EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000018314 (Gene tree)
Gene ID: 111221185
Gene Symbol: chd1
Alias: fc26h11|fk85d05|si:dkey-106m21.4|wu:fc26h11|wu:fk85d05|zgc:173506
Full Name: chromodomain helicase DNA binding protein 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 25426 bases
Position: chrBDQW01000081.1:1066774-1092199
Accession: 111221185
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000025381	ResIII	PF04851.15	5.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000025845	-	4284	-	ENSSDUP00000025381	1427 (aa)	-	-
ENSSDUT00000025771	-	7690	XM_022744546	ENSSDUP00000025307	1800 (aa)	XP_022600267	UPI000BBEE49A

Gene Model

Click here to download ENSSDUG00000018314's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000018314's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000018314	chd1	94	77.966	ENSG00000153922	CHD1	79	78.335	Homo_sapiens
ENSSDUG00000018314	chd1	81	94.057	ENSAPOG00000005764	chd1	98	94.057	Acanthochromis_polyacanthus
ENSSDUG00000018314	chd1	86	94.276	ENSAOCG00000023105	chd1	77	94.276	Amphiprion_ocellaris
ENSSDUG00000018314	chd1	86	95.752	ENSAPEG00000013544	chd1	77	95.752	Amphiprion_percula
ENSSDUG00000018314	chd1	87	94.489	ENSATEG00000010676	chd1	80	91.131	Anabas_testudineus
ENSSDUG00000018314	chd1	84	88.650	ENSAMXG00000010843	chd1	92	88.650	Astyanax_mexicanus
ENSSDUG00000018314	chd1	94	78.514	ENSCATG00000032035	CHD1	80	78.661	Cercocebus_atys
ENSSDUG00000018314	chd1	94	78.514	ENSCSAG00000015339	CHD1	79	78.661	Chlorocebus_sabaeus
ENSSDUG00000018314	chd1	94	75.753	ENSCANG00000036916	CHD1	79	75.994	Colobus_angolensis_palliatus
ENSSDUG00000018314	chd1	87	81.636	ENSCGRG00001023943	Chd1	79	78.146	Cricetulus_griseus_chok1gshd
ENSSDUG00000018314	chd1	87	81.636	ENSCGRG00000008652	Chd1	79	78.146	Cricetulus_griseus_crigri
ENSSDUG00000018314	chd1	86	92.314	ENSCSEG00000009553	chd1	77	92.314	Cynoglossus_semilaevis
ENSSDUG00000018314	chd1	95	78.178	ENSEASG00005016110	CHD1	97	78.545	Equus_asinus_asinus
ENSSDUG00000018314	chd1	86	87.886	ENSELUG00000017677	chd1	75	87.967	Esox_lucius
ENSSDUG00000018314	chd1	91	86.544	ENSFHEG00000021164	chd1	89	91.265	Fundulus_heteroclitus
ENSSDUG00000018314	chd1	94	84.988	ENSGMOG00000001537	chd1	77	83.434	Gadus_morhua
ENSSDUG00000018314	chd1	88	79.701	ENSGALG00000031327	-	76	80.431	Gallus_gallus
ENSSDUG00000018314	chd1	89	93.395	ENSGAFG00000019880	chd1	85	93.395	Gambusia_affinis
ENSSDUG00000018314	chd1	94	74.191	ENSGGOG00000011463	CHD1	79	74.412	Gorilla_gorilla
ENSSDUG00000018314	chd1	86	93.393	ENSHCOG00000014222	chd1	76	93.469	Hippocampus_comes
ENSSDUG00000018314	chd1	84	90.544	ENSIPUG00000001369	chd1	77	89.551	Ictalurus_punctatus
ENSSDUG00000018314	chd1	71	77.081	ENSLAFG00000023183	CHD1	94	76.991	Loxodonta_africana
ENSSDUG00000018314	chd1	94	78.514	ENSMFAG00000031226	CHD1	79	78.661	Macaca_fascicularis
