scrofa
ENSSDUG00000018313	setd1ba	55	75.862	ENSTGUG00000006093	-	83	60.506	Taeniopygia_guttata
ENSSDUG00000018313	setd1ba	61	50.762	ENSXETG00000003760	setd1b	84	58.228	Xenopus_tropicalis