ENSSDUG00000018314	chd1	95	78.242	ENSMMUG00000014090	CHD1	95	78.388	Macaca_mulatta
ENSSDUG00000018314	chd1	94	78.824	ENSMNEG00000045073	CHD1	79	78.750	Macaca_nemestrina
ENSSDUG00000018314	chd1	87	75.621	ENSMLEG00000041096	CHD1	79	73.618	Mandrillus_leucophaeus
ENSSDUG00000018314	chd1	87	93.296	ENSMZEG00005010957	chd1	93	93.296	Maylandia_zebra
ENSSDUG00000018314	chd1	91	77.609	ENSMOCG00000019121	Chd1	78	78.218	Microtus_ochrogaster
ENSSDUG00000018314	chd1	52	81.398	ENSMODG00000019266	-	96	83.243	Monodelphis_domestica
ENSSDUG00000018314	chd1	95	93.608	ENSMALG00000013317	chd1	95	93.461	Monopterus_albus
ENSSDUG00000018314	chd1	94	77.778	MGP_CAROLIEiJ_G0021099	Chd1	93	78.705	Mus_caroli
ENSSDUG00000018314	chd1	94	78.146	ENSMUSG00000023852	Chd1	93	78.705	Mus_musculus
ENSSDUG00000018314	chd1	94	77.999	MGP_PahariEiJ_G0023414	Chd1	94	78.627	Mus_pahari
ENSSDUG00000018314	chd1	83	94.266	ENSNBRG00000006860	chd1	75	94.266	Neolamprologus_brichardi
ENSSDUG00000018314	chd1	94	78.113	ENSNLEG00000014493	CHD1	79	78.335	Nomascus_leucogenys
ENSSDUG00000018314	chd1	95	77.981	ENSOANG00000004891	CHD1	75	84.759	Ornithorhynchus_anatinus
ENSSDUG00000018314	chd1	71	87.017	ENSORLG00015016725	chd1	95	87.451	Oryzias_latipes_hsok
ENSSDUG00000018314	chd1	94	76.979	ENSPPAG00000043367	CHD1	80	77.199	Pan_paniscus
ENSSDUG00000018314	chd1	94	78.040	ENSPTRG00000017103	CHD1	79	78.335	Pan_troglodytes
ENSSDUG00000018314	chd1	94	78.514	ENSPANG00000006387	CHD1	79	78.661	Papio_anubis
ENSSDUG00000018314	chd1	94	75.944	ENSPKIG00000024719	chd1	76	80.700	Paramormyrops_kingsleyae
ENSSDUG00000018314	chd1	87	91.339	ENSPMGG00000005785	chd1	93	91.280	Periophthalmus_magnuspinnatus
ENSSDUG00000018314	chd1	94	78.354	ENSPEMG00000015939	Chd1	79	78.709	Peromyscus_maniculatus_bairdii
ENSSDUG00000018314	chd1	59	84.515	ENSPLAG00000006473	-	85	86.342	Poecilia_latipinna
ENSSDUG00000018314	chd1	95	86.681	ENSPREG00000004209	chd1	81	87.823	Poecilia_reticulata
ENSSDUG00000018314	chd1	95	78.063	ENSRNOG00000014434	Chd1	95	78.146	Rattus_norvegicus
ENSSDUG00000018314	chd1	92	78.389	ENSRBIG00000044325	CHD1	79	78.507	Rhinopithecus_bieti
ENSSDUG00000018314	chd1	94	78.781	ENSRROG00000001726	CHD1	80	78.897	Rhinopithecus_roxellana
ENSSDUG00000018314	chd1	89	83.673	ENSSFOG00015007161	chd1	90	86.260	Scleropages_formosus
ENSSDUG00000018314	chd1	71	99.886	ENSSLDG00000017244	chd1	88	99.886	Seriola_lalandi_dorsalis
ENSSDUG00000018314	chd1	95	94.838	ENSSPAG00000007024	chd1	95	95.203	Stegastes_partitus
ENSSDUG00000018314	chd1	94	78.309	ENSSSCG00000014177	CHD1	91	78.514	Sus_scrofa
ENSSDUG00000018314	chd1	94	88.104	ENSTRUG00000010282	chd1	79	88.550	Takifugu_rubripes
ENSSDUG00000018314	chd1	86	89.271	ENSTNIG00000007101	chd1	95	89.289	Tetraodon_nigroviridis
ENSSDUG00000018314	chd1	95	83.173	ENSXCOG00000017184	chd1	75	86.143	Xiphophorus_couchianus
ENSSDUG00000018314	chd1	93	86.907	ENSXMAG00000014538	chd1	96	88.075	Xiphophorus_maculatus